ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl26a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein P... 30 3.3
2MIAA_THET2 (Q72L59) tRNA delta(2)-isopentenylpyrophosphate trans... 30 3.3
3KINB2_ARATH (Q9SCY5) SNF1-related protein kinase regulatory subu... 29 4.3
4NOP12_NEUCR (Q7S2L7) Nucleolar protein 12 28 7.4
5MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia p... 28 9.7
6GLYA_SALRD (Q2S4G9) Serine hydroxymethyltransferase (EC 2.1.2.1)... 28 9.7

>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c|
           precursor
          Length = 943

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 19/79 (24%), Positives = 31/79 (39%)
 Frame = -2

Query: 417 SASVPPNTAQKSRSAANTAGAVSSAILCXXXXXXXXXLTGD*KXXXXXXXXXXXXXXRSD 238
           S+S+  ++   + SA  T+ ++SS +            T                   S 
Sbjct: 224 SSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTA---ATSASATSSSAQYNTSS 280

Query: 237 LSPTATPQRPSLSTACSTT 181
           L P++TP    LS+A STT
Sbjct: 281 LLPSSTPSSTPLSSANSTT 299



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>MIAA_THET2 (Q72L59) tRNA delta(2)-isopentenylpyrophosphate transferase (EC|
           2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA
           isopentenyltransferase) (IPTase) (IPPT)
          Length = 302

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 25/72 (34%), Positives = 34/72 (47%)
 Frame = -1

Query: 319 GEEPPDRRLEATATGMRLRTTAMSQVGSEPDSDAPTPEPIHRLLHHLSDLPFLQDSPT*H 140
           GEE P   + A AT        M   G +  +D PTPE   R+ HHL D+  L+      
Sbjct: 23  GEEVPVEVVSADAT--------MVYRGLDIGTDKPTPEERARVPHHLVDV--LEPHEAMS 72

Query: 139 PATTCSLAKQAI 104
            A   +LA++AI
Sbjct: 73  VARFLALAEEAI 84



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>KINB2_ARATH (Q9SCY5) SNF1-related protein kinase regulatory subunit beta-2|
           (AKIN beta2) (AKINB2)
          Length = 289

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 331 AQERGEEPPDRRLEATATGMRLRTTAMSQVGSEPDSDAPTPEPIHRLLHHL 179
           A++  +EPP            L+ T ++   + PD  +P P P H +L+HL
Sbjct: 211 AEDYSKEPP-------VVPPHLQMTLLNLPAANPDIPSPLPRPQHVILNHL 254



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>NOP12_NEUCR (Q7S2L7) Nucleolar protein 12|
          Length = 594

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 325 ERGEEPPDRRLEATATGMRLRTTAMSQVGSEPDSDAPTPEPIHRLL 188
           E  EEP  +RL+A       + TA ++   + DS++    P+H  L
Sbjct: 141 EDDEEPAGKRLKADEQSGEKKDTAKAEKKDDDDSESADEVPVHESL 186



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>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43) (Homologous to ALR protein)
          Length = 4911

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 220  APTPEPIHRLLHHLSDLPFLQDSPT*HPATTCSLA 116
            A TP PI    H+ S+ P+ Q   T HPA   S A
Sbjct: 2076 ALTPRPIDNFSHNQSNDPYSQPPLTPHPAVNESFA 2110



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>GLYA_SALRD (Q2S4G9) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 432

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -1

Query: 310 PPDRRLEATATGMRLRTTAMSQVGSEPDSDAPTPEPIHRLLHHLSD 173
           P D +     +G+RL T AM+  G  PD  A   E I R+L    D
Sbjct: 361 PFDDKSPFVTSGLRLGTPAMTTRGFGPDEFAHVAEMIDRVLQDPED 406


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,753,838
Number of Sequences: 219361
Number of extensions: 692978
Number of successful extensions: 2532
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2530
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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