ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl26a09 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (4SNc-Tudor domain protein) Length = 897 Score = 79.7 bits (195), Expect = 4e-15 Identities = 51/128 (39%), Positives = 70/128 (54%), Gaps = 13/128 (10%) Frame = +3 Query: 138 IMASNTGASGWLRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRG----- 302 + +S A RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 9 VQSSQASAPQLQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGALARRAIQGQP 68 Query: 303 ----GVDEPFAWESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYLG----XQNVAYLV 458 DEP+A+++REF+RK +GKEV F V+ P GRE+G VYLG +N+A + Sbjct: 69 DTKDTPDEPWAFQAREFMRKKVIGKEVCFTVENKTPQ-GREYGMVYLGKDTSGENIAESL 127 Query: 459 VAAXWARV 482 VA A V Sbjct: 128 VAEGLAMV 135 Score = 42.0 bits (97), Expect = 9e-04 Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 22/123 (17%) Frame = +3 Query: 180 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR-----------RGGVDEPFAW 326 KV V + D +++ K K+I LS + PRL R D P+ + Sbjct: 347 KVMQVVNADAIVV----KLNSGEYKTIHLSSIRPPRLEGEEKNKDKDKRFRPLYDIPYMF 402 Query: 327 ESREFLRKLCVGKEVTFRVDY-----TAPNIG------REFGTVYLGXQNVAYLVVAAXW 473 E+REFLRK +GK+V VDY A +G R TV +G N+A +V+ Sbjct: 403 EAREFLRKKLIGKKVNVTVDYIRAATNAMEMGVPAFPERTCATVTIGGINIAEALVSKGL 462 Query: 474 ARV 482 A V Sbjct: 463 ATV 465
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 79.0 bits (193), Expect = 6e-15 Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 13/110 (11%) Frame = +3 Query: 174 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGV---------DEPFAW 326 RG VK V SG +++ G + PPE+ I LS + A LARR V DEP+A+ Sbjct: 21 RGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAVAQPDAKDTPDEPWAF 80 Query: 327 ESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYLG----XQNVAYLVVA 464 +REFLRK +GKEV F ++ P GRE+G +YLG +N+A +VA Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLGKDTNGENIAESLVA 129 Score = 43.5 bits (101), Expect = 3e-04 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 20/121 (16%) Frame = +3 Query: 180 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 329 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 330 SREFLRKLCVGKEVTFRVDYTAPN----------IGREFGTVYLGXQNVAYLVVAAXWAR 479 +REFLRK +GK+V VDY P R TV +G N+A +V+ A Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRPASPATDTVPAFSERTCATVTIGGINIAEALVSKGLAT 461 Query: 480 V 482 V Sbjct: 462 V 462
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 78.6 bits (192), Expect = 8e-15 Identities = 51/129 (39%), Positives = 71/129 (55%), Gaps = 19/129 (14%) Frame = +3 Query: 135 AIMASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR 296 A A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LAR Sbjct: 2 ASSAQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLAR 61 Query: 297 RGGV---------DEPFAWESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYLG----X 437 R DEP+A+ +REFLRK +GKEV F ++ P GRE+G +YLG Sbjct: 62 RAAATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLGKDTNG 120 Query: 438 QNVAYLVVA 464 +N+A +VA Sbjct: 121 ENIAESLVA 129 Score = 42.7 bits (99), Expect = 5e-04 Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 20/121 (16%) Frame = +3 Query: 180 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 329 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 401 Query: 330 SREFLRKLCVGKEVTFRVDYTAPN----------IGREFGTVYLGXQNVAYLVVAAXWAR 479 +REFLRK +GK+V VDY P R TV +G N+A +V+ A Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLAT 461 Query: 480 V 482 V Sbjct: 462 V 462
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 78.2 bits (191), Expect = 1e-14 Identities = 50/126 (39%), Positives = 70/126 (55%), Gaps = 19/126 (15%) Frame = +3 Query: 144 ASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGG 305 A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 4 AQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAA 63 Query: 306 V---------DEPFAWESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYLG----XQNV 446 DEP+A+ +REFLRK +GKEV F ++ P GRE+G +YLG +N+ Sbjct: 64 ATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLGKDTNGENI 122 Query: 447 AYLVVA 464 A +VA Sbjct: 123 AESLVA 128 Score = 43.1 bits (100), Expect = 4e-04 Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 20/121 (16%) Frame = +3 Query: 180 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 329 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 345 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 400 Query: 330 SREFLRKLCVGKEVTFRVDYTAPN----------IGREFGTVYLGXQNVAYLVVAAXWAR 479 +REFLRK +GK+V+ VDY P R TV +G N+A +V+ A Sbjct: 401 AREFLRKKLIGKKVSVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLAT 460 Query: 480 V 482 V Sbjct: 461 V 461
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 77.0 bits (188), Expect = 2e-14 Identities = 45/110 (40%), Positives = 63/110 (57%), Gaps = 13/110 (11%) Frame = +3 Query: 174 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGV---------DEPFAW 326 RG +K V SG +++ G + PPE+ I LS + A LARR DEP+A+ Sbjct: 21 RGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAF 80 Query: 327 ESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYLG----XQNVAYLVVA 464 +REFLRK +GKEV F ++ P GRE+G +YLG +N+A +VA Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLGKDTNGENIAESLVA 129 Score = 43.5 bits (101), Expect = 3e-04 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 20/121 (16%) Frame = +3 Query: 180 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 329 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 330 SREFLRKLCVGKEVTFRVDYTAPN----------IGREFGTVYLGXQNVAYLVVAAXWAR 479 +REFLRK +GK+V VDY P R TV +G N+A +V+ A Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLAT 461 Query: 480 V 482 V Sbjct: 462 V 462
>VG20_BPT4 (P13334) Structural protein of head (Tail tube protein Gp20)| Length = 524 Score = 32.3 bits (72), Expect = 0.67 Identities = 13/47 (27%), Positives = 27/47 (57%) Frame = -3 Query: 443 VLXAEVDSAKFSPDVRSCVIHSECDLLSYAKFPQKLPAFPSKWLIDS 303 V+ +D +KFSP +++ ++ D+L++ F +K +W +DS Sbjct: 108 VVALNLDKSKFSPKIKNMMLDEFSDVLNHLSFQRKGSDHFRRWYVDS 154
>GBLP_HYDAT (Q25189) Guanine nucleotide-binding protein beta subunit-like| protein (Receptor of activated protein kinase C) (RACK) Length = 317 Score = 31.6 bits (70), Expect = 1.2 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = +1 Query: 367 RSHSEWITQLLTSGEN--LALSTSAXRTLPTWWLLXD 471 + H+ W+TQ+ T+ +N L LS S +TL W L D Sbjct: 11 KGHNGWVTQIATTPQNPDLILSASRDKTLIQWQLTRD 47
>Y38K_CORSE (Q39635) Hypothetical 38.1 kDa protein| Length = 338 Score = 30.4 bits (67), Expect = 2.6 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +3 Query: 315 PFAWESREFLRKLCVGKEVTFRVDYTAPNIGREFGTVYLGXQ 440 PF E++E L KL VGK +T + Y GR G +Y Q Sbjct: 240 PFGKEAKEELIKLVVGKCLTVHI-YEEDRYGRSVGDIYCNGQ 280
>MTFA_MANSM (Q65U59) Putative RNA 2'-O-ribose methyltransferase mtfA (EC| 2.1.1.-) Length = 363 Score = 30.0 bits (66), Expect = 3.3 Identities = 16/55 (29%), Positives = 26/55 (47%) Frame = -3 Query: 470 SCSNHQVGNVLXAEVDSAKFSPDVRSCVIHSECDLLSYAKFPQKLPAFPSKWLID 306 + S H G + D KF P RS + CD++ P ++ A +KWL++ Sbjct: 251 AASLHDTGRIDHCPEDGFKFQPPKRSKIDWLVCDMVEQ---PIRIAALIAKWLVN 302
>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding| protein MBD6) Length = 1003 Score = 29.6 bits (65), Expect = 4.4 Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 2/111 (1%) Frame = -1 Query: 349 FLRNSLLSQANGSSTPPRRA-SLGAIRYDRVMDFSGGISALVLPMMRRQSPEVTAFTLPL 173 FL +SLLS A + PP S R R S S+ + P RR T F L Sbjct: 318 FLASSLLSAAAKAQHPPLPPPSTLQGRRPRAQAPSASHSSSLRPSQRRPRRPPTVFRLLE 377 Query: 172 SH-PEAPVFDAMIAPWDWPAASGLRLPIRDPGEGVWPAG*SLLSRPDPDPN 23 P+ P AP P LP +P + + P+ SLL P P P+ Sbjct: 378 GRGPQTPRRSRPRAPA--PVPQPFSLP--EPSQPILPSVLSLLGLPTPGPS 424
>HISX_BRAJA (P59397) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 431 Score = 29.6 bits (65), Expect = 4.4 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Frame = +3 Query: 111 LAAGQSQGAIMASNTGASGWLRGKVKAV----TSGDCLLIMGSTKAEIPPEKSITLSYLM 278 + AG S+ ++A +TG + W+ + A TS +LI S + EK++ Sbjct: 232 MIAGPSEVLVIADDTGNADWIAADLLAQAEHDTSAQSILITDSARLAADVEKAVEAQLKT 291 Query: 279 APRLA 293 PR A Sbjct: 292 LPRTA 296
>CARX_BACSU (P36838) Carbamoyl-phosphate synthase arginine-specific small chain| (EC 6.3.5.5) (Carbamoyl-phosphate synthetase glutamine chain) Length = 353 Score = 29.3 bits (64), Expect = 5.7 Identities = 15/52 (28%), Positives = 23/52 (44%) Frame = -3 Query: 452 VGNVLXAEVDSAKFSPDVRSCVIHSECDLLSYAKFPQKLPAFPSKWLIDSTT 297 +GN E D P V++ V++ CD S+ + L + KW I T Sbjct: 57 IGNYGINEKDFESKKPQVKAAVVYEACDHFSHYEAVYSLKEYLQKWNIPLLT 108
>GBLP_BRARE (O42248) Guanine nucleotide-binding protein beta subunit 2-like 1| (Receptor of activated protein kinase C) (RACK) Length = 317 Score = 28.9 bits (63), Expect = 7.5 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = +1 Query: 367 RSHSEWITQLLTSGE--NLALSTSAXRTLPTWWLLXD 471 + HS W+TQ+ T+ + ++ LS S +T+ W L D Sbjct: 12 KGHSGWVTQIATTPQFPDMILSASRDKTIIMWKLTRD 48
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 28.9 bits (63), Expect = 7.5 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +3 Query: 114 AAG--QSQGAIMASNTGASGWLRGKVKAVTSGDCLLIMGS 227 AAG +S+GA + G RG K+ T+GDC GS Sbjct: 66 AAGGAESRGAALGGAADGEGPARGAAKSSTNGDCRRFRGS 105
>GBLP_TOBAC (P49026) Guanine nucleotide-binding protein beta subunit-like| protein Length = 326 Score = 28.5 bits (62), Expect = 9.7 Identities = 10/38 (26%), Positives = 25/38 (65%), Gaps = 2/38 (5%) Frame = +1 Query: 367 RSHSEWITQLLTSGEN--LALSTSAXRTLPTWWLLXDG 474 R+H++W+T + T+ +N + +++S +++ W + DG Sbjct: 13 RAHTDWVTAIATAVDNSDMIVTSSRDKSIIVWSITKDG 50
>GBLP_NICPL (P93340) Guanine nucleotide-binding protein beta subunit-like| protein Length = 326 Score = 28.5 bits (62), Expect = 9.7 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 2/38 (5%) Frame = +1 Query: 367 RSHSEWITQLLTSGEN--LALSTSAXRTLPTWWLLXDG 474 R+H++W+T + T +N + +++S +++ W L DG Sbjct: 13 RAHTDWVTAIATPVDNSDMIVTSSRDKSIIVWSLTKDG 50
>KAPR_USTMA (P49605) cAMP-dependent protein kinase regulatory subunit (PKA| regulatory subunit) Length = 522 Score = 28.5 bits (62), Expect = 9.7 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 4/76 (5%) Frame = -1 Query: 322 ANGSSTPPRRASLGAIRYDRVMDFSGG----ISALVLPMMRRQSPEVTAFTLPLSHPEAP 155 A G ++P +RASL D +GG +++L +PM QSP+ T + P AP Sbjct: 78 APGLASPTQRASL--FHSDPFAPGAGGGALPVASLAVPMDASQSPDSTPAPATPAAPAAP 135 Query: 154 VFDAMIAPWDWPAASG 107 A AP+ SG Sbjct: 136 A--APAAPFSSLGGSG 149
>MTFA_PASMU (Q9CN71) Putative RNA 2'-O-ribose methyltransferase mtfA (EC| 2.1.1.-) Length = 365 Score = 28.5 bits (62), Expect = 9.7 Identities = 15/55 (27%), Positives = 24/55 (43%) Frame = -3 Query: 470 SCSNHQVGNVLXAEVDSAKFSPDVRSCVIHSECDLLSYAKFPQKLPAFPSKWLID 306 + S H G + D KF P RS + CD++ P ++ KWL++ Sbjct: 251 AASLHDTGRIEHCAEDGFKFQPPKRSKIDWLVCDMVEQ---PSRISQLILKWLVN 302
>RIBD2_BUCAI (P57534) 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC| 1.1.1.193) (HTP reductase) Length = 207 Score = 28.5 bits (62), Expect = 9.7 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = -3 Query: 389 VIHSECDLLSYAKFPQKLPAFPSKWLIDSTTTSQPWGHKV*QSDGLLW 246 V + E D + + FP K+ P + +IDS QP H + ++ G +W Sbjct: 44 VRYKELDKKTLSIFPNKIFQHPIRVIIDSKNRVQP-SHNIIKTKGKIW 90 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,478,493 Number of Sequences: 219361 Number of extensions: 1399185 Number of successful extensions: 3848 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3747 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3837 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
