ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl26a08 |
|---|---|
| Clone Library Name | barley_pub |
>MFP_ORYSA (Q8W1L6) Peroxisomal fatty acid beta-oxidation multifunctional| protein (MFP) [Includes: Enoyl-CoA hydratase (EC 4.2.1.17); 3-2-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3); 3-hydroxyacyl-CoA dehydrogenase Length = 725 Score = 173 bits (439), Expect = 1e-43 Identities = 83/102 (81%), Positives = 95/102 (93%) Frame = +1 Query: 70 AGSIRVTMEVGADGVALITICNPPVNALHPIIIQGLKDKYAEAFHRDDVRAVVLTGAVGK 249 AG+IRVTMEVGADGVA++TICNPPVNALHPIIIQGLK+KYAEA RDDV+A+VLTGA GK Sbjct: 2 AGAIRVTMEVGADGVAVVTICNPPVNALHPIIIQGLKEKYAEAMDRDDVKAIVLTGAGGK 61 Query: 250 FCGGFDINVFSKVHDTGDVSHLPDMSFELVSNMMEDGKKPSV 375 FCGGFDINVF++VH TG+VS +PD+S ELVSN+ME GKKPSV Sbjct: 62 FCGGFDINVFTEVHKTGNVSLMPDVSVELVSNLMEAGKKPSV 103
>MFPA_CUCSA (Q39659) Glyoxysomal fatty acid beta-oxidation multifunctional| protein MFP-a [Includes: Enoyl-CoA hydratase (EC 4.2.1.17); 3-2-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3); 3-hydroxyacyl-CoA dehydrogenase Length = 725 Score = 97.4 bits (241), Expect = 1e-20 Identities = 47/99 (47%), Positives = 69/99 (69%), Gaps = 1/99 (1%) Frame = +1 Query: 82 RVTMEVGADGVALITICNPPVNALHPIIIQGLKDKYAEAFHRDDVRAVVLTGAVGKFCGG 261 R MEVG DGVA+ITI NPPVN+L ++ L+D Y +A RDDV+A+V+TGA GKF GG Sbjct: 8 RTVMEVGTDGVAIITIINPPVNSLSFDVLFSLRDSYEQALRRDDVKAIVVTGAKGKFSGG 67 Query: 262 FDINVFSKVH-DTGDVSHLPDMSFELVSNMMEDGKKPSV 375 FDI F + G+ ++ ++S E+++++ E +KP+V Sbjct: 68 FDITAFGVLQGGKGEQPNVRNISIEMITDIFEAARKPAV 106
>MFPA_BRANA (O49809) Glyoxysomal fatty acid beta-oxidation multifunctional| protein MFP-a [Includes: Enoyl-CoA hydratase (EC 4.2.1.17); 3-2-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3); 3-hydroxyacyl-CoA dehydrogenase Length = 725 Score = 93.6 bits (231), Expect = 2e-19 Identities = 49/106 (46%), Positives = 72/106 (67%), Gaps = 1/106 (0%) Frame = +1 Query: 61 MAAAGSIRVTMEVGADGVALITICNPPVNALHPIIIQGLKDKYAEAFHRDDVRAVVLTGA 240 MA+ T+EVGADGVA+IT+ NPPVN+L ++ LK Y EA R+DV+A+V+TGA Sbjct: 1 MASRTKGTTTIEVGADGVAVITLINPPVNSLSFDVLYSLKSNYEEALSRNDVKAIVVTGA 60 Query: 241 VGKFCGGFDINVFSKVH-DTGDVSHLPDMSFELVSNMMEDGKKPSV 375 GKF GGFDI+ F ++ T + +S +++++++E KKPSV Sbjct: 61 KGKFSGGFDISGFGEIQKGTMKEPKVGYISIDILTDLLEAAKKPSV 106
>ECHP_RAT (P07896) Peroxisomal bifunctional enzyme (PBE) (PBFE) [Includes:| Enoyl-CoA hydratase (EC 4.2.1.17); 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)] Length = 721 Score = 55.5 bits (132), Expect = 5e-08 Identities = 25/57 (43%), Positives = 39/57 (68%) Frame = +1 Query: 112 VALITICNPPVNALHPIIIQGLKDKYAEAFHRDDVRAVVLTGAVGKFCGGFDINVFS 282 +A+I +CNPPVNA+ P +I+ +++ +A V+A+V+ GA G FC G DI+ FS Sbjct: 10 LAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFS 66
>ECHP_CAVPO (P55100) Peroxisomal bifunctional enzyme (PBE) (PBFE) [Includes:| Enoyl-CoA hydratase (EC 4.2.1.17); 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)] Length = 725 Score = 52.4 bits (124), Expect = 4e-07 Identities = 24/57 (42%), Positives = 37/57 (64%) Frame = +1 Query: 112 VALITICNPPVNALHPIIIQGLKDKYAEAFHRDDVRAVVLTGAVGKFCGGFDINVFS 282 +ALI + NPPVNA+ P +I G+K+ +A ++ +V++GA FC G DI+ FS Sbjct: 10 LALIRLRNPPVNAISPAVIHGIKEGLQKAMSDYTIKGIVISGANNIFCAGADIHGFS 66
>ECHP_MOUSE (Q9DBM2) Peroxisomal bifunctional enzyme (PBE) (PBFE) [Includes:| Enoyl-CoA hydratase (EC 4.2.1.17); 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)] Length = 717 Score = 51.6 bits (122), Expect = 7e-07 Identities = 24/56 (42%), Positives = 36/56 (64%) Frame = +1 Query: 112 VALITICNPPVNALHPIIIQGLKDKYAEAFHRDDVRAVVLTGAVGKFCGGFDINVF 279 +A+I +CNPPVNA+ P +I +++ +A VRA+V+ GA FC G DI+ F Sbjct: 10 LAMIRLCNPPVNAISPTVITEVRNGLQKASLDHTVRAIVICGANDNFCAGADIHGF 65
>ECHP_HUMAN (Q08426) Peroxisomal bifunctional enzyme (PBE) (PBFE) [Includes:| Enoyl-CoA hydratase (EC 4.2.1.17); 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)] Length = 722 Score = 48.5 bits (114), Expect = 6e-06 Identities = 23/59 (38%), Positives = 37/59 (62%) Frame = +1 Query: 106 DGVALITICNPPVNALHPIIIQGLKDKYAEAFHRDDVRAVVLTGAVGKFCGGFDINVFS 282 + +ALI + NPPVNA+ +++ +K+ +A ++A+V+ GA GKF G DI FS Sbjct: 8 NALALIRLRNPPVNAISTTLLRDIKEGLQKAGRDHTIKAIVICGAEGKFSAGADIRGFS 66
>MENB_ECOLI (P0ABU0) Naphthoate synthase (EC 4.1.3.36) (Dihydroxynaphthoic acid| synthetase) (DHNA synthetase) Length = 285 Score = 46.6 bits (109), Expect = 2e-05 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 5/88 (5%) Frame = +1 Query: 85 VTMEVGADGVALITICNPPV-NALHPIIIQGLKDKYAEAFHRDDVRAVVLTGAVGK-FCG 258 + E DG+A ITI P V NA P+ ++ + A+A + D++ ++LTGA K FC Sbjct: 25 IRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCS 84 Query: 259 GFDINV---FSKVHDTGDVSHLPDMSFE 333 G D V + D V HL + F+ Sbjct: 85 GGDQKVRGDYGGYKDDSGVHHLNVLDFQ 112
>MENB_ECOL6 (P0ABU1) Naphthoate synthase (EC 4.1.3.36) (Dihydroxynaphthoic acid| synthetase) (DHNA synthetase) Length = 285 Score = 46.6 bits (109), Expect = 2e-05 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 5/88 (5%) Frame = +1 Query: 85 VTMEVGADGVALITICNPPV-NALHPIIIQGLKDKYAEAFHRDDVRAVVLTGAVGK-FCG 258 + E DG+A ITI P V NA P+ ++ + A+A + D++ ++LTGA K FC Sbjct: 25 IRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCS 84 Query: 259 GFDINV---FSKVHDTGDVSHLPDMSFE 333 G D V + D V HL + F+ Sbjct: 85 GGDQKVRGDYGGYKDDSGVHHLNVLDFQ 112
>FADJ_IDILO (Q5QXM1) Fatty acid oxidation complex alpha subunit [Includes:| Enoyl-CoA hydratase (EC 4.2.1.17); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35); 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)] Length = 708 Score = 36.2 bits (82), Expect = 0.031 Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 9/85 (10%) Frame = +1 Query: 88 TMEVGADGVALITICNPPVNALHPIIIQGLKDKYAEAF--------HRDDVRAVV-LTGA 240 TMEV DGVA+ITI P + + LKD +AE D V+ VV ++G Sbjct: 8 TMEVRDDGVAVITIDVPGES------MNTLKDSFAEEVGSLMNRLESDDSVKGVVFISGK 61 Query: 241 VGKFCGGFDINVFSKVHDTGDVSHL 315 G F G DIN+ + D L Sbjct: 62 PGSFIAGADINMIDGCENAVDAESL 86
>ECHH_RHOCA (P24162) Probable enoyl-CoA hydratase (EC 4.2.1.17)| Length = 257 Score = 35.0 bits (79), Expect = 0.068 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%) Frame = +1 Query: 103 ADGVALITICNPPV-NALHPIIIQGLKDKYAEAFHR--DDVRAVVLTGAVGKFCGGFDI 270 ++G+A+IT+ P V NAL+ ++ + A HR + RA+VLTG+ FC G D+ Sbjct: 11 SEGLAVITLDRPEVMNALNA----AMRHELTAALHRARGEARAIVLTGSGRAFCSGQDL 65
>ECH12_MYCLE (P53526) Probable enoyl-CoA hydratase echA12 (EC 4.2.1.17)| Length = 294 Score = 33.5 bits (75), Expect = 0.20 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = +1 Query: 85 VTMEVGADGVALITICNPP-VNALHPIIIQGLKDKYAEAFHRDDVRAVVLTGAVGKFCGG 261 V ++ VALIT+ P +N++ +++ LK + VR VVLTGA FC G Sbjct: 22 VVLDFPRPEVALITLNRPGRMNSMALDLMKSLKQVLKRITYDHSVRVVVLTGAGRGFCSG 81 Query: 262 FD 267 D Sbjct: 82 AD 83
>DXR_NEIMB (Q9K1G8) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 394 Score = 32.0 bits (71), Expect = 0.58 Identities = 19/70 (27%), Positives = 34/70 (48%) Frame = +1 Query: 103 ADGVALITICNPPVNALHPIIIQGLKDKYAEAFHRDDVRAVVLTGAVGKFCGGFDINVFS 282 A+G A++ PV++ H + Q L YA + + +++LT + G F D+N F Sbjct: 143 ANGAAVL-----PVDSEHNAVFQVLPRDYAGRLNEHGIASIILTASGGPFLTA-DLNTFD 196 Query: 283 KVHDTGDVSH 312 ++ V H Sbjct: 197 RITPAQAVKH 206
>AMGO1_HUMAN (Q86WK6) Amphoterin-induced protein 1 precursor (Alivin-2)| Length = 493 Score = 32.0 bits (71), Expect = 0.58 Identities = 20/47 (42%), Positives = 25/47 (53%) Frame = -2 Query: 387 LNCSDRRLFAIFHHIRHELKRHIWQMRHISSVMNF*EYIYIEASTKL 247 LNC D L+ +F H WQ R +SSVM+F E +Y S KL Sbjct: 223 LNC-DCELYQLFSH---------WQYRQLSSVMDFQEDLYCMNSKKL 259
>ECH14_MYCTU (P64018) Probable enoyl-CoA hydratase echA14 (EC 4.2.1.17)| Length = 256 Score = 32.0 bits (71), Expect = 0.58 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = +1 Query: 112 VALITICNPPV-NALHPIIIQGLKDKYAEAFHRDDVRAVVLTGAVGKFCGGFDIN 273 VALIT+ +P NA+ + L+ A DV AVV+TGA FC G D++ Sbjct: 15 VALITVNDPDRRNAVTDEMSAQLRAAIQRAEGDPDVHAVVVTGAGKAFCAGADLS 69
>ECH14_MYCBO (P64019) Probable enoyl-CoA hydratase echA14 (EC 4.2.1.17)| Length = 256 Score = 32.0 bits (71), Expect = 0.58 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = +1 Query: 112 VALITICNPPV-NALHPIIIQGLKDKYAEAFHRDDVRAVVLTGAVGKFCGGFDIN 273 VALIT+ +P NA+ + L+ A DV AVV+TGA FC G D++ Sbjct: 15 VALITVNDPDRRNAVTDEMSAQLRAAIQRAEGDPDVHAVVVTGAGKAFCAGADLS 69
>ECHA6_MYCLE (Q50130) Probable enoyl-CoA hydratase echA6 (EC 4.2.1.17)| Length = 247 Score = 31.2 bits (69), Expect = 0.99 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%) Frame = +1 Query: 103 ADGVALITICNPPV-NALHPIIIQGLKDKYAEAFHRDD---VRAVVLTGAVGKFCGGFDI 270 A+GV I + P NAL+ +I+ L++ +A D R +VLTG FC G D+ Sbjct: 7 AEGVMTIELQRPERRNALNSQLIEKLREAVQKASSADSEVSTRVIVLTGQGTVFCAGADL 66 Query: 271 N 273 + Sbjct: 67 S 67
>D3D2_HUMAN (P42126) 3,2-trans-enoyl-CoA isomerase, mitochondrial precursor (EC| 5.3.3.8) (Dodecenoyl-CoA isomerase) (Delta(3),delta(2)-enoyl-CoA isomerase) (D3,D2-enoyl-CoA isomerase) Length = 302 Score = 30.8 bits (68), Expect = 1.3 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = +1 Query: 73 GSIRVTMEVGAD-GVALITICNPPVNALHPIIIQGLKDKYAEAFHRDDVRAVVLTG-AVG 246 GS RV +E A GVA++ NPPVN+L + L + + R V+LT G Sbjct: 43 GSQRVLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPG 102 Query: 247 KFCGGFDI 270 F G D+ Sbjct: 103 VFSAGLDL 110
>EXO84_YARLI (Q6C238) Exocyst complex component EXO84| Length = 657 Score = 30.4 bits (67), Expect = 1.7 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -1 Query: 394 QGLELQRQKAFCHLPSYSTRAQKTYLADATHLQ 296 Q L RQ A H+ + + + QK Y+ D+THLQ Sbjct: 8 QSLRSHRQTANPHVMAAAVQKQKPYIQDSTHLQ 40
>AMGO1_MOUSE (Q80ZD8) Amphoterin-induced protein 1 precursor (Alivin-2)| Length = 492 Score = 30.4 bits (67), Expect = 1.7 Identities = 19/47 (40%), Positives = 25/47 (53%) Frame = -2 Query: 387 LNCSDRRLFAIFHHIRHELKRHIWQMRHISSVMNF*EYIYIEASTKL 247 L C D +L+ +F H WQ R +SSVM+F E +Y S KL Sbjct: 223 LEC-DCKLYQLFSH---------WQYRQLSSVMDFQEDLYCMHSKKL 259
>AMGO1_RAT (Q80ZD7) Amphoterin-induced protein 1 precursor (Alivin-2)| Length = 493 Score = 30.4 bits (67), Expect = 1.7 Identities = 19/47 (40%), Positives = 25/47 (53%) Frame = -2 Query: 387 LNCSDRRLFAIFHHIRHELKRHIWQMRHISSVMNF*EYIYIEASTKL 247 L C D +L+ +F H WQ R +SSVM+F E +Y S KL Sbjct: 223 LEC-DCKLYQLFSH---------WQYRQLSSVMDFQEDLYCVHSKKL 259
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 30.0 bits (66), Expect = 2.2 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = -3 Query: 308 DTSPVS*TFENTFISKPPQNLPTAP 234 + SP+S FE + +S PP+ LPT+P Sbjct: 541 EASPLSPPFEESPLSPPPEELPTSP 565
>ECH12_MYCBO (Q7U004) Probable enoyl-CoA hydratase echA12 (EC 4.2.1.17)| Length = 285 Score = 30.0 bits (66), Expect = 2.2 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +1 Query: 112 VALITICNPP-VNALHPIIIQGLKDKYAEAFHRDDVRAVVLTGAVGKFCGGFD 267 +A IT+ P +N++ ++ LK+ A+ + + VR VVLTGA F G D Sbjct: 29 IAQITLNRPERMNSMAFDVMVPLKEALAQVSYDNSVRVVVLTGAGRGFSSGAD 81
>D3D2_MOUSE (P42125) 3,2-trans-enoyl-CoA isomerase, mitochondrial precursor (EC| 5.3.3.8) (Dodecenoyl-CoA isomerase) (Delta(3),delta(2)-enoyl-CoA isomerase) (D3,D2-enoyl-CoA isomerase) Length = 289 Score = 30.0 bits (66), Expect = 2.2 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = +1 Query: 82 RVTMEV-GADGVALITICNPPVNALHPIIIQGLKDKYAEAFHRDDVRAVVLTG-AVGKFC 255 RV +E G GVA++ + NPPVN+L + + + +R V+LT G F Sbjct: 33 RVLVETEGPAGVAVMKLRNPPVNSLSLECLTEFTISLEKLENDKSIRGVILTSECPGIFS 92 Query: 256 GGFDI 270 G D+ Sbjct: 93 AGLDL 97
>DXR_NEIMA (Q9JX33) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 394 Score = 29.3 bits (64), Expect = 3.7 Identities = 18/70 (25%), Positives = 32/70 (45%) Frame = +1 Query: 103 ADGVALITICNPPVNALHPIIIQGLKDKYAEAFHRDDVRAVVLTGAVGKFCGGFDINVFS 282 A+G A++ PV++ H + Q L Y + + +++LT + G F D+N F Sbjct: 143 ANGAAVL-----PVDSEHNAVFQVLPRDYTGRLNEHGIASIILTASGGPFLTA-DLNTFD 196 Query: 283 KVHDTGDVSH 312 + V H Sbjct: 197 SITPDQAVKH 206
>ECH12_MYCTU (O53163) Probable enoyl-CoA hydratase echA12 (EC 4.2.1.17)| Length = 285 Score = 29.3 bits (64), Expect = 3.7 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +1 Query: 112 VALITICNPP-VNALHPIIIQGLKDKYAEAFHRDDVRAVVLTGAVGKFCGGFD 267 +A IT+ P +N++ ++ LK+ A+ + + VR VVLTGA F G D Sbjct: 29 IAQITLNRPERMNSMAFDVMVPLKEALAQVSYDNSVRVVVLTGAGRGFSPGAD 81
>PAAG_ECOLI (P77467) Probable enoyl-CoA hydratase paaG (EC 4.2.1.17)| Length = 262 Score = 29.3 bits (64), Expect = 3.7 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = +1 Query: 109 GVALITICNPP-VNALHPIIIQGLKDKYAEAFHRDDVRAVVLTGAVGKFCGGFDIN 273 GV +T+ P +N+ + + L + + D +R ++LTGA FC G D+N Sbjct: 12 GVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLN 67
>ECHA8_MYCTU (P64016) Probable enoyl-CoA hydratase echA8 (EC 4.2.1.17)| Length = 257 Score = 29.3 bits (64), Expect = 3.7 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = +1 Query: 112 VALITICNPP-VNALHPIIIQGLKDKYAEAFHRDDVRAVVLTGAVGKFCGGFDI 270 V +IT+ P +NAL+ ++ + E D+ A+++TG+ F G DI Sbjct: 14 VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADI 67
>ECHA8_MYCBO (P64017) Probable enoyl-CoA hydratase echA8 (EC 4.2.1.17)| Length = 257 Score = 29.3 bits (64), Expect = 3.7 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = +1 Query: 112 VALITICNPP-VNALHPIIIQGLKDKYAEAFHRDDVRAVVLTGAVGKFCGGFDI 270 V +IT+ P +NAL+ ++ + E D+ A+++TG+ F G DI Sbjct: 14 VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADI 67
>CHAD_HUMAN (O15335) Chondroadherin precursor (Cartilage leucine-rich protein)| Length = 359 Score = 29.3 bits (64), Expect = 3.7 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = -3 Query: 281 ENTFISKPPQNLPTAPVSTTALTSSRWKASAYL-SLSPWM 165 EN +++ P N P + T ALT++ WK + L L W+ Sbjct: 276 ENNRLNQLPSNFPFDSLETLALTNNPWKCTCQLRGLRRWL 315
>YM96_YEAST (Q04893) Hypothetical 113.1 kDa protein in PRE5-FET4 intergenic| region Length = 1140 Score = 28.9 bits (63), Expect = 4.9 Identities = 26/97 (26%), Positives = 47/97 (48%) Frame = -3 Query: 356 SSIIFDTSSKDISGRCDTSPVS*TFENTFISKPPQNLPTAPVSTTALTSSRWKASAYLSL 177 SS++ TSS S +T P F +T +S + ++PVS+ A +++ S+ S Sbjct: 228 SSLLSSTSSPASSTISETLP----FSSTILS-----ITSSPVSSEAPSATSSSVSSEASS 278 Query: 176 SPWMMMGCRALTGGLQMVMSATPSAPTSMVTRIDPAA 66 S + A +V S PS+ +S+V+ P++ Sbjct: 279 STSSSVSSEAPLATSSVVSSEAPSSTSSVVSSEAPSS 315
>DAN4_YEAST (P47179) Cell wall protein DAN4 precursor| Length = 1161 Score = 28.5 bits (62), Expect = 6.4 Identities = 20/85 (23%), Positives = 32/85 (37%) Frame = -3 Query: 338 TSSKDISGRCDTSPVS*TFENTFISKPPQNLPTAPVSTTALTSSRWKASAYLSLSPWMMM 159 TS+ + T+P + T T + PT + T T+S ++ S +P Sbjct: 194 TSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTPTTSTTSTTSQTSTKSTTPTTSS 253 Query: 158 GCRALTGGLQMVMSATPSAPTSMVT 84 T S T +APT+ T Sbjct: 254 TSTTPTTSTTPTTSTTSTAPTTSTT 278
>YLP3_PSEPU (P31049) Hypothetical 44.7 kDa methyltransferase in lpd-3 5'region| (EC 2.1.1.-) (ORF3) Length = 394 Score = 28.5 bits (62), Expect = 6.4 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 6/57 (10%) Frame = -1 Query: 406 HHQEQGLELQRQKAFCHLPSYSTRAQKTYLADATH------LQCHELLRIHLYRSLH 254 HH + LE Q KA +P + R + YLA + + H++L + Y H Sbjct: 326 HHWSENLENQLHKAAALVPEKTLRIWRLYLAGCAYAFEKGWINLHQILAVKPYADGH 382
>CRT_CLOAB (P52046) 3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) (Crotonase)| Length = 261 Score = 28.5 bits (62), Expect = 6.4 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Frame = +1 Query: 112 VALITICNPP-VNALHPIIIQGLKDKYAEAFHRDDVRAVVLTGAVGK-FCGGFDINVFSK 285 VA++TI P +NAL+ ++ + E + +V AV+LTGA K F G DI+ + Sbjct: 14 VAVVTINRPKALNALNSDTLKEMDYVIGEIENDSEVLAVILTGAGEKSFVAGADISEMKE 73 Query: 286 VH 291 ++ Sbjct: 74 MN 75
>Y642_MYCPN (P75155) Hypothetical lipoprotein MG439 homolog 4 precursor| (E09_orf279) Length = 279 Score = 28.1 bits (61), Expect = 8.3 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +1 Query: 232 TGAVGKFCGGFDINVFSKVHDTGDVSHLPDMSFELVSNMM 351 TG KF F +FS TG L D SF++++NM+ Sbjct: 192 TGDKAKFTADF---IFSYTPPTGGTRSLTDKSFDVITNMI 228
>DXR_NEIG1 (Q5F5X0) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 394 Score = 28.1 bits (61), Expect = 8.3 Identities = 18/70 (25%), Positives = 33/70 (47%) Frame = +1 Query: 103 ADGVALITICNPPVNALHPIIIQGLKDKYAEAFHRDDVRAVVLTGAVGKFCGGFDINVFS 282 A+G A++ PV++ H I Q L Y + + + +++LT + G F D++ F Sbjct: 143 ANGAAVL-----PVDSEHNAIFQVLPRDYTDRLNEHGIDSIILTASGGPFL-TTDLSTFD 196 Query: 283 KVHDTGDVSH 312 + V H Sbjct: 197 SITPEQAVKH 206
>ATPB_PRODI (P50003) ATP synthase beta chain (EC 3.6.3.14)| Length = 483 Score = 28.1 bits (61), Expect = 8.3 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +1 Query: 220 AVVLTGAVGKFCGGFDINVFSKVHDTGDVSHLPDMSFELVSNMME 354 A V TGA GK+ D K+ +G++ LP+ +F LV ++ E Sbjct: 428 AEVFTGAPGKYVSLEDTIKGFKMILSGELDDLPEQAFYLVGDIQE 472 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,639,856 Number of Sequences: 219361 Number of extensions: 734230 Number of successful extensions: 2606 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 2559 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2603 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
