ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl26a08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_464920.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2793 Score = 285 bits (144), Expect = 6e-74 Identities = 288/336 (85%) Strand = Plus / Plus Query: 69 ggcggggtcgatccgcgtcaccatggaggtgggcgccgacggcgtcgcgctcatcaccat 128 ||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 107 ggcgggggcgatccgcgtcaccatggaggtgggcgccgacggcgtcgcggtcgtcaccat 166 Query: 129 ctgcaacccgccggtcaatgctctacaccccatcatcatccaggggctcaaggacaagta 188 |||||||||||| |||||||| || || ||||||||||||||||| | ||||| ||||| Sbjct: 167 ctgcaacccgcccgtcaatgcgctgcatcccatcatcatccagggattgaaggagaagta 226 Query: 189 cgccgaggccttccaccgcgacgacgtcagggccgtcgtgctcaccggcgcggtgggcaa 248 ||| ||||| | | ||||||||||||| |||| ||||||||||||| || | ||||| Sbjct: 227 cgcggaggcgatggatcgcgacgacgtcaaggccatcgtgctcaccggtgctggaggcaa 286 Query: 249 gttttgtggaggcttcgatataaatgtattctcaaaagttcatgacactggagatgtgtc 308 |||||||||||||| ||||| ||||| ||| || ||||||| | |||||| |||| || Sbjct: 287 attttgtggaggctttgatatcaatgtgttcacagaagttcacaagactggaaatgtatc 346 Query: 309 gcatctgccagatatgtcttttgagctcgtgtcgaatatgatggaagatggcaaaaagcc 368 | | |||| ||| | ||| ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 347 tcttatgcctgatgtatctgttgagcttgtgtcgaatttgatggaagcgggcaaaaagcc 406 Query: 369 ttctgtcgctgcaattcaaggccttgctcttggtgg 404 ||| || ||||| ||||||||||||||||||||||| Sbjct: 407 ttcagttgctgccattcaaggccttgctcttggtgg 442
>gb|AF442962.1|AF442962 Oryza sativa peroxisomal multifunctional protein mRNA, complete cds Length = 2637 Score = 285 bits (144), Expect = 6e-74 Identities = 288/336 (85%) Strand = Plus / Plus Query: 69 ggcggggtcgatccgcgtcaccatggaggtgggcgccgacggcgtcgcgctcatcaccat 128 ||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 185 ggcgggggcgatccgcgtcaccatggaggtgggcgccgacggcgtcgcggtcgtcaccat 244 Query: 129 ctgcaacccgccggtcaatgctctacaccccatcatcatccaggggctcaaggacaagta 188 |||||||||||| |||||||| || || ||||||||||||||||| | ||||| ||||| Sbjct: 245 ctgcaacccgcccgtcaatgcgctgcatcccatcatcatccagggattgaaggagaagta 304 Query: 189 cgccgaggccttccaccgcgacgacgtcagggccgtcgtgctcaccggcgcggtgggcaa 248 ||| ||||| | | ||||||||||||| |||| ||||||||||||| || | ||||| Sbjct: 305 cgcggaggcgatggatcgcgacgacgtcaaggccatcgtgctcaccggtgctggaggcaa 364 Query: 249 gttttgtggaggcttcgatataaatgtattctcaaaagttcatgacactggagatgtgtc 308 |||||||||||||| ||||| ||||| ||| || ||||||| | |||||| |||| || Sbjct: 365 attttgtggaggctttgatatcaatgtgttcacagaagttcacaagactggaaatgtatc 424 Query: 309 gcatctgccagatatgtcttttgagctcgtgtcgaatatgatggaagatggcaaaaagcc 368 | | |||| ||| | ||| ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 425 tcttatgcctgatgtatctgttgagcttgtgtcgaatttgatggaagcgggcaaaaagcc 484 Query: 369 ttctgtcgctgcaattcaaggccttgctcttggtgg 404 ||| || ||||| ||||||||||||||||||||||| Sbjct: 485 ttcagttgctgccattcaaggccttgctcttggtgg 520
>dbj|AK103620.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133M03, full insert sequence Length = 4430 Score = 285 bits (144), Expect = 6e-74 Identities = 288/336 (85%) Strand = Plus / Plus Query: 69 ggcggggtcgatccgcgtcaccatggaggtgggcgccgacggcgtcgcgctcatcaccat 128 ||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 116 ggcgggggcgatccgcgtcaccatggaggtgggcgccgacggcgtcgcggtcgtcaccat 175 Query: 129 ctgcaacccgccggtcaatgctctacaccccatcatcatccaggggctcaaggacaagta 188 |||||||||||| |||||||| || || ||||||||||||||||| | ||||| ||||| Sbjct: 176 ctgcaacccgcccgtcaatgcgctgcatcccatcatcatccagggattgaaggagaagta 235 Query: 189 cgccgaggccttccaccgcgacgacgtcagggccgtcgtgctcaccggcgcggtgggcaa 248 ||| ||||| | | ||||||||||||| |||| ||||||||||||| || | ||||| Sbjct: 236 cgcggaggcgatggatcgcgacgacgtcaaggccatcgtgctcaccggtgctggaggcaa 295 Query: 249 gttttgtggaggcttcgatataaatgtattctcaaaagttcatgacactggagatgtgtc 308 |||||||||||||| ||||| ||||| ||| || ||||||| | |||||| |||| || Sbjct: 296 attttgtggaggctttgatatcaatgtgttcacagaagttcacaagactggaaatgtatc 355 Query: 309 gcatctgccagatatgtcttttgagctcgtgtcgaatatgatggaagatggcaaaaagcc 368 | | |||| ||| | ||| ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 356 tcttatgcctgatgtatctgttgagcttgtgtcgaatttgatggaagcgggcaaaaagcc 415 Query: 369 ttctgtcgctgcaattcaaggccttgctcttggtgg 404 ||| || ||||| ||||||||||||||||||||||| Sbjct: 416 ttcagttgctgccattcaaggccttgctcttggtgg 451
>dbj|AK103234.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123F01, full insert sequence Length = 3428 Score = 285 bits (144), Expect = 6e-74 Identities = 288/336 (85%) Strand = Plus / Plus Query: 69 ggcggggtcgatccgcgtcaccatggaggtgggcgccgacggcgtcgcgctcatcaccat 128 ||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 109 ggcgggggcgatccgcgtcaccatggaggtgggcgccgacggcgtcgcggtcgtcaccat 168 Query: 129 ctgcaacccgccggtcaatgctctacaccccatcatcatccaggggctcaaggacaagta 188 |||||||||||| |||||||| || || ||||||||||||||||| | ||||| ||||| Sbjct: 169 ctgcaacccgcccgtcaatgcgctgcatcccatcatcatccagggattgaaggagaagta 228 Query: 189 cgccgaggccttccaccgcgacgacgtcagggccgtcgtgctcaccggcgcggtgggcaa 248 ||| ||||| | | ||||||||||||| |||| ||||||||||||| || | ||||| Sbjct: 229 cgcggaggcgatggatcgcgacgacgtcaaggccatcgtgctcaccggtgctggaggcaa 288 Query: 249 gttttgtggaggcttcgatataaatgtattctcaaaagttcatgacactggagatgtgtc 308 |||||||||||||| ||||| ||||| ||| || ||||||| | |||||| |||| || Sbjct: 289 attttgtggaggctttgatatcaatgtgttcacagaagttcacaagactggaaatgtatc 348 Query: 309 gcatctgccagatatgtcttttgagctcgtgtcgaatatgatggaagatggcaaaaagcc 368 | | |||| ||| | ||| ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 349 tcttatgcctgatgtatctgttgagcttgtgtcgaatttgatggaagcgggcaaaaagcc 408 Query: 369 ttctgtcgctgcaattcaaggccttgctcttggtgg 404 ||| || ||||| ||||||||||||||||||||||| Sbjct: 409 ttcagttgctgccattcaaggccttgctcttggtgg 444
>dbj|AK073294.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025B12, full insert sequence Length = 2793 Score = 278 bits (140), Expect = 1e-71 Identities = 287/336 (85%) Strand = Plus / Plus Query: 69 ggcggggtcgatccgcgtcaccatggaggtgggcgccgacggcgtcgcgctcatcaccat 128 ||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||| Sbjct: 107 ggcgggggcgatccgcgtcgccatggaggtgggcgccgacggcgtcgcggtcgtcaccat 166 Query: 129 ctgcaacccgccggtcaatgctctacaccccatcatcatccaggggctcaaggacaagta 188 |||||||||||| |||||||| || || ||||||||||||||||| | ||||| ||||| Sbjct: 167 ctgcaacccgcccgtcaatgcgctgcatcccatcatcatccagggattgaaggagaagta 226 Query: 189 cgccgaggccttccaccgcgacgacgtcagggccgtcgtgctcaccggcgcggtgggcaa 248 ||| ||||| | | ||||||||||||| |||| ||||||||||||| || | ||||| Sbjct: 227 cgcggaggcgatggatcgcgacgacgtcaaggccatcgtgctcaccggtgctggaggcaa 286 Query: 249 gttttgtggaggcttcgatataaatgtattctcaaaagttcatgacactggagatgtgtc 308 |||||||||||||| ||||| ||||| ||| || ||||||| | |||||| |||| || Sbjct: 287 attttgtggaggctttgatatcaatgtgttcacagaagttcacaagactggaaatgtatc 346 Query: 309 gcatctgccagatatgtcttttgagctcgtgtcgaatatgatggaagatggcaaaaagcc 368 | | |||| ||| | ||| ||||||| ||||||||| ||||||||| ||||||||||| Sbjct: 347 tcttatgcctgatgtatctgttgagcttgtgtcgaatttgatggaagcgggcaaaaagcc 406 Query: 369 ttctgtcgctgcaattcaaggccttgctcttggtgg 404 ||| || ||||| ||||||||||||||||||||||| Sbjct: 407 ttcagttgctgccattcaaggccttgctcttggtgg 442
>gb|AF220609.1| Oryza sativa multifunctional protein mRNA, complete cds Length = 2241 Score = 262 bits (132), Expect = 8e-67 Identities = 273/320 (85%) Strand = Plus / Plus Query: 85 gtcaccatggaggtgggcgccgacggcgtcgcgctcatcaccatctgcaacccgccggtc 144 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| Sbjct: 1 gtcaccatggaggtgggcgccgacggcgtcgcggtcgtcaccatctgcaacccgcccgtc 60 Query: 145 aatgctctacaccccatcatcatccaggggctcaaggacaagtacgccgaggccttccac 204 ||||| || || ||||||||||||||||| | ||||| |||||||| ||||| | | Sbjct: 61 aatgcgctgcatcccatcatcatccagggattgaaggagaagtacgcggaggcgatggat 120 Query: 205 cgcgacgacgtcagggccgtcgtgctcaccggcgcggtgggcaagttttgtggaggcttc 264 ||||||||||||| |||| ||||||||||||| || | ||||| |||||||||||||| Sbjct: 121 cgcgacgacgtcaaggccatcgtgctcaccggtgctggaggcaaattttgtggaggcttt 180 Query: 265 gatataaatgtattctcaaaagttcatgacactggagatgtgtcgcatctgccagatatg 324 ||||| ||||| ||| || ||||||| | |||||| |||| || | | |||| ||| | Sbjct: 181 gatatcaatgtgttcacagaagttcacaagactggaaatgtatctcttatgcctgatgta 240 Query: 325 tcttttgagctcgtgtcgaatatgatggaagatggcaaaaagccttctgtcgctgcaatt 384 ||| ||||||| ||||||||| ||||||||| |||||||||||||| || ||||| ||| Sbjct: 241 tctgttgagcttgtgtcgaatttgatggaagcgggcaaaaagccttcagttgctgccatt 300 Query: 385 caaggccttgctcttggtgg 404 |||||||||||||||||||| Sbjct: 301 caaggccttgctcttggtgg 320
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 69 ggcggggtcgatccgcgtcaccatggaggtgggcgccgacggcgtcgcgctcatcaccat 128 ||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 10000746 ggcgggggcgatccgcgtcaccatggaggtgggcgccgacggcgtcgcggtcgtcaccat 10000805 Query: 129 ctgcaacccgccggtcaatgctctacaccccatca 163 |||||||||||| |||||||| || || ||||||| Sbjct: 10000806 ctgcaacccgcccgtcaatgcgctgcatcccatca 10000840 Score = 69.9 bits (35), Expect = 6e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 358 ggcaaaaagccttctgtcgctgcaattcaaggccttgctcttggtgg 404 |||||||||||||| || ||||| ||||||||||||||||||||||| Sbjct: 10002161 ggcaaaaagccttcagttgctgccattcaaggccttgctcttggtgg 10002207 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Plus Query: 164 tcatccaggggctcaaggacaagtacgccgaggccttccaccgcgacgacgtcagggccg 223 |||||||||| | ||||| |||||||| ||||| | | ||||||||||||| |||| Sbjct: 10000952 tcatccagggattgaaggagaagtacgcggaggcgatggatcgcgacgacgtcaaggcca 10001011 Query: 224 tcgtgctcaccgg 236 ||||||||||||| Sbjct: 10001012 tcgtgctcaccgg 10001024 Score = 46.1 bits (23), Expect = 0.090 Identities = 41/47 (87%) Strand = Plus / Plus Query: 244 ggcaagttttgtggaggcttcgatataaatgtattctcaaaagttca 290 ||||| |||||||||||||| ||||| ||||| ||| || ||||||| Sbjct: 10001794 ggcaaattttgtggaggctttgatatcaatgtgttcacagaagttca 10001840
>dbj|AP004771.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0413A11 Length = 188440 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 69 ggcggggtcgatccgcgtcaccatggaggtgggcgccgacggcgtcgcgctcatcaccat 128 ||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 75439 ggcgggggcgatccgcgtcaccatggaggtgggcgccgacggcgtcgcggtcgtcaccat 75498 Query: 129 ctgcaacccgccggtcaatgctctacaccccatca 163 |||||||||||| |||||||| || || ||||||| Sbjct: 75499 ctgcaacccgcccgtcaatgcgctgcatcccatca 75533 Score = 69.9 bits (35), Expect = 6e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 358 ggcaaaaagccttctgtcgctgcaattcaaggccttgctcttggtgg 404 |||||||||||||| || ||||| ||||||||||||||||||||||| Sbjct: 76854 ggcaaaaagccttcagttgctgccattcaaggccttgctcttggtgg 76900 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Plus Query: 164 tcatccaggggctcaaggacaagtacgccgaggccttccaccgcgacgacgtcagggccg 223 |||||||||| | ||||| |||||||| ||||| | | ||||||||||||| |||| Sbjct: 75645 tcatccagggattgaaggagaagtacgcggaggcgatggatcgcgacgacgtcaaggcca 75704 Query: 224 tcgtgctcaccgg 236 ||||||||||||| Sbjct: 75705 tcgtgctcaccgg 75717 Score = 46.1 bits (23), Expect = 0.090 Identities = 41/47 (87%) Strand = Plus / Plus Query: 244 ggcaagttttgtggaggcttcgatataaatgtattctcaaaagttca 290 ||||| |||||||||||||| ||||| ||||| ||| || ||||||| Sbjct: 76487 ggcaaattttgtggaggctttgatatcaatgtgttcacagaagttca 76533
>ref|NM_184007.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2184 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 91 atggaggtgggcgccgacggcgtcgcgctcatcaccatctgcaacccgccggtcaa 146 |||||||| || || ||||||||||| |||||||||||||||||||||| ||||| Sbjct: 37 atggaggtcggagcggacggcgtcgccgtcatcaccatctgcaacccgcccgtcaa 92
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 91 atggaggtgggcgccgacggcgtcgcgctcatcaccatctgcaacccgccggtcaa 146 |||||||| || || ||||||||||| |||||||||||||||||||||| ||||| Sbjct: 13870400 atggaggtcggagcggacggcgtcgccgtcatcaccatctgcaacccgcccgtcaa 13870455
>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1051E10 Length = 207782 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 91 atggaggtgggcgccgacggcgtcgcgctcatcaccatctgcaacccgccggtcaa 146 |||||||| || || ||||||||||| |||||||||||||||||||||| ||||| Sbjct: 30702 atggaggtcggagcggacggcgtcgccgtcatcaccatctgcaacccgcccgtcaa 30757
>dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0440D10 Length = 144340 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 91 atggaggtgggcgccgacggcgtcgcgctcatcaccatctgcaacccgccggtcaa 146 |||||||| || || ||||||||||| |||||||||||||||||||||| ||||| Sbjct: 107803 atggaggtcggagcggacggcgtcgccgtcatcaccatctgcaacccgcccgtcaa 107858
>dbj|AK100444.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090D07, full insert sequence Length = 2677 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 91 atggaggtgggcgccgacggcgtcgcgctcatcaccatctgcaacccgccggtcaa 146 |||||||| || || ||||||||||| |||||||||||||||||||||| ||||| Sbjct: 253 atggaggtcggagcggacggcgtcgccgtcatcaccatctgcaacccgcccgtcaa 308
>ref|NM_185270.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2151 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Plus Query: 108 cggcgtcgcgctcatcaccatctgcaacccgccggtcaatgc 149 ||||||||| ||||||||||||| |||||| || |||||||| Sbjct: 18 cggcgtcgccctcatcaccatctccaaccctcccgtcaatgc 59
>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05, complete sequence Length = 145044 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 108 cggcgtcgcgctcatcaccatctgcaacccgccggtcaatgc 149 ||||||||| ||||||||||||| |||||| || |||||||| Sbjct: 45135 cggcgtcgccctcatcaccatctccaaccctcccgtcaatgc 45094
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 108 cggcgtcgcgctcatcaccatctgcaacccgccggtcaatgc 149 ||||||||| ||||||||||||| |||||| || |||||||| Sbjct: 3167418 cggcgtcgccctcatcaccatctccaaccctcccgtcaatgc 3167377
>dbj|AK102420.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093D14, full insert sequence Length = 2757 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Plus Query: 108 cggcgtcgcgctcatcaccatctgcaacccgccggtcaatgc 149 ||||||||| ||||||||||||| |||||| || |||||||| Sbjct: 277 cggcgtcgccctcatcaccatctccaaccctcccgtcaatgc 318
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 121 atcaccatctgcaacccgccggtcaatgc 149 |||||||||||||| |||||||||||||| Sbjct: 492424 atcaccatctgcaatccgccggtcaatgc 492452
>gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic monensin biosynthesis gene cluster, partial sequence Length = 103450 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 222 cgtcgtgctcaccggcgcggtgggca 247 ||||||||||| |||||||||||||| Sbjct: 72191 cgtcgtgctcagcggcgcggtgggca 72216
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 59 cgatggcggcggcggggtcgat 80 |||||||||||||||||||||| Sbjct: 8051252 cgatggcggcggcggggtcgat 8051231 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 ggccgtcgtgctcaccggcg 238 |||||||||||||||||||| Sbjct: 6439181 ggccgtcgtgctcaccggcg 6439162
>emb|AL732555.7| Mouse DNA sequence from clone RP23-124I19 on chromosome 4, complete sequence Length = 157653 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 350 tggaagatggcaaaaagccttc 371 |||||||||||||||||||||| Sbjct: 125801 tggaagatggcaaaaagccttc 125822
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ggcggcggcggggtcgatccg 83 ||||||||||||||||||||| Sbjct: 2474158 ggcggcggcggggtcgatccg 2474138
>gb|AC009635.5| Homo sapiens chromosome 8, clone RP11-21J9, complete sequence Length = 171903 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 282 aaaagttcatgacactggaga 302 ||||||||||||||||||||| Sbjct: 158288 aaaagttcatgacactggaga 158308
>gb|AC069133.6| Homo sapiens BAC clone RP11-579E24 from 8, complete sequence Length = 201146 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 aaaagttcatgacactggaga 302 ||||||||||||||||||||| Sbjct: 191451 aaaagttcatgacactggaga 191431
>gb|AC068863.6| Homo sapiens chromosome 2, clone CTD-2170C4, complete sequence Length = 101618 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 282 aaaagttcatgacactggaga 302 ||||||||||||||||||||| Sbjct: 30531 aaaagttcatgacactggaga 30551
>gb|AF542531.2| Cryptococcus neoformans var. neoformans strain JEC21 mating type alpha locus, complete sequence Length = 133474 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ccttccaccgcgacgacgtc 216 |||||||||||||||||||| Sbjct: 124374 ccttccaccgcgacgacgtc 124355
>ref|XM_450687.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1057 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gatggcggcggcggggtcga 79 |||||||||||||||||||| Sbjct: 921 gatggcggcggcggggtcga 902
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete sequence Length = 1783081 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 ccttccaccgcgacgacgtc 216 |||||||||||||||||||| Sbjct: 1524937 ccttccaccgcgacgacgtc 1524956
>gb|AC115968.10| Mus musculus chromosome 1, clone RP24-72P6, complete sequence Length = 229959 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 tgtattctcaaaagttcatgacac 296 |||| ||||||||||||||||||| Sbjct: 76072 tgtaatctcaaaagttcatgacac 76095
>ref|XM_749412.1| Aspergillus fumigatus Af293 DNA ligase (Afu3g11140) partial mRNA Length = 2502 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 caaggacaagtacgccgagg 196 |||||||||||||||||||| Sbjct: 2154 caaggacaagtacgccgagg 2173
>ref|XM_570128.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CND05650) partial mRNA Length = 738 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ccttccaccgcgacgacgtc 216 |||||||||||||||||||| Sbjct: 590 ccttccaccgcgacgacgtc 571
>gb|BC043776.1| Xenopus laevis 1-acylglycerol-3-phosphate O-acyltransferase 3, mRNA (cDNA clone MGC:52981 IMAGE:4930744), complete cds Length = 3509 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 tcatccaggggctcaaggac 183 |||||||||||||||||||| Sbjct: 518 tcatccaggggctcaaggac 537
>ref|XM_766440.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_630_8448_6511) partial mRNA Length = 1938 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 172 gggctcaaggacaagtacgccgag 195 ||||||||||||||| |||||||| Sbjct: 891 gggctcaaggacaaggacgccgag 868
>ref|XM_762166.1| Giardia lamblia ATCC 50803 axoneme-associated protein (GLP_227_23995_22130) partial mRNA Length = 1866 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 172 gggctcaaggacaagtacgccgag 195 ||||||||||||||| |||||||| Sbjct: 1078 gggctcaaggacaaggacgccgag 1101
>ref|XM_766439.1| Giardia lamblia ATCC 50803 axoneme-associated protein (GLP_630_3463_8346) partial mRNA Length = 4884 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 172 gggctcaaggacaagtacgccgag 195 ||||||||||||||| |||||||| Sbjct: 4096 gggctcaaggacaaggacgccgag 4119
>gb|AF400249.1| Giardia intestinalis axoneme-associated protein GASP-180 gene, complete cds Length = 5504 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 172 gggctcaaggacaagtacgccgag 195 ||||||||||||||| |||||||| Sbjct: 4584 gggctcaaggacaaggacgccgag 4607
>emb|BX664739.3| Human DNA sequence from clone WI2-89031B12 on chromosome X Contains the FAM3A gene for family with sequence similarity, the SLC10A3 3 gene for solute carrier family 10 (sodium/bile acid cotransporter family) member 3, the UBL4 gene for ubiquitin-like 4 and three CpG islands, complete sequence Length = 41279 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 acaccccatcatcatccagg 172 |||||||||||||||||||| Sbjct: 25987 acaccccatcatcatccagg 25968
>emb|X97560.1|SC32KBF S.cerevisiae 32kb DNA fragment of chromosome XII, left arm Length = 32088 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 cttttgagctcgtgtcgaat 345 |||||||||||||||||||| Sbjct: 10210 cttttgagctcgtgtcgaat 10191
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 tgctcaccggcgcggtgggc 246 |||||||||||||||||||| Sbjct: 577485 tgctcaccggcgcggtgggc 577466
>gb|AC069077.7| Homo sapiens chromosome 10 clone RP11-418N10, complete sequence Length = 160384 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 aatgtattctcaaaagttca 290 |||||||||||||||||||| Sbjct: 26255 aatgtattctcaaaagttca 26236
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gatggcggcggcggggtcga 79 |||||||||||||||||||| Sbjct: 12242059 gatggcggcggcggggtcga 12242078
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 gtgctcaccggcgcggtggg 245 |||||||||||||||||||| Sbjct: 100220 gtgctcaccggcgcggtggg 100201
>gb|AF542530.2| Cryptococcus neoformans var. neoformans strain JEC20 mating type a locus, complete sequence Length = 148067 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ccttccaccgcgacgacgtc 216 |||||||||||||||||||| Sbjct: 138967 ccttccaccgcgacgacgtc 138948
>dbj|AP005872.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1168F12 Length = 141524 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gatggcggcggcggggtcga 79 |||||||||||||||||||| Sbjct: 25613 gatggcggcggcggggtcga 25632
>dbj|AK108199.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-C10, full insert sequence Length = 1057 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gatggcggcggcggggtcga 79 |||||||||||||||||||| Sbjct: 921 gatggcggcggcggggtcga 902
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 gaggccttccaccgcgacga 212 |||||||||||||||||||| Sbjct: 2259739 gaggccttccaccgcgacga 2259720
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 208 gacgacgtcagggccgtcgtgctcaccggcgc 239 |||||||||| |||||||||||| ||||||| Sbjct: 40739 gacgacgtcaaggccgtcgtgctggccggcgc 40770
>gb|L44140.1|HUMFLNG6PD Homo sapiens chromosome X region from filamin (FLN) gene to glucose-6-phosphate dehydrogenase (G6PD) gene, complete cds's Length = 219447 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 acaccccatcatcatccagg 172 |||||||||||||||||||| Sbjct: 176253 acaccccatcatcatccagg 176234
>emb|X53731.1|SCSPA2G S. cerevisiae SPA2 gene Length = 6041 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 cttttgagctcgtgtcgaat 345 |||||||||||||||||||| Sbjct: 863 cttttgagctcgtgtcgaat 844
>emb|Z73126.1|SCYLL021W S.cerevisiae chromosome XII reading frame ORF YLL021w Length = 5354 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 cttttgagctcgtgtcgaat 345 |||||||||||||||||||| Sbjct: 874 cttttgagctcgtgtcgaat 855
>gb|DQ331856.1| Synthetic construct Saccharomyces cerevisiae clone FLH203067.01X SPA2 gene, complete sequence Length = 4401 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 cttttgagctcgtgtcgaat 345 |||||||||||||||||||| Sbjct: 129 cttttgagctcgtgtcgaat 110
>emb|X55448.1|HSG6PDGEN H.sapiens G6PD gene for glucose-6-phosphate dehydrogenase Length = 52173 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 acaccccatcatcatccagg 172 |||||||||||||||||||| Sbjct: 43195 acaccccatcatcatccagg 43214 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,514,987 Number of Sequences: 3902068 Number of extensions: 3514987 Number of successful extensions: 68737 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67971 Number of HSP's gapped (non-prelim): 760 length of query: 415 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 393 effective length of database: 17,147,199,772 effective search space: 6738849510396 effective search space used: 6738849510396 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
