>Y1163_HAEIN (Q57252) Protein HI1163|
          Length = 1027

 Score = 31.6 bits (70), Expect = 0.51
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 139 QPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDP 264
           +P G ++H  GFL +    A++ A    R A  G PL  VDP
Sbjct: 826 KPNGKAMHIKGFLKRFSKTAQNQAEFLNRMAKLGIPLVGVDP 867

>NFAC4_HUMAN (Q14934) Nuclear factor of activated T-cells, cytoplasmic 4|
           (NF-ATc4) (NFATc4) (T cell transcription factor NFAT3)
           (NF-AT3)
          Length = 902

 Score = 31.6 bits (70), Expect = 0.51
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
 Frame = +1

Query: 136 PQPGGSSLHSPGFLLQPPDLARSTAIC------FRRAAAR---GWPLAAVDPRSAGTPSW 288
           P PG SSL S  F     D A   A C         AA+R   G PL +  PR++  P W
Sbjct: 169 PSPGSSSLSSWSFFSDASDEAALYAACDEVESELNEAASRFGLGSPLPS--PRASPRP-W 225

Query: 289 SPPVPW 306
           +P  PW
Sbjct: 226 TPEDPW 231

>YDIJ_ECOLI (P77748) Hypothetical protein ydiJ|
          Length = 1018

 Score = 31.6 bits (70), Expect = 0.51
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 142 PGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDP 264
           P G + H  GFL +    A+ TA    R A  G P+  VDP
Sbjct: 826 PNGKAQHIKGFLNRFAKTAKKTADFLNRMAKLGMPMVGVDP 866

>UL52_PRVKA (Q85228) DNA helicase/primase complex protein (DNA replication|
           protein UL52)
          Length = 962

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = -2

Query: 344 RRASPAATXAADCQGTGGLQEGVPADLGSTAARGHPLAAA---RRKQMAVERARSGGWRR 174
           +  +P+    A   G G +++   A L + A RG   AAA   RR     ER    GW R
Sbjct: 363 QNVTPSVARLAPAMGAGYVEDRTYAALAADAPRGLCDAAAGLARRVTAVEERLAPHGWVR 422

Query: 173 KPGEWRLDP 147
            P E +  P
Sbjct: 423 APDEEQQQP 431

>BRO1_EMENI (Q6XPR4) Vacuolar protein-sorting protein bro1 (BRO domain-containing|
            protein 1)
          Length = 1000

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
 Frame = +1

Query: 115  SAKP*PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWP-LAAVDPRSAGTPSWS 291
            S +P P   P GSS   P     PP   ++ A     A  +  P  A   P+  GTP   
Sbjct: 791  STEPKPPSVPPGSSTAGPAKAKSPPPPVKAPAYPTNIAPPKASPHFAPTVPQQHGTPVSH 850

Query: 292  PPVPWQSAAXVAAGLA 339
             P P+       AG++
Sbjct: 851  SPAPYSQYVPPGAGVS 866

>ADRB1_FELCA (Q9TST6) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor)
          Length = 474

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +1

Query: 151 SSLHSPGFLLQPPDLARS--TAICFRRAAARGWPLAAVD-PRSAGTPSWSPPVPWQSAA 318
           +S  +P    + PD  ++    +CF R AARG   AA D PR++G    + P P   AA
Sbjct: 365 NSAFNPIIYCRSPDFRKAFQRLLCFARRAARGGHAAAGDRPRASGCLPGTRPPPSPGAA 423

>PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 443

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -2

Query: 305 QGTGGLQEG---VPADLGSTAARGHPLAAARRKQMAVERARSGG 183
           QG GG +E    V  D G+  + GHPL+ A +   A+     GG
Sbjct: 29  QGAGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGGGG 72

>Y1375_MYCTU (P71803) Hypothetical UPF0142 protein Rv1375/MT1419|
          Length = 439

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 335 SPAATXAADCQGTG--GLQEGVPADLGSTAARGHPLAAARRKQMAVERARSGGWR 177
           S A T AA  + T   G +E +P+ +     R H  A AR+  + + RAR   WR
Sbjct: 321 SRAITEAAQSRITAISGAREDLPSAIYHRFGRVHTYAKARKTSLRLNRARPTPWR 375

>PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 445

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -2

Query: 305 QGTGGLQEG---VPADLGSTAARGHPLAAARRKQMAVERARSGG 183
           QG GG +E    V  D G+  + GHPL+ A +   A+     GG
Sbjct: 29  QGAGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGGGG 72

>UBP51_HUMAN (Q70EK9) Ubiquitin carboxyl-terminal hydrolase 51 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 51)
           (Ubiquitin-specific-processing protease 51)
           (Deubiquitinating enzyme 51)
          Length = 711

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +1

Query: 121 KP*PRPQPGGSSLHSPGFLLQPPDLAR 201
           KP PRPQP   S   PG    PP  AR
Sbjct: 103 KPRPRPQPRARSRSQPGLSAPPPPPAR 129

>HLES_DROME (Q02308) Protein hairless|
          Length = 1077

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +1

Query: 136  PQPGGSSLHSPG--FLLQPPDLARSTAICFRRAAARGWPLAAVDPRSAGTPSWSPPVPWQ 309
            P PG  S   P    + Q P L RS+ + +        P       SAG+P+ +PP    
Sbjct: 821  PSPGDRSASPPERRHMQQQPHLQRSSPLHYYMYPP---PPQVNGNGSAGSPTSAPPTSNS 877

Query: 310  SAAXVAAGLA 339
            SAA VAA  A
Sbjct: 878  SAAAVAAAAA 887

>KAPR_ASPFU (Q96UX3) cAMP-dependent protein kinase regulatory subunit (PKA|
           regulatory subunit)
          Length = 413

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
 Frame = +1

Query: 148 GSSLHSPGFLLQPPDLARSTAICFRRAAARGWP------------LAAVDPRSAGTPSWS 291
           G      G  ++PP  AR TA     AA +G+P              +++P SAG+ SW+
Sbjct: 85  GQGSEGQGEHVEPPGGARPTA-----AANQGFPNNYALGRRTSVSAESLNPTSAGSDSWT 139

Query: 292 PP 297
           PP
Sbjct: 140 PP 141

>HUTI_CAUCR (P58079) Imidazolonepropionase (EC 3.5.2.7)|
           (Imidazolone-5-propionate hydrolase)
          Length = 401

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = -2

Query: 326 ATXAADCQGTGGLQEGVPADLGSTAARGHPLAAARRKQMAVERARSGGW 180
           AT A   QG G +++GV A LG   A   P AAA   + A      G W
Sbjct: 13  ATLAPGRQGLGIVEDGVVACLGGRIAYAGPAAAAPTFEAAESIDVDGRW 61

>NIFA_AZOBR (P30667) Nif-specific regulatory protein|
          Length = 625

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = -2

Query: 332 PAATXAADCQGTGGLQEGVPADLGSTAARGHPLAAARRKQMAVERARSGGWRRKP 168
           P    AA+   T  +   VP   G+ AARG P      + +A  R R  G    P
Sbjct: 487 PGGPAAANAPKTPAMPAPVPEPAGAAAARGRPARRVVPRPLAGLRRRPAGGSGPP 541

>CT055_MOUSE (Q8R184) Protein C20orf55 homolog|
          Length = 296

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
 Frame = +1

Query: 106 PFHSAKP*PRPQPGGSSLHSPGFLLQPPDLARSTAIC---FRRAAA---RGWPLAAVDPR 267
           P  ++   P P PG ++  SPG   +PP L RS +     F RAAA   R +    +DP 
Sbjct: 159 PLPASPARPYPSPGTTTTSSPG---RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPE 215

Query: 268 SA 273
            A
Sbjct: 216 EA 217

>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1) (mDIA1) (p140mDIA)
          Length = 1255

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 21/66 (31%), Positives = 25/66 (37%)
 Frame = +1

Query: 106 PFHSAKP*PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDPRSAGTPS 285
           P  +A P P P PGG+ +  P     PP L  S  +        G  L    P   G P 
Sbjct: 666 PGATAIPPPPPLPGGTGIPPP-----PPPLPGSVGVPPPPPLPGGPGLPPPPPPFPGAPG 720

Query: 286 WSPPVP 303
             PP P
Sbjct: 721 IPPPPP 726

>FOXD1_MOUSE (Q61345) Forkhead box protein D1 (Forkhead-related protein FKHL8)|
           (Forkhead-related transcription factor 4) (FREAC-4)
           (Brain factor-2) (HFH-BF-2)
          Length = 456

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 23/68 (33%), Positives = 29/68 (42%)
 Frame = +1

Query: 124 P*PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDPRSAGTPSWSPPVP 303
           P P P   G   +   + LQ P  A  +A+    AAA     AA  P S   P   PP P
Sbjct: 262 PPPPPPACGYGAYGCAYGLQLPPCAPPSALFAAAAAAAA---AAFHPHSPPPPPPPPPPP 318

Query: 304 WQSAAXVA 327
             +AA +A
Sbjct: 319 PGAAAELA 326

>QUEA_RHOS4 (Q3J252) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC|
           5.-.-.-) (Queuosine biosynthesis protein queA)
          Length = 346

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
 Frame = -2

Query: 278 VPADLGSTAARGHPLAAARRKQMAVERARSGGWRR--------KPGE 162
           +PA L  T  RG   A AR +   +E A +GGWR         KPGE
Sbjct: 62  IPARLTGTRTRGE--AEARVEVTLMEPAAAGGWRAMAKPLRKLKPGE 106

>LSB6_YEAST (P42951) Phosphatidylinositol 4-kinase LSB6 (EC 2.7.1.67)|
           (PI4-kinase) (PtdIns-4-kinase)
          Length = 607

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 224 RRKQMAVERARSGGWRRKPGEWRLDPPGW 138
           R K  A++   S  W+  P EWRL P GW
Sbjct: 406 RLKLAAIDNGLSFPWKH-PDEWRLYPYGW 433

>FMT_MYCLE (Q9CCQ0) Methionyl-tRNA formyltransferase (EC 2.1.2.9)|
          Length = 318

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +1

Query: 160 HSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDPRSAGTPSWSPPVPWQSAAXVAAGLA 339
           +SP F+ +  + A    +     A  G PL AV PR      +S    W+ AA V A +A
Sbjct: 69  NSPVFVSELSEWAPECCVVVAYGALLGSPLLAVPPRGWVNLHFSLLPAWRGAAPVQAAIA 128

>ACHB3_RAT (P12391) Neuronal acetylcholine receptor protein, beta-3 subunit|
           precursor
          Length = 464

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +1

Query: 130 PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAAR--GWPLAAVDPRSAGTPSWSPPVP 303
           P    G +S+  P   L  PD+     + F  A  R  G  +     +S+GT SW+PP  
Sbjct: 100 PEEYGGINSIKVPSESLWLPDI-----VLFENADGRFEGSLMTKAIVKSSGTVSWTPPAS 154

Query: 304 WQSAAXV 324
           ++S+  +
Sbjct: 155 YKSSCTM 161

>ACHB3_MOUSE (Q8BMN3) Neuronal acetylcholine receptor protein, beta-3 subunit|
           precursor
          Length = 464

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +1

Query: 130 PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAAR--GWPLAAVDPRSAGTPSWSPPVP 303
           P    G +S+  P   L  PD+     + F  A  R  G  +     +S+GT SW+PP  
Sbjct: 100 PEDYGGINSIKVPSESLWLPDI-----VLFENADGRFEGSLMTKAIVKSSGTVSWTPPAS 154

Query: 304 WQSAAXV 324
           ++S+  +
Sbjct: 155 YKSSCTM 161

>MY18B_HUMAN (Q8IUG5) Myosin-18B (Myosin XVIIIb)|
          Length = 2567

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 293 GLQEGVPADLGSTAARGH-PLAAARRKQMAVERARSG 186
           G ++G+PA +GS A R +  L   RR Q  V   RSG
Sbjct: 627 GRRDGLPAHIGSMAQRAYWALLNQRRDQSIVALGRSG 663

>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor|
          Length = 3695

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +1

Query: 145 GGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVD 261
           GG SLH P F L       ++A C   A ARG P    D
Sbjct: 41  GGFSLHPPYFNLAEGARIAASATCGEEAPARGSPRPTED 79

>CI021_MOUSE (Q9D1A0) UPF0308 protein C9orf21 homolog|
          Length = 226

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -2

Query: 338 ASPAATXAADCQGTGGLQEGVPADLGSTAARGHPLAAA 225
           A+P     + C G       VP+  GS   RG PLAAA
Sbjct: 2   AAPVTRQVSGCAGR------VPSPAGSVTERGQPLAAA 33

>PACC_NEUCR (Q7RVQ8) pH-response transcription factor pacC/RIM101|
          Length = 621

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 160 HSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDPRSAGTPSWSP 294
           HSP +  +P       +I     A+   PL+A  P SAGTP+ +P
Sbjct: 393 HSPTYATRP-------SIDPYHGASLASPLSATSPHSAGTPAVTP 430

>H1_LYCES (P37218) Histone H1|
          Length = 287

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 22/78 (28%), Positives = 33/78 (42%)
 Frame = +1

Query: 106 PFHSAKP*PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDPRSAGTPS 285
           P   AKP  + +P   +   P    +P   A+  A    +AAA   P AAV P++A   +
Sbjct: 166 PAAKAKPAAKAKPAAKA--KPAAKAKPAAKAKPVAKAKPKAAAAAKPKAAVKPKAAPAKT 223

Query: 286 WSPPVPWQSAAXVAAGLA 339
            +   P   A    A +A
Sbjct: 224 KAAVKPNLKAKTTTAKVA 241

>BTBD7_MOUSE (Q8CFE5) BTB/POZ domain-containing protein 7|
          Length = 1130

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 136 PQPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAA 255
           P+PG   ++ PG  + PPD   +T +  +  AA     AA
Sbjct: 808 PKPGPPPVYLPGVKVAPPDCTNTTGLGRQTVAAAAAAAAA 847


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,560,578
Number of Sequences: 219361
Number of extensions: 556983
Number of successful extensions: 2225
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2221
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)