ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl26a01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK100383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085G23, full insert sequence Length = 3262 Score = 333 bits (168), Expect = 2e-88 Identities = 201/212 (94%) Strand = Plus / Plus Query: 126 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185 |||||||||||||| |||||||||| ||||||||||||||||||||||| || |||||| Sbjct: 158 gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 217 Query: 186 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaaggcggcggcgtgta 245 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct: 218 ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaaggcggcggcgtgta 277 Query: 246 tggaggtcggcgtgggctccttcagcgacccggaggggctcgagggcctcgcgcacttcc 305 ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct: 278 tggaggttggcgtgggctcgttcagcgacccggaggggctcgagggcctcgcccacttcc 337 Query: 306 tcgagcatatgctgttttatgccagtgagaaa 337 ||||||||||||| |||||||||||||||||| Sbjct: 338 tcgagcatatgctattttatgccagtgagaaa 369
>ref|XM_463457.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2841 Score = 176 bits (89), Expect = 3e-41 Identities = 101/105 (96%) Strand = Plus / Plus Query: 233 gcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagggc 292 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct: 202 gcggcggcgtgtatggaggttggcgtgggctcgttcagcgacccggaggggctcgagggc 261 Query: 293 ctcgcgcacttcctcgagcatatgctgttttatgccagtgagaaa 337 ||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 262 ctcgcccacttcctcgagcatatgctattttatgccagtgagaaa 306 Score = 159 bits (80), Expect = 7e-36 Identities = 101/108 (93%) Strand = Plus / Plus Query: 126 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185 |||||||||||||| |||||||||| ||||||||||||||||||||||| || |||||| Sbjct: 35 gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 94 Query: 186 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 233 |||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct: 95 ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaagg 142
>ref|XM_478770.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3199 Score = 168 bits (85), Expect = 7e-39 Identities = 163/189 (86%) Strand = Plus / Plus Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208 |||| ||||||||| | |||||||||| | |||||||||||| ||||||||||||||| Sbjct: 244 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 303 Query: 209 atcagcgacgccgacaccgacaaggcggcggcgtgtatggaggtcggcgtgggctccttc 268 |||||||| |||||||||||||||||||||||| ||| | ||| ||||||| |||| Sbjct: 304 gtcagcgaccccgacaccgacaaggcggcggcgtcgatgaacgtctcggtgggctacttc 363 Query: 269 agcgacccggaggggctcgagggcctcgcgcacttcctcgagcatatgctgttttatgcc 328 |||| || |||||||||||||| |||||||||||||| ||||||||||| || ||||| Sbjct: 364 tgcgatcccgaggggctcgaggggctcgcgcacttccttgagcatatgcttttctatgct 423 Query: 329 agtgagaaa 337 ||||||||| Sbjct: 424 agtgagaaa 432
>dbj|AK100076.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001F09, full insert sequence Length = 3200 Score = 168 bits (85), Expect = 7e-39 Identities = 163/189 (86%) Strand = Plus / Plus Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208 |||| ||||||||| | |||||||||| | |||||||||||| ||||||||||||||| Sbjct: 244 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 303 Query: 209 atcagcgacgccgacaccgacaaggcggcggcgtgtatggaggtcggcgtgggctccttc 268 |||||||| |||||||||||||||||||||||| ||| | ||| ||||||| |||| Sbjct: 304 gtcagcgaccccgacaccgacaaggcggcggcgtcgatgaacgtctcggtgggctacttc 363 Query: 269 agcgacccggaggggctcgagggcctcgcgcacttcctcgagcatatgctgttttatgcc 328 |||| || |||||||||||||| |||||||||||||| ||||||||||| || ||||| Sbjct: 364 tgcgatcccgaggggctcgaggggctcgcgcacttccttgagcatatgcttttctatgct 423 Query: 329 agtgagaaa 337 ||||||||| Sbjct: 424 agtgagaaa 432
>ref|XM_463460.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2838 Score = 161 bits (81), Expect = 2e-36 Identities = 99/105 (94%) Strand = Plus / Plus Query: 233 gcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagggc 292 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 190 gcggcggcgtgtatggaggtcggcgtgggctcgttcagcgacccggaggggctcgagggc 249 Query: 293 ctcgcgcacttcctcgagcatatgctgttttatgccagtgagaaa 337 ||||| ||||| ||||| || ||||| |||||||||||||||||| Sbjct: 250 ctcgcccactttctcgaacacatgctattttatgccagtgagaaa 294 Score = 157 bits (79), Expect = 3e-35 Identities = 100/107 (93%) Strand = Plus / Plus Query: 126 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185 |||||||||||||| ||||| |||||||||||||||||||||||||||| || |||||| Sbjct: 23 gcaatgtggagttcatccgctcgcgcagcgacaagcgggagtaccgccgggtggtgctcc 82 Query: 186 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaag 232 |||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct: 83 ccaatgcgctcgagtgcctcctcatcagcgactccgacaccgacaag 129
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 159 bits (80), Expect = 7e-36 Identities = 101/108 (93%) Strand = Plus / Plus Query: 126 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185 |||||||||||||| ||||| |||||||||||||||||||||||||||| || |||||| Sbjct: 32978328 gcaatgtggagttcatccgctcgcgcagcgacaagcgggagtaccgccgggtggtgctcc 32978387 Query: 186 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 233 |||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 32978388 ccaatgcgctcgagtgcctcctcatcagcgactccgacaccgacaagg 32978435 Score = 159 bits (80), Expect = 7e-36 Identities = 101/108 (93%) Strand = Plus / Plus Query: 126 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185 |||||||||||||| |||||||||| ||||||||||||||||||||||| || |||||| Sbjct: 32958783 gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 32958842 Query: 186 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 233 |||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct: 32958843 ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaagg 32958890 Score = 131 bits (66), Expect = 2e-27 Identities = 75/78 (96%) Strand = Plus / Plus Query: 231 aggcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagg 290 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 32978568 aggcggcggcgtgtatggaggtcggcgtgggctcgttcagcgacccggaggggctcgagg 32978627 Query: 291 gcctcgcgcacttcctcg 308 ||||||| ||||| |||| Sbjct: 32978628 gcctcgcccactttctcg 32978645 Score = 131 bits (66), Expect = 2e-27 Identities = 75/78 (96%) Strand = Plus / Plus Query: 231 aggcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagg 290 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 32959022 aggcggcggcgtgtatggaggttggcgtgggctcgttcagcgacccggaggggctcgagg 32959081 Query: 291 gcctcgcgcacttcctcg 308 ||||||| |||||||||| Sbjct: 32959082 gcctcgcccacttcctcg 32959099 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 308 gagcatatgctgttttatgccagtgagaaa 337 ||||||||||| |||||||||||||||||| Sbjct: 32960652 gagcatatgctattttatgccagtgagaaa 32960681 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 atgctgttttatgccagtgagaaa 337 ||||| |||||||||||||||||| Sbjct: 32979329 atgctattttatgccagtgagaaa 32979352
>dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0010B10 Length = 155263 Score = 159 bits (80), Expect = 7e-36 Identities = 101/108 (93%) Strand = Plus / Plus Query: 126 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185 |||||||||||||| ||||| |||||||||||||||||||||||||||| || |||||| Sbjct: 44556 gcaatgtggagttcatccgctcgcgcagcgacaagcgggagtaccgccgggtggtgctcc 44615 Query: 186 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 233 |||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 44616 ccaatgcgctcgagtgcctcctcatcagcgactccgacaccgacaagg 44663 Score = 159 bits (80), Expect = 7e-36 Identities = 101/108 (93%) Strand = Plus / Plus Query: 126 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185 |||||||||||||| |||||||||| ||||||||||||||||||||||| || |||||| Sbjct: 25011 gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 25070 Query: 186 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 233 |||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct: 25071 ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaagg 25118 Score = 131 bits (66), Expect = 2e-27 Identities = 75/78 (96%) Strand = Plus / Plus Query: 231 aggcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagg 290 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 44796 aggcggcggcgtgtatggaggtcggcgtgggctcgttcagcgacccggaggggctcgagg 44855 Query: 291 gcctcgcgcacttcctcg 308 ||||||| ||||| |||| Sbjct: 44856 gcctcgcccactttctcg 44873 Score = 131 bits (66), Expect = 2e-27 Identities = 75/78 (96%) Strand = Plus / Plus Query: 231 aggcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagg 290 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 25250 aggcggcggcgtgtatggaggttggcgtgggctcgttcagcgacccggaggggctcgagg 25309 Query: 291 gcctcgcgcacttcctcg 308 ||||||| |||||||||| Sbjct: 25310 gcctcgcccacttcctcg 25327 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 308 gagcatatgctgttttatgccagtgagaaa 337 ||||||||||| |||||||||||||||||| Sbjct: 26880 gagcatatgctattttatgccagtgagaaa 26909 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 atgctgttttatgccagtgagaaa 337 ||||| |||||||||||||||||| Sbjct: 45557 atgctattttatgccagtgagaaa 45580
>ref|XM_478769.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2997 Score = 121 bits (61), Expect = 2e-24 Identities = 157/189 (83%) Strand = Plus / Plus Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208 |||| ||||||||| | |||||||||| | ||||||||||||| ||||||||||||||| Sbjct: 130 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcctc 189 Query: 209 atcagcgacgccgacaccgacaaggcggcggcgtgtatggaggtcggcgtgggctccttc 268 |||||||| |||||||||||||||||||||||| ||| | ||| ||||||| |||| Sbjct: 190 gtcagcgaccccgacaccgacaaggcggcggcgtcgatgaatgtctcggtgggctacttc 249 Query: 269 agcgacccggaggggctcgagggcctcgcgcacttcctcgagcatatgctgttttatgcc 328 |||| || ||| ||||| ||||| || || ||||| ||||||||||| || ||||| Sbjct: 250 tgcgatcccgagaggctccctggccttgcacatttccttgagcatatgcttttctatgct 309 Query: 329 agtgagaaa 337 || |||||| Sbjct: 310 agcgagaaa 318
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 97.6 bits (49), Expect = 2e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208 |||| ||||||||| | |||||||||| | ||||||||||||| ||||||||||||||| Sbjct: 22901086 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcctc 22901027 Query: 209 atcagcgacgccgacaccgacaagg 233 |||||||| ||||||||||||||| Sbjct: 22901026 gtcagcgaccccgacaccgacaagg 22901002 Score = 89.7 bits (45), Expect = 5e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208 |||| ||||||||| | |||||||||| | ||||||||||||| |||||||||||| || Sbjct: 22937406 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcgtc 22937347 Query: 209 atcagcgacgccgacaccgacaagg 233 ||||||||| |||||||||| |||| Sbjct: 22937346 atcagcgaccccgacaccgataagg 22937322 Score = 89.7 bits (45), Expect = 5e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208 |||| ||||||||| | |||||||||| | |||||||||||| ||||||||||||||| Sbjct: 22918850 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 22918791 Query: 209 atcagcgacgccgacaccgacaagg 233 |||||||| ||||||||||||||| Sbjct: 22918790 gtcagcgaccccgacaccgacaagg 22918766 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 257 gtgggctccttcagcgacccggaggggctcgagggcctcgcgcacttcct 306 ||||||| |||| |||| || |||||||||||||| |||||||||||||| Sbjct: 22918623 gtgggctacttctgcgatcccgaggggctcgaggggctcgcgcacttcct 22918574
>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1019_E02 Length = 121607 Score = 97.6 bits (49), Expect = 2e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208 |||| ||||||||| | |||||||||| | ||||||||||||| ||||||||||||||| Sbjct: 94353 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcctc 94294 Query: 209 atcagcgacgccgacaccgacaagg 233 |||||||| ||||||||||||||| Sbjct: 94293 gtcagcgaccccgacaccgacaagg 94269 Score = 89.7 bits (45), Expect = 5e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208 |||| ||||||||| | |||||||||| | |||||||||||| ||||||||||||||| Sbjct: 112117 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 112058 Query: 209 atcagcgacgccgacaccgacaagg 233 |||||||| ||||||||||||||| Sbjct: 112057 gtcagcgaccccgacaccgacaagg 112033 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 257 gtgggctccttcagcgacccggaggggctcgagggcctcgcgcacttcct 306 ||||||| |||| |||| || |||||||||||||| |||||||||||||| Sbjct: 111890 gtgggctacttctgcgatcccgaggggctcgaggggctcgcgcacttcct 111841
>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1121_A05 Length = 172668 Score = 89.7 bits (45), Expect = 5e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208 |||| ||||||||| | |||||||||| | ||||||||||||| |||||||||||| || Sbjct: 12620 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcgtc 12561 Query: 209 atcagcgacgccgacaccgacaagg 233 ||||||||| |||||||||| |||| Sbjct: 12560 atcagcgaccccgacaccgataagg 12536
>gb|AY022725.1| Oryza sativa microsatellite MRG5050 containing (CCG)X10, closest to marker R2561, genomic sequence Length = 230 Score = 73.8 bits (37), Expect = 3e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208 |||| ||||||||| | |||||||||| | |||||||||||| ||||||||||||||| Sbjct: 77 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 18 Query: 209 atcagcgacgccgacac 225 |||||||| ||||||| Sbjct: 17 gtcagcgaccccgacac 1
>gb|AY035059.1| Arabidopsis thaliana At3g57470 mRNA sequence Length = 3270 Score = 48.1 bits (24), Expect = 0.018 Identities = 30/32 (93%) Strand = Plus / Plus Query: 302 ttcctcgagcatatgctgttttatgccagtga 333 ||||| |||||||||||||||||||| ||||| Sbjct: 341 ttccttgagcatatgctgttttatgcaagtga 372
>ref|NM_129743.2| Arabidopsis thaliana metalloendopeptidase AT2G41790 mRNA, complete cds Length = 3072 Score = 46.1 bits (23), Expect = 0.072 Identities = 32/35 (91%) Strand = Plus / Plus Query: 302 ttcctcgagcatatgctgttttatgccagtgagaa 336 ||||| ||||||||||| |||||||| |||||||| Sbjct: 208 ttccttgagcatatgctattttatgcaagtgagaa 242
>emb|AL133248.1|ATT8H10 Arabidopsis thaliana DNA chromosome 3, BAC clone T8H10 Length = 87503 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 308 gagcatatgctgttttatgccagtga 333 |||||||||||||||||||| ||||| Sbjct: 29242 gagcatatgctgttttatgcaagtga 29217
>emb|AJ308542.2|LES308542 Lycopersicon esculentum mRNA for insulin degrading enzyme (ide gene) Length = 3305 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 311 catatgctgttttatgccagtgagaa 336 ||||||||||||||||| |||||||| Sbjct: 257 catatgctgttttatgcaagtgagaa 282
>ref|NM_115607.2| Arabidopsis thaliana metalloendopeptidase AT3G57470 mRNA, complete cds Length = 3179 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 309 agcatatgctgttttatgccagtga 333 ||||||||||||||||||| ||||| Sbjct: 354 agcatatgctgttttatgcaagtga 378
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 297 cgcacttcctcgagcatatgctgtt 321 ||||||||||||||||| ||||||| Sbjct: 1681886 cgcacttcctcgagcatctgctgtt 1681862
>gb|AC002339.3| Arabidopsis thaliana chromosome 2 clone T11A7 map CIC11C08, complete sequence Length = 91071 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 308 gagcatatgctgttttatgccagtgagaa 336 ||||||||||| |||||||| |||||||| Sbjct: 44867 gagcatatgctattttatgcaagtgagaa 44895
>emb|BX823565.1|CNS0A4WF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS51ZC05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 3174 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 309 agcatatgctgttttatgccagtga 333 ||||||||||||||||||| ||||| Sbjct: 357 agcatatgctgttttatgcaagtga 381
>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence Length = 1212674 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 ggcctcgcgcacttcctcga 309 |||||||||||||||||||| Sbjct: 1145676 ggcctcgcgcacttcctcga 1145657
>ref|XM_842838.1| Leishmania major strain Friedlin helicase (LMJ_0909) partial mRNA Length = 2862 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 ggcctcgcgcacttcctcga 309 |||||||||||||||||||| Sbjct: 2349 ggcctcgcgcacttcctcga 2330
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 ctcgcgcacttcctcgagca 312 |||||||||||||||||||| Sbjct: 8220558 ctcgcgcacttcctcgagca 8220577
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gagtaccgccgcctgctgct 183 |||||||||||||||||||| Sbjct: 3721129 gagtaccgccgcctgctgct 3721148
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gagtaccgccgcctgctgct 183 |||||||||||||||||||| Sbjct: 1356741 gagtaccgccgcctgctgct 1356760
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 4.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 287 gagggcctcgcgcacttcctcgagcatatgctgttt 322 ||||| || ||||||||||| ||||| ||||||||| Sbjct: 5141980 gagggactggcgcacttcctggagcacatgctgttt 5142015 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,661,315 Number of Sequences: 3902068 Number of extensions: 1661315 Number of successful extensions: 31963 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31651 Number of HSP's gapped (non-prelim): 309 length of query: 337 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 315 effective length of database: 17,147,199,772 effective search space: 5401367928180 effective search space used: 5401367928180 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
