ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl25h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 76 1e-11
2emb|CR354383.8| Zebrafish DNA sequence from clone CH211-123O7 in... 38 3.2
3emb|CR354613.7| Zebrafish DNA sequence from clone CH211-112G7 in... 38 3.2

>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score = 75.8 bits (38), Expect = 1e-11
 Identities = 72/78 (92%), Gaps = 4/78 (5%)
 Strand = Plus / Plus

                                                                      
Query: 1  acacagcagcaccacagcgagctaacttagcaagcgtgccacactccccagagatcgagc 60
          |||||||| |||| |||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 4  acacagca-caccgcagcgagctaacttag-aagcgtgccacact-cccagagatcgagc 60

                            
Query: 61 gaagatgtttggcgtcgg 78
           |||||| ||||||||||
Sbjct: 61 -aagatgcttggcgtcgg 77



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>emb|CR354383.8| Zebrafish DNA sequence from clone CH211-123O7 in linkage group 21,
             complete sequence
          Length = 168569

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     acacagcagcaccacagcg 19
             |||||||||||||||||||
Sbjct: 55970 acacagcagcaccacagcg 55952



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>emb|CR354613.7| Zebrafish DNA sequence from clone CH211-112G7 in linkage group 21,
             complete sequence
          Length = 179432

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     acacagcagcaccacagcg 19
             |||||||||||||||||||
Sbjct: 95885 acacagcagcaccacagcg 95867


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 435,449
Number of Sequences: 3902068
Number of extensions: 435449
Number of successful extensions: 25850
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25845
Number of HSP's gapped (non-prelim): 4
length of query: 78
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 57
effective length of database: 17,151,101,840
effective search space: 977612804880
effective search space used: 977612804880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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