ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl25h10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 109 4e-21
2dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic D... 109 4e-21
3gb|AC024202.1| Caenorhabditis elegans cosmid Y71H2B, complete se... 42 0.81
4gb|AC116119.12| Mus musculus chromosome 12, clone RP23-76D19, co... 42 0.81
5gb|AC024861.1|AC024861 Caenorhabditis elegans clone Y71H2B, comp... 42 0.81
6gb|AC147985.3| Mus musculus BAC clone RP24-402C11 from chromosom... 40 3.2
7ref|XM_601032.2| PREDICTED: Bos taurus similar to MORC family CW... 40 3.2
8gb|AE017244.1| Mycoplasma hyopneumoniae 7448, complete genome 40 3.2
9gb|AE017243.1| Mycoplasma hyopneumoniae J, complete genome 40 3.2
10emb|BX276104.14| Mouse DNA sequence from clone RP24-313E3 on chr... 40 3.2
11gb|AC106730.2| Homo sapiens chromosome 16 clone CTD-2014E2, comp... 40 3.2
12gb|AC039057.8|AC039057 Homo sapiens chromosome 15 clone RP11-81G... 40 3.2
13gb|AC016987.4|AC016987 Homo sapiens chromosome 15, clone RP11-13... 40 3.2
14gb|AC092458.5| Homo sapiens BAC clone RP13-612N21 from 4, comple... 40 3.2
15gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome 40 3.2
16emb|AL645853.12| Mouse DNA sequence from clone RP23-329L1 on chr... 40 3.2 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  109 bits (55), Expect = 4e-21
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                            
Query: 66       aggatgtcgttggatgataaccatgagtctgtagttttggcttgcgctaaagttattaat 125
                |||||||| ||||||||||||||||| |||||||||||| |||| ||||||||||| |||
Sbjct: 21949634 aggatgtcattggatgataaccatgattctgtagttttgacttgtgctaaagttatcaat 21949575

                                           
Query: 126      gttatgttgagctatgacatgaatgag 152
                | |||| |||||||||| |||||||||
Sbjct: 21949574 gctatgctgagctatgaaatgaatgag 21949548



 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 195      gatatctgcacagctcctgtttttcgtagcaaacctgat 233
                |||||||| |||||||||||||| |||||||||||||||
Sbjct: 21949427 gatatctgtacagctcctgttttccgtagcaaacctgat 21949389



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                            
Query: 4        atgattggcaagcagtttgggcctatgcccttggccccgaaccagagttggttctttctc 63
                |||| |||||||| |||||||| |||||| | || || ||||| ||||||||||| ||||
Sbjct: 21951393 atgactggcaagcggtttgggcatatgccatcggacctgaacctgagttggttctctctc 21951334

                     
Query: 64       taagg 68
                |||||
Sbjct: 21951333 taagg 21951329
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>dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0006A22
          Length = 190690

 Score =  109 bits (55), Expect = 4e-21
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                          
Query: 66     aggatgtcgttggatgataaccatgagtctgtagttttggcttgcgctaaagttattaat 125
              |||||||| ||||||||||||||||| |||||||||||| |||| ||||||||||| |||
Sbjct: 172119 aggatgtcattggatgataaccatgattctgtagttttgacttgtgctaaagttatcaat 172060

                                         
Query: 126    gttatgttgagctatgacatgaatgag 152
              | |||| |||||||||| |||||||||
Sbjct: 172059 gctatgctgagctatgaaatgaatgag 172033



 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                     
Query: 195    gatatctgcacagctcctgtttttcgtagcaaacctgat 233
              |||||||| |||||||||||||| |||||||||||||||
Sbjct: 171912 gatatctgtacagctcctgttttccgtagcaaacctgat 171874



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                          
Query: 4      atgattggcaagcagtttgggcctatgcccttggccccgaaccagagttggttctttctc 63
              |||| |||||||| |||||||| |||||| | || || ||||| ||||||||||| ||||
Sbjct: 173878 atgactggcaagcggtttgggcatatgccatcggacctgaacctgagttggttctctctc 173819

                   
Query: 64     taagg 68
              |||||
Sbjct: 173818 taagg 173814
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>gb|AC024202.1| Caenorhabditis elegans cosmid Y71H2B, complete sequence
          Length = 58518

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 158   ttttgatttttcagagaaattgata 182
             |||||||||||||||||||| ||||
Sbjct: 13260 ttttgatttttcagagaaatcgata 13236
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>gb|AC116119.12| Mus musculus chromosome 12, clone RP23-76D19, complete sequence
          Length = 264410

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 169   cagagaaattgataaatcaga 189
             |||||||||||||||||||||
Sbjct: 74409 cagagaaattgataaatcaga 74389
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>gb|AC024861.1|AC024861 Caenorhabditis elegans clone Y71H2B, complete sequence
          Length = 58518

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 158   ttttgatttttcagagaaattgata 182
             |||||||||||||||||||| ||||
Sbjct: 13260 ttttgatttttcagagaaatcgata 13236
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>gb|AC147985.3| Mus musculus BAC clone RP24-402C11 from chromosome 19, complete sequence
          Length = 170479

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    tcatattttgatttttcaga 172
              ||||||||||||||||||||
Sbjct: 113070 tcatattttgatttttcaga 113089
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>ref|XM_601032.2| PREDICTED: Bos taurus similar to MORC family CW-type zinc finger 1
           (LOC522745), mRNA
          Length = 807

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 200 ctgcacagctcctgtttttc 219
           ||||||||||||||||||||
Sbjct: 179 ctgcacagctcctgtttttc 160
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>gb|AE017244.1| Mycoplasma hyopneumoniae 7448, complete genome
          Length = 920079

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 158    ttttgatttttcagagaaattgataaat 185
              |||||||||||| |||||||| ||||||
Sbjct: 293710 ttttgatttttccgagaaattaataaat 293737
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>gb|AE017243.1| Mycoplasma hyopneumoniae J, complete genome
          Length = 897405

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 158    ttttgatttttcagagaaattgataaat 185
              |||||||||||| |||||||| ||||||
Sbjct: 280221 ttttgatttttccgagaaattaataaat 280248
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>emb|BX276104.14| Mouse DNA sequence from clone RP24-313E3 on chromosome 4, complete
             sequence
          Length = 152376

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   ctgatgtggatggaggtttt 248
             ||||||||||||||||||||
Sbjct: 40918 ctgatgtggatggaggtttt 40937
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>gb|AC106730.2| Homo sapiens chromosome 16 clone CTD-2014E2, complete sequence
          Length = 152748

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   atattttgatttttcagaga 174
             ||||||||||||||||||||
Sbjct: 15094 atattttgatttttcagaga 15113
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>gb|AC039057.8|AC039057 Homo sapiens chromosome 15 clone RP11-81G24 map 15q21.3, complete
             sequence
          Length = 174672

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   tttttcagagaaattgataa 183
             ||||||||||||||||||||
Sbjct: 91126 tttttcagagaaattgataa 91107
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>gb|AC016987.4|AC016987 Homo sapiens chromosome 15, clone RP11-133L19, complete sequence
          Length = 176639

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   catattttgatttttcagag 173
             ||||||||||||||||||||
Sbjct: 22984 catattttgatttttcagag 23003
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>gb|AC092458.5| Homo sapiens BAC clone RP13-612N21 from 4, complete sequence
          Length = 126619

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 165    ttttcagagaaattgataaa 184
              ||||||||||||||||||||
Sbjct: 114227 ttttcagagaaattgataaa 114246
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>gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome
          Length = 892758

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 158    ttttgatttttcagagaaattgataaat 185
              |||||||||||| |||||||| ||||||
Sbjct: 161664 ttttgatttttccgagaaattaataaat 161637
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>emb|AL645853.12| Mouse DNA sequence from clone RP23-329L1 on chromosome 11, complete
             sequence
          Length = 94538

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   caaacctgatgtggatggag 243
             ||||||||||||||||||||
Sbjct: 27602 caaacctgatgtggatggag 27583


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,640,037
Number of Sequences: 3902068
Number of extensions: 2640037
Number of successful extensions: 56697
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56619
Number of HSP's gapped (non-prelim): 78
length of query: 249
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 227
effective length of database: 17,147,199,772
effective search space: 3892414348244
effective search space used: 3892414348244
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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