Clone Name | bastl25h09 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK111686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170K17, full insert sequence Length = 4534 Score = 373 bits (188), Expect = e-100 Identities = 242/260 (93%) Strand = Plus / Plus Query: 169 atgctccgcctcagggcgttccggccaacgagcgacaaggtggtgaagatccagctccac 228 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 157 atgctccgcctcagggcgttccggccgacgagcgacaaggtggtgaagatccagctccac 216 Query: 229 cccactcacccctggctcgtcaccgccgacgccaatgaccgcgtctcggtctgggactgg 288 ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 217 cccacgcacccctggctcgtcaccgccgacgccaacgaccgcgtctccgtctgggactgg 276 Query: 289 gagcaccgccaggtgatctatgagctgagggcgggtggcgtcgatgaacggaggctggtt 348 |||||||||||||||||||| ||||||| |||||||||||| || || ||| || ||||| Sbjct: 277 gagcaccgccaggtgatctacgagctgaaggcgggtggcgtggacgagcggcggttggtt 336 Query: 349 ggtgtgaagcttgagaagctcgccgagggagaaactgattcgaaaggaaagcccactgag 408 || || |||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 337 ggagttaagcttgagaagctcgccgagggagacactgattcaaaaggaaagcccactgaa 396 Query: 409 gcaatccgaggcggaagtgt 428 || |||||||| |||||||| Sbjct: 397 gccatccgaggtggaagtgt 416
>dbj|AK111531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022M05, full insert sequence Length = 2417 Score = 373 bits (188), Expect = e-100 Identities = 242/260 (93%) Strand = Plus / Plus Query: 169 atgctccgcctcagggcgttccggccaacgagcgacaaggtggtgaagatccagctccac 228 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 158 atgctccgcctcagggcgttccggccgacgagcgacaaggtggtgaagatccagctccac 217 Query: 229 cccactcacccctggctcgtcaccgccgacgccaatgaccgcgtctcggtctgggactgg 288 ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 218 cccacgcacccctggctcgtcaccgccgacgccaacgaccgcgtctccgtctgggactgg 277 Query: 289 gagcaccgccaggtgatctatgagctgagggcgggtggcgtcgatgaacggaggctggtt 348 |||||||||||||||||||| ||||||| |||||||||||| || || ||| || ||||| Sbjct: 278 gagcaccgccaggtgatctacgagctgaaggcgggtggcgtggacgagcggcggttggtt 337 Query: 349 ggtgtgaagcttgagaagctcgccgagggagaaactgattcgaaaggaaagcccactgag 408 || || |||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 338 ggagttaagcttgagaagctcgccgagggagacactgattcaaaaggaaagcccactgaa 397 Query: 409 gcaatccgaggcggaagtgt 428 || |||||||| |||||||| Sbjct: 398 gccatccgaggtggaagtgt 417
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 234 bits (118), Expect = 2e-58 Identities = 130/134 (97%) Strand = Plus / Minus Query: 169 atgctccgcctcagggcgttccggccaacgagcgacaaggtggtgaagatccagctccac 228 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 26459055 atgctccgcctcagggcgttccggccgacgagcgacaaggtggtgaagatccagctccac 26458996 Query: 229 cccactcacccctggctcgtcaccgccgacgccaatgaccgcgtctcggtctgggactgg 288 ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 26458995 cccacgcacccctggctcgtcaccgccgacgccaacgaccgcgtctccgtctgggactgg 26458936 Query: 289 gagcaccgccaggt 302 |||||||||||||| Sbjct: 26458935 gagcaccgccaggt 26458922 Score = 93.7 bits (47), Expect = 4e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 299 aggtgatctatgagctgagggcgggtggcgtcgatgaacggaggctggttggtgtgaagc 358 |||||||||| ||||||| |||||||||||| || || ||| || ||||||| || |||| Sbjct: 26458771 aggtgatctacgagctgaaggcgggtggcgtggacgagcggcggttggttggagttaagc 26458712 Query: 359 ttgagaagctcgccgagggagaaactg 385 |||||||||||||||||||||| |||| Sbjct: 26458711 ttgagaagctcgccgagggagacactg 26458685 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Minus Query: 385 gattcgaaaggaaagcccactgaggcaatccgaggcggaag 425 ||||| ||||||||||||||||| || |||||||| ||||| Sbjct: 26457764 gattcaaaaggaaagcccactgaagccatccgaggtggaag 26457724
>dbj|AP003709.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0006H05 Length = 154821 Score = 234 bits (118), Expect = 2e-58 Identities = 130/134 (97%) Strand = Plus / Minus Query: 169 atgctccgcctcagggcgttccggccaacgagcgacaaggtggtgaagatccagctccac 228 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 67674 atgctccgcctcagggcgttccggccgacgagcgacaaggtggtgaagatccagctccac 67615 Query: 229 cccactcacccctggctcgtcaccgccgacgccaatgaccgcgtctcggtctgggactgg 288 ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 67614 cccacgcacccctggctcgtcaccgccgacgccaacgaccgcgtctccgtctgggactgg 67555 Query: 289 gagcaccgccaggt 302 |||||||||||||| Sbjct: 67554 gagcaccgccaggt 67541 Score = 93.7 bits (47), Expect = 4e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 299 aggtgatctatgagctgagggcgggtggcgtcgatgaacggaggctggttggtgtgaagc 358 |||||||||| ||||||| |||||||||||| || || ||| || ||||||| || |||| Sbjct: 67390 aggtgatctacgagctgaaggcgggtggcgtggacgagcggcggttggttggagttaagc 67331 Query: 359 ttgagaagctcgccgagggagaaactg 385 |||||||||||||||||||||| |||| Sbjct: 67330 ttgagaagctcgccgagggagacactg 67304 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Minus Query: 385 gattcgaaaggaaagcccactgaggcaatccgaggcggaag 425 ||||| ||||||||||||||||| || |||||||| ||||| Sbjct: 66383 gattcaaaaggaaagcccactgaagccatccgaggtggaag 66343
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 113 bits (57), Expect = 5e-22 Identities = 84/93 (90%) Strand = Plus / Minus Query: 176 gcctcagggcgttccggccaacgagcgacaaggtggtgaagatccagctccaccccactc 235 ||||||||||||| ||||| || || |||||||||||||||||||| |||||||||| | Sbjct: 23238161 gcctcagggcgtttcggcctaccagagacaaggtggtgaagatccaattccaccccacgc 23238102 Query: 236 acccctggctcgtcaccgccgacgccaatgacc 268 |||||||||||||| ||||| |||||||||||| Sbjct: 23238101 acccctggctcgtcgccgccaacgccaatgacc 23238069 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 tggctcgtcaccgccgacgcc 261 ||||||||||||||||||||| Sbjct: 29376543 tggctcgtcaccgccgacgcc 29376523
>dbj|AP003623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0642B07 Length = 139297 Score = 113 bits (57), Expect = 5e-22 Identities = 84/93 (90%) Strand = Plus / Minus Query: 176 gcctcagggcgttccggccaacgagcgacaaggtggtgaagatccagctccaccccactc 235 ||||||||||||| ||||| || || |||||||||||||||||||| |||||||||| | Sbjct: 72923 gcctcagggcgtttcggcctaccagagacaaggtggtgaagatccaattccaccccacgc 72864 Query: 236 acccctggctcgtcaccgccgacgccaatgacc 268 |||||||||||||| ||||| |||||||||||| Sbjct: 72863 acccctggctcgtcgccgccaacgccaatgacc 72831
>gb|AC036108.19| Homo sapiens chromosome 15, clone RP11-6O2, complete sequence Length = 178262 Score = 46.1 bits (23), Expect = 0.093 Identities = 23/23 (100%) Strand = Plus / Plus Query: 218 tccagctccaccccactcacccc 240 ||||||||||||||||||||||| Sbjct: 126949 tccagctccaccccactcacccc 126971
>gb|BC093339.1| Danio rerio zgc:111950, mRNA (cDNA clone MGC:112489 IMAGE:7409821), complete cds Length = 1238 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 313 ctgagggcgggtggcgtcgatg 334 |||||||||||||||||||||| Sbjct: 809 ctgagggcgggtggcgtcgatg 788
>gb|BC096862.1| Danio rerio zgc:111950, mRNA (cDNA clone MGC:111950 IMAGE:7228612), complete cds Length = 1257 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 313 ctgagggcgggtggcgtcgatg 334 |||||||||||||||||||||| Sbjct: 809 ctgagggcgggtggcgtcgatg 788
>ref|NM_001017661.1| Danio rerio zgc:111950 (zgc:111950), mRNA Length = 1238 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 313 ctgagggcgggtggcgtcgatg 334 |||||||||||||||||||||| Sbjct: 809 ctgagggcgggtggcgtcgatg 788
>ref|XM_683156.1| PREDICTED: Danio rerio similar to cysteine proteinase (LOC572960), mRNA Length = 1425 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 313 ctgagggcgggtggcgtcgatg 334 |||||||||||||||||||||| Sbjct: 1101 ctgagggcgggtggcgtcgatg 1080
>emb|BX248517.10| Zebrafish DNA sequence from clone DKEY-30O16 in linkage group 16, complete sequence Length = 201353 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 313 ctgagggcgggtggcgtcgatg 334 |||||||||||||||||||||| Sbjct: 100953 ctgagggcgggtggcgtcgatg 100932
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 205 aaggtggtgaagatccagctc 225 ||||||||||||||||||||| Sbjct: 1921062 aaggtggtgaagatccagctc 1921042
>dbj|AP003621.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0621D05 Length = 180250 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 tggctcgtcaccgccgacgcc 261 ||||||||||||||||||||| Sbjct: 87424 tggctcgtcaccgccgacgcc 87404
>dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0018H04 Length = 142053 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 tggctcgtcaccgccgacgcc 261 ||||||||||||||||||||| Sbjct: 139341 tggctcgtcaccgccgacgcc 139321
>dbj|AK101481.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041C08, full insert sequence Length = 1877 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 241 tggctcgtcaccgccgacgcc 261 ||||||||||||||||||||| Sbjct: 463 tggctcgtcaccgccgacgcc 483
>dbj|AK063291.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-E03, full insert sequence Length = 1842 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 241 tggctcgtcaccgccgacgcc 261 ||||||||||||||||||||| Sbjct: 462 tggctcgtcaccgccgacgcc 482
>gb|AE008989.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 15 of 256 of the complete sequence Length = 10869 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 tcgccgccgcacgcggtggc 159 |||||||||||||||||||| Sbjct: 3412 tcgccgccgcacgcggtggc 3431
>ref|XM_814390.1| Trypanosoma cruzi strain CL Brener 5'-3' exonuclease XRNC (Tc00.1047053504427.130) partial mRNA Length = 2643 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ccgctacgacgtcgccgccg 148 |||||||||||||||||||| Sbjct: 317 ccgctacgacgtcgccgccg 298
>emb|CR847515.10| Zebrafish DNA sequence from clone DKEYP-60A7 in linkage group 9, complete sequence Length = 153947 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 51 ccacaacactgcacatctcatctg 74 |||||||||||||||||| ||||| Sbjct: 70368 ccacaacactgcacatcttatctg 70345
>ref|XM_811698.1| Trypanosoma cruzi strain CL Brener 5'-3' exonuclease XRNC (Tc00.1047053509331.9) partial mRNA Length = 845 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ccgctacgacgtcgccgccg 148 |||||||||||||||||||| Sbjct: 317 ccgctacgacgtcgccgccg 298
>gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0074L11, complete sequence Length = 180703 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 ctggctcgtcaccgccgacg 259 |||||||||||||||||||| Sbjct: 76349 ctggctcgtcaccgccgacg 76368
>emb|BX942815.11| Zebrafish DNA sequence from clone DKEY-26M3 in linkage group 5, complete sequence Length = 155109 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 gaaaggaaagcccactgagg 409 |||||||||||||||||||| Sbjct: 83081 gaaaggaaagcccactgagg 83062
>gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence Length = 147941 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 166 gagatgctccgcctcagggcgttc 189 |||||||||||||||| ||||||| Sbjct: 103304 gagatgctccgcctcaaggcgttc 103327
>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145 biosynthetic gene cluster, complete sequence Length = 126933 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 cgcggtggccacggcgagat 170 |||||||||||||||||||| Sbjct: 29586 cgcggtggccacggcgagat 29605
>gb|AF432972.1| Cyrtochilum weirii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence Length = 746 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 102 gcgctcaagcctacacccacccct 125 |||||||||| ||||||||||||| Sbjct: 616 gcgctcaagcttacacccacccct 593
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 tcgccgccgcacgcggtggc 159 |||||||||||||||||||| Sbjct: 151905 tcgccgccgcacgcggtggc 151924
>gb|AF350856.2|AF350856 Cyrtochilum longipes 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence Length = 750 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 102 gcgctcaagcctacacccacccct 125 |||||||||| ||||||||||||| Sbjct: 619 gcgctcaagcttacacccacccct 596
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 166 gagatgctccgcctcagggcgttc 189 |||||||||||||||| ||||||| Sbjct: 1169236 gagatgctccgcctcaaggcgttc 1169213
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 ctggctcgtcaccgccgacg 259 |||||||||||||||||||| Sbjct: 21724296 ctggctcgtcaccgccgacg 21724315 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 166 gagatgctccgcctcagggcgttc 189 |||||||||||||||| ||||||| Sbjct: 1287311 gagatgctccgcctcaaggcgttc 1287288
>gb|AF497482.1| Micromonospora echinospora calicheamicin biosynthetic locus, complete sequence Length = 90348 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccgctacgacgtcgccgccg 148 |||||||||||||||||||| Sbjct: 2976 ccgctacgacgtcgccgccg 2995
>dbj|AK119830.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-H01, full insert sequence Length = 3157 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 gtcgccgccgcacgcggtgg 158 |||||||||||||||||||| Sbjct: 560 gtcgccgccgcacgcggtgg 579
>dbj|AK121503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022H12, full insert sequence Length = 714 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 166 gagatgctccgcctcagggcgttc 189 |||||||||||||||| ||||||| Sbjct: 225 gagatgctccgcctcaaggcgttc 248
>dbj|AK070035.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038E14, full insert sequence Length = 1526 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 ctggctcgtcaccgccgacg 259 |||||||||||||||||||| Sbjct: 444 ctggctcgtcaccgccgacg 463
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 tgagctgagggcgggtggcg 328 |||||||||||||||||||| Sbjct: 161101 tgagctgagggcgggtggcg 161120
>emb|BX908393.10| Zebrafish DNA sequence from clone CH211-180H19 in linkage group 18, complete sequence Length = 138757 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 ccaccccactcacccctggc 244 |||||||||||||||||||| Sbjct: 56867 ccaccccactcacccctggc 56886
>dbj|AK059550.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G01, full insert sequence Length = 800 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 166 gagatgctccgcctcagggcgttc 189 |||||||||||||||| ||||||| Sbjct: 222 gagatgctccgcctcaaggcgttc 245
>dbj|AK058697.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-B10, full insert sequence Length = 723 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 166 gagatgctccgcctcagggcgttc 189 |||||||||||||||| ||||||| Sbjct: 221 gagatgctccgcctcaaggcgttc 244
>gb|AY664419.1| Zea mays cultivar Mo17 locus 9009, complete sequence Length = 405672 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 cgccgccgcacgcggtggcc 160 |||||||||||||||||||| Sbjct: 158855 cgccgccgcacgcggtggcc 158836
>gb|AY664415.1| Zea mays cultivar B73 locus 9009, complete sequence Length = 323584 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 cgccgccgcacgcggtggcc 160 |||||||||||||||||||| Sbjct: 146946 cgccgccgcacgcggtggcc 146927
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 138 cgtcgccgccgcacgcggtggccacggc 165 ||||||||||||| |||||||| ||||| Sbjct: 3630140 cgtcgccgccgcaggcggtggcgacggc 3630113
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 ctggctcgtcaccgccgacg 259 |||||||||||||||||||| Sbjct: 22034495 ctggctcgtcaccgccgacg 22034514 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 166 gagatgctccgcctcagggcgttc 189 |||||||||||||||| ||||||| Sbjct: 1285032 gagatgctccgcctcaaggcgttc 1285009
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 166 gagatgctccgcctcagggcgttc 189 |||||||||||||||| ||||||| Sbjct: 1169236 gagatgctccgcctcaaggcgttc 1169213
>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 126974 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 166 gagatgctccgcctcagggcgttc 189 |||||||||||||||| ||||||| Sbjct: 108219 gagatgctccgcctcaaggcgttc 108196
>gb|L36313.1|RICRPSAAA Oryza sativa ribosomal protein S16 mRNA, complete cds Length = 687 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 166 gagatgctccgcctcagggcgttc 189 |||||||||||||||| ||||||| Sbjct: 211 gagatgctccgcctcaaggcgttc 234 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,645,747 Number of Sequences: 3902068 Number of extensions: 2645747 Number of successful extensions: 50635 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50121 Number of HSP's gapped (non-prelim): 514 length of query: 428 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 406 effective length of database: 17,147,199,772 effective search space: 6961763107432 effective search space used: 6961763107432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)