ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl25h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK111686.1| Oryza sativa (japonica cultivar-group) cDNA clon... 373 e-100
2dbj|AK111531.1| Oryza sativa (japonica cultivar-group) cDNA clon... 373 e-100
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 234 2e-58
4dbj|AP003709.2| Oryza sativa (japonica cultivar-group) genomic D... 234 2e-58
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 113 5e-22
6dbj|AP003623.3| Oryza sativa (japonica cultivar-group) genomic D... 113 5e-22
7gb|AC036108.19| Homo sapiens chromosome 15, clone RP11-6O2, comp... 46 0.093
8gb|BC093339.1| Danio rerio zgc:111950, mRNA (cDNA clone MGC:1124... 44 0.37
9gb|BC096862.1| Danio rerio zgc:111950, mRNA (cDNA clone MGC:1119... 44 0.37
10ref|NM_001017661.1| Danio rerio zgc:111950 (zgc:111950), mRNA 44 0.37
11ref|XM_683156.1| PREDICTED: Danio rerio similar to cysteine prot... 44 0.37
12emb|BX248517.10| Zebrafish DNA sequence from clone DKEY-30O16 in... 44 0.37
13gb|CP000097.1| Synechococcus sp. CC9902, complete genome 42 1.5
14dbj|AP003621.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
15dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
16dbj|AK101481.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
17dbj|AK063291.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
18gb|AE008989.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 5.7
19ref|XM_814390.1| Trypanosoma cruzi strain CL Brener 5'-3' exonuc... 40 5.7
20emb|CR847515.10| Zebrafish DNA sequence from clone DKEYP-60A7 in... 40 5.7
21ref|XM_811698.1| Trypanosoma cruzi strain CL Brener 5'-3' exonuc... 40 5.7
22gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
23emb|BX942815.11| Zebrafish DNA sequence from clone DKEY-26M3 in ... 40 5.7
24gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
25gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide... 40 5.7
26gb|AF432972.1| Cyrtochilum weirii 18S ribosomal RNA gene, partia... 40 5.7
27gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 5.7
28gb|AF350856.2|AF350856 Cyrtochilum longipes 18S ribosomal RNA ge... 40 5.7
29dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
30dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
31gb|AF497482.1| Micromonospora echinospora calicheamicin biosynth... 40 5.7
32dbj|AK119830.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
33dbj|AK121503.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
34dbj|AK070035.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
35emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 5.7
36emb|BX908393.10| Zebrafish DNA sequence from clone CH211-180H19 ... 40 5.7
37dbj|AK059550.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
38dbj|AK058697.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
39gb|AY664419.1| Zea mays cultivar Mo17 locus 9009, complete sequence 40 5.7
40gb|AY664415.1| Zea mays cultivar B73 locus 9009, complete sequence 40 5.7
41gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 5.7
42gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
43gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
44emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb... 40 5.7
45gb|L36313.1|RICRPSAAA Oryza sativa ribosomal protein S16 mRNA, c... 40 5.7

>dbj|AK111686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170K17, full
           insert sequence
          Length = 4534

 Score =  373 bits (188), Expect = e-100
 Identities = 242/260 (93%)
 Strand = Plus / Plus

                                                                       
Query: 169 atgctccgcctcagggcgttccggccaacgagcgacaaggtggtgaagatccagctccac 228
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 157 atgctccgcctcagggcgttccggccgacgagcgacaaggtggtgaagatccagctccac 216

                                                                       
Query: 229 cccactcacccctggctcgtcaccgccgacgccaatgaccgcgtctcggtctgggactgg 288
           ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 217 cccacgcacccctggctcgtcaccgccgacgccaacgaccgcgtctccgtctgggactgg 276

                                                                       
Query: 289 gagcaccgccaggtgatctatgagctgagggcgggtggcgtcgatgaacggaggctggtt 348
           |||||||||||||||||||| ||||||| |||||||||||| || || ||| || |||||
Sbjct: 277 gagcaccgccaggtgatctacgagctgaaggcgggtggcgtggacgagcggcggttggtt 336

                                                                       
Query: 349 ggtgtgaagcttgagaagctcgccgagggagaaactgattcgaaaggaaagcccactgag 408
           || || |||||||||||||||||||||||||| |||||||| ||||||||||||||||| 
Sbjct: 337 ggagttaagcttgagaagctcgccgagggagacactgattcaaaaggaaagcccactgaa 396

                               
Query: 409 gcaatccgaggcggaagtgt 428
           || |||||||| ||||||||
Sbjct: 397 gccatccgaggtggaagtgt 416



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>dbj|AK111531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022M05, full
           insert sequence
          Length = 2417

 Score =  373 bits (188), Expect = e-100
 Identities = 242/260 (93%)
 Strand = Plus / Plus

                                                                       
Query: 169 atgctccgcctcagggcgttccggccaacgagcgacaaggtggtgaagatccagctccac 228
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 158 atgctccgcctcagggcgttccggccgacgagcgacaaggtggtgaagatccagctccac 217

                                                                       
Query: 229 cccactcacccctggctcgtcaccgccgacgccaatgaccgcgtctcggtctgggactgg 288
           ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 218 cccacgcacccctggctcgtcaccgccgacgccaacgaccgcgtctccgtctgggactgg 277

                                                                       
Query: 289 gagcaccgccaggtgatctatgagctgagggcgggtggcgtcgatgaacggaggctggtt 348
           |||||||||||||||||||| ||||||| |||||||||||| || || ||| || |||||
Sbjct: 278 gagcaccgccaggtgatctacgagctgaaggcgggtggcgtggacgagcggcggttggtt 337

                                                                       
Query: 349 ggtgtgaagcttgagaagctcgccgagggagaaactgattcgaaaggaaagcccactgag 408
           || || |||||||||||||||||||||||||| |||||||| ||||||||||||||||| 
Sbjct: 338 ggagttaagcttgagaagctcgccgagggagacactgattcaaaaggaaagcccactgaa 397

                               
Query: 409 gcaatccgaggcggaagtgt 428
           || |||||||| ||||||||
Sbjct: 398 gccatccgaggtggaagtgt 417



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  234 bits (118), Expect = 2e-58
 Identities = 130/134 (97%)
 Strand = Plus / Minus

                                                                            
Query: 169      atgctccgcctcagggcgttccggccaacgagcgacaaggtggtgaagatccagctccac 228
                |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 26459055 atgctccgcctcagggcgttccggccgacgagcgacaaggtggtgaagatccagctccac 26458996

                                                                            
Query: 229      cccactcacccctggctcgtcaccgccgacgccaatgaccgcgtctcggtctgggactgg 288
                ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 26458995 cccacgcacccctggctcgtcaccgccgacgccaacgaccgcgtctccgtctgggactgg 26458936

                              
Query: 289      gagcaccgccaggt 302
                ||||||||||||||
Sbjct: 26458935 gagcaccgccaggt 26458922



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                            
Query: 299      aggtgatctatgagctgagggcgggtggcgtcgatgaacggaggctggttggtgtgaagc 358
                |||||||||| ||||||| |||||||||||| || || ||| || ||||||| || ||||
Sbjct: 26458771 aggtgatctacgagctgaaggcgggtggcgtggacgagcggcggttggttggagttaagc 26458712

                                           
Query: 359      ttgagaagctcgccgagggagaaactg 385
                |||||||||||||||||||||| ||||
Sbjct: 26458711 ttgagaagctcgccgagggagacactg 26458685



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                         
Query: 385      gattcgaaaggaaagcccactgaggcaatccgaggcggaag 425
                ||||| ||||||||||||||||| || |||||||| |||||
Sbjct: 26457764 gattcaaaaggaaagcccactgaagccatccgaggtggaag 26457724



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>dbj|AP003709.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0006H05
          Length = 154821

 Score =  234 bits (118), Expect = 2e-58
 Identities = 130/134 (97%)
 Strand = Plus / Minus

                                                                         
Query: 169   atgctccgcctcagggcgttccggccaacgagcgacaaggtggtgaagatccagctccac 228
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 67674 atgctccgcctcagggcgttccggccgacgagcgacaaggtggtgaagatccagctccac 67615

                                                                         
Query: 229   cccactcacccctggctcgtcaccgccgacgccaatgaccgcgtctcggtctgggactgg 288
             ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 67614 cccacgcacccctggctcgtcaccgccgacgccaacgaccgcgtctccgtctgggactgg 67555

                           
Query: 289   gagcaccgccaggt 302
             ||||||||||||||
Sbjct: 67554 gagcaccgccaggt 67541



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                         
Query: 299   aggtgatctatgagctgagggcgggtggcgtcgatgaacggaggctggttggtgtgaagc 358
             |||||||||| ||||||| |||||||||||| || || ||| || ||||||| || ||||
Sbjct: 67390 aggtgatctacgagctgaaggcgggtggcgtggacgagcggcggttggttggagttaagc 67331

                                        
Query: 359   ttgagaagctcgccgagggagaaactg 385
             |||||||||||||||||||||| ||||
Sbjct: 67330 ttgagaagctcgccgagggagacactg 67304



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 385   gattcgaaaggaaagcccactgaggcaatccgaggcggaag 425
             ||||| ||||||||||||||||| || |||||||| |||||
Sbjct: 66383 gattcaaaaggaaagcccactgaagccatccgaggtggaag 66343



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  113 bits (57), Expect = 5e-22
 Identities = 84/93 (90%)
 Strand = Plus / Minus

                                                                            
Query: 176      gcctcagggcgttccggccaacgagcgacaaggtggtgaagatccagctccaccccactc 235
                ||||||||||||| ||||| || || ||||||||||||||||||||  |||||||||| |
Sbjct: 23238161 gcctcagggcgtttcggcctaccagagacaaggtggtgaagatccaattccaccccacgc 23238102

                                                 
Query: 236      acccctggctcgtcaccgccgacgccaatgacc 268
                |||||||||||||| ||||| ||||||||||||
Sbjct: 23238101 acccctggctcgtcgccgccaacgccaatgacc 23238069



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 241      tggctcgtcaccgccgacgcc 261
                |||||||||||||||||||||
Sbjct: 29376543 tggctcgtcaccgccgacgcc 29376523



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>dbj|AP003623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0642B07
          Length = 139297

 Score =  113 bits (57), Expect = 5e-22
 Identities = 84/93 (90%)
 Strand = Plus / Minus

                                                                         
Query: 176   gcctcagggcgttccggccaacgagcgacaaggtggtgaagatccagctccaccccactc 235
             ||||||||||||| ||||| || || ||||||||||||||||||||  |||||||||| |
Sbjct: 72923 gcctcagggcgtttcggcctaccagagacaaggtggtgaagatccaattccaccccacgc 72864

                                              
Query: 236   acccctggctcgtcaccgccgacgccaatgacc 268
             |||||||||||||| ||||| ||||||||||||
Sbjct: 72863 acccctggctcgtcgccgccaacgccaatgacc 72831



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>gb|AC036108.19| Homo sapiens chromosome 15, clone RP11-6O2, complete sequence
          Length = 178262

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 218    tccagctccaccccactcacccc 240
              |||||||||||||||||||||||
Sbjct: 126949 tccagctccaccccactcacccc 126971



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>gb|BC093339.1| Danio rerio zgc:111950, mRNA (cDNA clone MGC:112489 IMAGE:7409821),
           complete cds
          Length = 1238

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 313 ctgagggcgggtggcgtcgatg 334
           ||||||||||||||||||||||
Sbjct: 809 ctgagggcgggtggcgtcgatg 788



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>gb|BC096862.1| Danio rerio zgc:111950, mRNA (cDNA clone MGC:111950 IMAGE:7228612),
           complete cds
          Length = 1257

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 313 ctgagggcgggtggcgtcgatg 334
           ||||||||||||||||||||||
Sbjct: 809 ctgagggcgggtggcgtcgatg 788



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>ref|NM_001017661.1| Danio rerio zgc:111950 (zgc:111950), mRNA
          Length = 1238

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 313 ctgagggcgggtggcgtcgatg 334
           ||||||||||||||||||||||
Sbjct: 809 ctgagggcgggtggcgtcgatg 788



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>ref|XM_683156.1| PREDICTED: Danio rerio similar to cysteine proteinase (LOC572960),
            mRNA
          Length = 1425

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 313  ctgagggcgggtggcgtcgatg 334
            ||||||||||||||||||||||
Sbjct: 1101 ctgagggcgggtggcgtcgatg 1080



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>emb|BX248517.10| Zebrafish DNA sequence from clone DKEY-30O16 in linkage group 16,
              complete sequence
          Length = 201353

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 313    ctgagggcgggtggcgtcgatg 334
              ||||||||||||||||||||||
Sbjct: 100953 ctgagggcgggtggcgtcgatg 100932



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>gb|CP000097.1| Synechococcus sp. CC9902, complete genome
          Length = 2234828

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 205     aaggtggtgaagatccagctc 225
               |||||||||||||||||||||
Sbjct: 1921062 aaggtggtgaagatccagctc 1921042



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>dbj|AP003621.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0621D05
          Length = 180250

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 241   tggctcgtcaccgccgacgcc 261
             |||||||||||||||||||||
Sbjct: 87424 tggctcgtcaccgccgacgcc 87404



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>dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0018H04
          Length = 142053

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 241    tggctcgtcaccgccgacgcc 261
              |||||||||||||||||||||
Sbjct: 139341 tggctcgtcaccgccgacgcc 139321



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>dbj|AK101481.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041C08, full
           insert sequence
          Length = 1877

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 241 tggctcgtcaccgccgacgcc 261
           |||||||||||||||||||||
Sbjct: 463 tggctcgtcaccgccgacgcc 483



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>dbj|AK063291.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-E03, full
           insert sequence
          Length = 1842

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 241 tggctcgtcaccgccgacgcc 261
           |||||||||||||||||||||
Sbjct: 462 tggctcgtcaccgccgacgcc 482



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>gb|AE008989.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 15 of
            256 of the complete sequence
          Length = 10869

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 140  tcgccgccgcacgcggtggc 159
            ||||||||||||||||||||
Sbjct: 3412 tcgccgccgcacgcggtggc 3431



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>ref|XM_814390.1| Trypanosoma cruzi strain CL Brener 5'-3' exonuclease XRNC
           (Tc00.1047053504427.130) partial mRNA
          Length = 2643

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 129 ccgctacgacgtcgccgccg 148
           ||||||||||||||||||||
Sbjct: 317 ccgctacgacgtcgccgccg 298



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>emb|CR847515.10| Zebrafish DNA sequence from clone DKEYP-60A7 in linkage group 9,
             complete sequence
          Length = 153947

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 51    ccacaacactgcacatctcatctg 74
             |||||||||||||||||| |||||
Sbjct: 70368 ccacaacactgcacatcttatctg 70345



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>ref|XM_811698.1| Trypanosoma cruzi strain CL Brener 5'-3' exonuclease XRNC
           (Tc00.1047053509331.9) partial mRNA
          Length = 845

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 129 ccgctacgacgtcgccgccg 148
           ||||||||||||||||||||
Sbjct: 317 ccgctacgacgtcgccgccg 298



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>gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0074L11, complete sequence
          Length = 180703

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   ctggctcgtcaccgccgacg 259
             ||||||||||||||||||||
Sbjct: 76349 ctggctcgtcaccgccgacg 76368



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>emb|BX942815.11| Zebrafish DNA sequence from clone DKEY-26M3 in linkage group 5,
             complete sequence
          Length = 155109

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 390   gaaaggaaagcccactgagg 409
             ||||||||||||||||||||
Sbjct: 83081 gaaaggaaagcccactgagg 83062



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>gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15,
              complete sequence
          Length = 147941

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 166    gagatgctccgcctcagggcgttc 189
              |||||||||||||||| |||||||
Sbjct: 103304 gagatgctccgcctcaaggcgttc 103327



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>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145
             biosynthetic gene cluster, complete sequence
          Length = 126933

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   cgcggtggccacggcgagat 170
             ||||||||||||||||||||
Sbjct: 29586 cgcggtggccacggcgagat 29605



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>gb|AF432972.1| Cyrtochilum weirii 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 746

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 102 gcgctcaagcctacacccacccct 125
           |||||||||| |||||||||||||
Sbjct: 616 gcgctcaagcttacacccacccct 593



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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    tcgccgccgcacgcggtggc 159
              ||||||||||||||||||||
Sbjct: 151905 tcgccgccgcacgcggtggc 151924



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>gb|AF350856.2|AF350856 Cyrtochilum longipes 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 750

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 102 gcgctcaagcctacacccacccct 125
           |||||||||| |||||||||||||
Sbjct: 619 gcgctcaagcttacacccacccct 596



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 166     gagatgctccgcctcagggcgttc 189
               |||||||||||||||| |||||||
Sbjct: 1169236 gagatgctccgcctcaaggcgttc 1169213



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 240      ctggctcgtcaccgccgacg 259
                ||||||||||||||||||||
Sbjct: 21724296 ctggctcgtcaccgccgacg 21724315



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 166     gagatgctccgcctcagggcgttc 189
               |||||||||||||||| |||||||
Sbjct: 1287311 gagatgctccgcctcaaggcgttc 1287288



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>gb|AF497482.1| Micromonospora echinospora calicheamicin biosynthetic locus, complete
            sequence
          Length = 90348

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 129  ccgctacgacgtcgccgccg 148
            ||||||||||||||||||||
Sbjct: 2976 ccgctacgacgtcgccgccg 2995



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>dbj|AK119830.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-H01, full
           insert sequence
          Length = 3157

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 gtcgccgccgcacgcggtgg 158
           ||||||||||||||||||||
Sbjct: 560 gtcgccgccgcacgcggtgg 579



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>dbj|AK121503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022H12, full
           insert sequence
          Length = 714

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 166 gagatgctccgcctcagggcgttc 189
           |||||||||||||||| |||||||
Sbjct: 225 gagatgctccgcctcaaggcgttc 248



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>dbj|AK070035.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038E14, full
           insert sequence
          Length = 1526

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 240 ctggctcgtcaccgccgacg 259
           ||||||||||||||||||||
Sbjct: 444 ctggctcgtcaccgccgacg 463



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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    tgagctgagggcgggtggcg 328
              ||||||||||||||||||||
Sbjct: 161101 tgagctgagggcgggtggcg 161120



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>emb|BX908393.10| Zebrafish DNA sequence from clone CH211-180H19 in linkage group 18,
             complete sequence
          Length = 138757

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   ccaccccactcacccctggc 244
             ||||||||||||||||||||
Sbjct: 56867 ccaccccactcacccctggc 56886



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>dbj|AK059550.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G01, full
           insert sequence
          Length = 800

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 166 gagatgctccgcctcagggcgttc 189
           |||||||||||||||| |||||||
Sbjct: 222 gagatgctccgcctcaaggcgttc 245



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>dbj|AK058697.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-B10, full
           insert sequence
          Length = 723

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 166 gagatgctccgcctcagggcgttc 189
           |||||||||||||||| |||||||
Sbjct: 221 gagatgctccgcctcaaggcgttc 244



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>gb|AY664419.1| Zea mays cultivar Mo17 locus 9009, complete sequence
          Length = 405672

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 141    cgccgccgcacgcggtggcc 160
              ||||||||||||||||||||
Sbjct: 158855 cgccgccgcacgcggtggcc 158836



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>gb|AY664415.1| Zea mays cultivar B73 locus 9009, complete sequence
          Length = 323584

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 141    cgccgccgcacgcggtggcc 160
              ||||||||||||||||||||
Sbjct: 146946 cgccgccgcacgcggtggcc 146927



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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 138     cgtcgccgccgcacgcggtggccacggc 165
               ||||||||||||| |||||||| |||||
Sbjct: 3630140 cgtcgccgccgcaggcggtggcgacggc 3630113



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 240      ctggctcgtcaccgccgacg 259
                ||||||||||||||||||||
Sbjct: 22034495 ctggctcgtcaccgccgacg 22034514



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 166     gagatgctccgcctcagggcgttc 189
               |||||||||||||||| |||||||
Sbjct: 1285032 gagatgctccgcctcaaggcgttc 1285009



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 166     gagatgctccgcctcagggcgttc 189
               |||||||||||||||| |||||||
Sbjct: 1169236 gagatgctccgcctcaaggcgttc 1169213



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>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 126974

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 166    gagatgctccgcctcagggcgttc 189
              |||||||||||||||| |||||||
Sbjct: 108219 gagatgctccgcctcaaggcgttc 108196



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>gb|L36313.1|RICRPSAAA Oryza sativa ribosomal protein S16 mRNA, complete cds
          Length = 687

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 166 gagatgctccgcctcagggcgttc 189
           |||||||||||||||| |||||||
Sbjct: 211 gagatgctccgcctcaaggcgttc 234


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,645,747
Number of Sequences: 3902068
Number of extensions: 2645747
Number of successful extensions: 50635
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50121
Number of HSP's gapped (non-prelim): 514
length of query: 428
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 406
effective length of database: 17,147,199,772
effective search space: 6961763107432
effective search space used: 6961763107432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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