ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl25h07 |
|---|---|
| Clone Library Name | barley_pub |
>RNFC_VIBCH (Q9KT88) Electron transport complex protein rnfC| Length = 774 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -2 Query: 153 FSLPVTDGPCTQPCSCILIPCAAEVTTSKQEL 58 F+LP P T+ +CIL P E+T+S E+ Sbjct: 345 FTLPHAQVPITKTANCILAPTRNELTSSDNEM 376
>SMC4_XENLA (P50532) Structural maintenance of chromosome 4| (Chromosome-associated protein C) (Chromosome assembly protein XCAP-C) Length = 1290 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +2 Query: 146 KEKTSSLNNVKSPRCKKSGGLRGKKDMVQDPHMKQKTKNKNIADDI 283 KEK L NV + K KKD+++ K++ K KN+ D + Sbjct: 416 KEKVDELKNVPANSQKIIAEETNKKDLLEKQKEKEEEKLKNVMDSL 461
>GH317_ARATH (Q9FZ87) Indole-3-acetic acid-amido synthetase GH3.17 (EC 6.3.2.-)| (Auxin-responsive GH3-like protein 17) (AtGH3-17) Length = 609 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/16 (75%), Positives = 13/16 (81%) Frame = +2 Query: 158 SSLNNVKSPRCKKSGG 205 SSLN K+PRC KSGG Sbjct: 566 SSLNQYKTPRCVKSGG 581
>STAB2_HUMAN (Q8WWQ8) Stabilin-2 precursor (FEEL-2 protein) (Fasciclin EGF-like| laminin-type EGF-like and link domain-containing scavenger receptor 1) (FAS1 EGF-like and X-link domain-containing adhesion molecule 2) (Hyaluronan receptor for endocytosis) [ Length = 2551 Score = 28.5 bits (62), Expect = 4.3 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 1/83 (1%) Frame = -2 Query: 285 RMSSAIFLFLVFCFICGSCTISXXXXXXX-XXLHLGDFTLLSELVFSLPVTDGPCTQPCS 109 + +SA ++ FC I +C S + GD TL SE+ +T G C++ Sbjct: 825 KQTSACGPYVQFCHIHATCEYSNGTASCICKAGYEGDGTLCSEMDPCTGLTPGGCSRNAE 884 Query: 108 CILIPCAAEVTTSKQELNFKGPD 40 CI +Q G D Sbjct: 885 CIKTGTGTHTCVCQQGWTGNGRD 907
>RL4_BRAPL (Q9FA03) 50S ribosomal protein L4| Length = 215 Score = 27.7 bits (60), Expect = 7.3 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Frame = +2 Query: 146 KEKTSSLNNVKSPRCKKSGGLRGKKDMVQDPHMKQKTKNKNIADDILIDSGS-SILPYQL 322 K S ++ VK P +K + GK + + D + K +NI D L+++ S SI P Sbjct: 136 KRMASFISKVKEPNSRKVAFVVGKDESLGDNYNKLLLSLRNIKDLKLVNADSMSIHPLYY 195 Query: 323 ATDL 334 A ++ Sbjct: 196 ADEV 199
>JSN1_YEAST (P47135) Protein JSN1 (Protein PUF1)| Length = 1091 Score = 27.7 bits (60), Expect = 7.3 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 2/98 (2%) Frame = +2 Query: 26 SSLVSSGPLKFSSCFEVVTSAAQGISMHEHGWVQGPSVTGK--EKTSSLNNVKSPRCKKS 199 S++ S P S +++ S+ G++M G + P K S NN P Sbjct: 98 STVASKTPRASPSRSKMMESSIDGVTMDRPGSLTPPQDMEKLVHFPDSSNNFLIP----- 152 Query: 200 GGLRGKKDMVQDPHMKQKTKNKNIADDILIDSGSSILP 313 RG D PH +T+N ++ I S SSI P Sbjct: 153 -APRGSSDSFNLPHQISRTRNNTMSSQ--ITSISSIAP 187
>AROA_CHLCV (Q822G0) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)| (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) Length = 446 Score = 27.7 bits (60), Expect = 7.3 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 12/74 (16%) Frame = +2 Query: 155 TSSLNN-VKSP-------RCKKSGGLRGKK----DMVQDPHMKQKTKNKNIADDILIDSG 298 TS++NN ++SP CK+ G KK ++ PH++ + DI ID+G Sbjct: 37 TSTINNPLESPDSEAMIQACKQLGAKIYKKSSSLEITGTPHLR-------LPKDIAIDAG 89 Query: 299 SSILPYQLATDLAA 340 SS + ++ T LAA Sbjct: 90 SSGIVFRFFTALAA 103
>VDAC1_WHEAT (P46274) Outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) Length = 275 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = +2 Query: 242 MKQKTKNKNIADDILIDSGSSILPYQLATDLAA 340 ++ + KNKNI D+ +S S+++ A DLAA Sbjct: 55 IQSQIKNKNITVDVKANSASNVITTITADDLAA 87
>TSH2_HUMAN (Q9NRE2) Teashirt homolog 2 (Zinc finger protein 218) (Ovarian| cancer-related protein 10-2) (OVC10-2) Length = 1034 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = -2 Query: 144 PVTDGPCTQPCSCILIPCAAEVTTSKQELNFKGPDETSED 25 P +D +P S C A T K+E + P+ETS+D Sbjct: 436 PNSDSLAPKPSSNSASDCTASTTELKKESKKERPEETSKD 475
>NRP1_CHICK (P79795) Neuropilin-1 precursor (A5 protein)| Length = 914 Score = 27.3 bits (59), Expect = 9.6 Identities = 18/54 (33%), Positives = 25/54 (46%) Frame = +2 Query: 23 PSSLVSSGPLKFSSCFEVVTSAAQGISMHEHGWVQGPSVTGKEKTSSLNNVKSP 184 P LVSSGP F + G S+ + +GP + + TSS +KSP Sbjct: 107 PPPLVSSGPYLFIKFVSDYETHGAGFSIRYEVFKRGPECS-RNFTSSSGMIKSP 159
>MATK_BARAL (Q5I6K6) Maturase K (Intron maturase)| Length = 510 Score = 27.3 bits (59), Expect = 9.6 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Frame = -3 Query: 320 ADKVKWMIQNQ*ECHLLYFYSWFFASYVDPAP-YPSSL*DHHFSCTSVISHC*VN 159 A K + N+ +C+L+ F+ W F+ + P Y + L +H F+ +S +N Sbjct: 288 ASKGTSLFMNKWKCYLITFWQWHFSLWFYPRRIYINQLSNHSFAFLGYLSSLRMN 342
>HEMK_SALTY (P40816) Protein methyltransferase hemK (EC 2.1.1.-)| (Protein-glutamine N-methyltransferase hemK) (Protein-(glutamine-N5) MTase hemK) (M.StyLTHemKP) Length = 277 Score = 27.3 bits (59), Expect = 9.6 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +2 Query: 95 GISMHEHGWVQGPSVTGKEKTSSLNNVKSPRCKKSGG 205 G + EHGW QG +V + S ++V++ C+ GG Sbjct: 232 GFLLLEHGWQQGEAVRAVFRRSGYSDVET--CRDYGG 266 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,425,419 Number of Sequences: 219361 Number of extensions: 925552 Number of successful extensions: 2232 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2202 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2232 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
