ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl25h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AVP_HORVU (Q06572) Pyrophosphate-energized vacuolar membrane pro... 50 2e-06
2AVP_PHAAU (P21616) Pyrophosphate-energized vacuolar membrane pro... 40 0.002
3AVP1_ARATH (P31414) Pyrophosphate-energized vacuolar membrane pr... 37 0.015

>AVP_HORVU (Q06572) Pyrophosphate-energized vacuolar membrane proton pump (EC|
           3.6.1.1) (Pyrophosphate-energized inorganic
           pyrophosphatase) (H(+)-PPase)
          Length = 762

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +2

Query: 101 MAILGELGTEILIPVCGVIGIVFA 172
           MAILGELGTEILIPVCGVIGIVFA
Sbjct: 1   MAILGELGTEILIPVCGVIGIVFA 24



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>AVP_PHAAU (P21616) Pyrophosphate-energized vacuolar membrane proton pump (EC|
           3.6.1.1) (Pyrophosphate-energized inorganic
           pyrophosphatase) (H(+)-PPase) (Vacuolar
           H(+)-pyrophosphatase)
          Length = 764

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 19/23 (82%), Positives = 20/23 (86%)
 Frame = +2

Query: 104 AILGELGTEILIPVCGVIGIVFA 172
           AIL +LGTEILIPVC VIGI FA
Sbjct: 3   AILPDLGTEILIPVCAVIGIAFA 25



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>AVP1_ARATH (P31414) Pyrophosphate-energized vacuolar membrane proton pump 1|
           (EC 3.6.1.1) (Pyrophosphate-energized inorganic
           pyrophosphatase 1) (H(+)-PPase 1) (Vacuolar proton
           pyrophosphatase 1) (Vacuolar proton pyrophosphatase 3)
          Length = 770

 Score = 37.0 bits (84), Expect = 0.015
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +2

Query: 92  LTAMAILGELGTEILIPVCGVIGIVFA 172
           + A A+L EL TEIL+P+C VIGI F+
Sbjct: 1   MVAPALLPELWTEILVPICAVIGIAFS 27


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.138    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,064,761
Number of Sequences: 219361
Number of extensions: 90167
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 80,573,946
effective HSP length: 33
effective length of database: 73,335,033
effective search space used: 1760040792
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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