ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl25h06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|D13472.2|BLYINOPP Hordeum vulgare mRNA for vacuolar membrane... 184 6e-44
2gb|AY296911.1| Triticum aestivum vacuolar proton-inorganic pyrop... 133 2e-28
3gb|AY103622.1| Zea mays PCO084888 mRNA sequence 48 0.009
4gb|AY860110.1| Micromonospora rosaria strain SCC2095 plasmid pMR... 44 0.14
5emb|AL158052.10| Human DNA sequence from clone RP11-570J20 on ch... 44 0.14
6gb|AC006450.13|AC006450 Homo sapiens chromosome 9, clone RP11-85... 44 0.14
7gb|AY106681.1| Zea mays PCO136360 mRNA sequence 44 0.14
8gb|AC163391.4| Mus musculus chromosome 3, clone RP23-173N16, com... 42 0.54
9gb|AC102465.11| Mus musculus chromosome 3, clone RP24-333O23, co... 42 0.54
10gb|AC115041.15| Mus musculus chromosome 3, clone RP24-285A14, co... 42 0.54
11ref|XM_475286.1| Oryza sativa (japonica cultivar-group), predic... 40 2.1
12gb|AY022083.1| Oryza sativa microsatellite MRG4408 containing (T... 40 2.1
13gb|AC079936.7| Oryza sativa (japonica cultivar-group) chromosome... 40 2.1
14gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome... 40 2.1
15emb|Z98981.3|SPAC6F6 S.pombe chromosome I cosmid c6F6 40 2.1
16gb|AC091734.3| Genomic Sequence for Oryza sativa, Nipponbare str... 40 2.1
17gb|AC153857.7| Mus musculus 6 BAC RP23-158G17 (Roswell Park Canc... 40 2.1
18ref|NM_001019330.1| Schizosaccharomyces pombe 972h- hypothetical... 40 2.1
19dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
20dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
21dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
22gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 2.1
23gb|AC154430.3| Mus musculus BAC clone RP24-208K8 from chromosome... 40 2.1
24dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
25dbj|AK066933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.1
26emb|X67030.1|SPRPS13G S.pombe rps13 gene for ribosomal protein S13 40 2.1
27emb|AL928581.8| Mouse DNA sequence from clone RP23-318H20 on chr... 40 2.1
28dbj|AB012766.1| Oryza sativa gene for ovp2, complete cds 40 2.1
29gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 2.1
30dbj|D45384.1| Oryza sativa mRNA for vacuolar H+-pyrophosphatase,... 40 2.1
31gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 38 8.4
32gb|AC135918.3| Oryza sativa (japonica cultivar-group) chromosome... 38 8.4
33gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, co... 38 8.4
34gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 38 8.4
35gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 38 8.4
36gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 38 8.4
37ref|XM_387224.1| Gibberella zeae PH-1 chromosome 4 RS13_XENLA 40... 38 8.4
38ref|XM_798851.1| Trypanosoma cruzi strain CL Brener hypothetical... 38 8.4
39gb|AC129020.4| Mus musculus BAC clone RP23-234A5 from chromosome... 38 8.4
40ref|XM_803328.1| Trypanosoma cruzi strain CL Brener hypothetical... 38 8.4
41gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 38 8.4
42gb|AC073585.8| Homo sapiens chromosome 10 clone RP11-564D11, com... 38 8.4
43gb|AC015933.9| Homo sapiens chromosome 18, clone CTD-2023G8, com... 38 8.4
44emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 38 8.4
45emb|BX640426.1| Bordetella parapertussis strain 12822, complete ... 38 8.4
46emb|BX640418.1| Bordetella pertussis strain Tohama I, complete g... 38 8.4
47emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genom... 38 8.4
48emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 38 8.4
49emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete ... 38 8.4
50emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete ... 38 8.4
51emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete ... 38 8.4
52emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; s... 38 8.4
53emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; s... 38 8.4
54dbj|AB226110.1| Aspergillus oryzae cDNA, contig sequence: AoEST2967 38 8.4
55gb|CP000133.1| Rhizobium etli CFN 42, complete genome 38 8.4
56dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 38 8.4
57gb|AC098865.2| Homo sapiens BAC clone RP11-374O3 from 4, complet... 38 8.4
58gb|AC092629.2| Homo sapiens BAC clone RP11-280J8 from 4, complet... 38 8.4
59gb|AC048362.14| Mus musculus, clone RP23-105E2, complete sequence 38 8.4
60gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 38 8.4
61dbj|AK075611.1| Mus musculus adult male brain cDNA, RIKEN full-l... 38 8.4
62gb|AC154312.2| Mus musculus BAC clone RP23-354D20 from chromosom... 38 8.4
63dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 38 8.4
64gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 38 8.4
65gb|AC009298.3| Homo sapiens BAC clone RP11-17I6 from 2, complete... 38 8.4
66dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 38 8.4
67emb|AJ340490.1|HSA340490 Homo sapiens genomic sequence surroundi... 38 8.4
68gb|AC131727.4| Mus musculus BAC clone RP23-120E19 from 14, compl... 38 8.4
69gb|AC151833.3| Mus musculus BAC clone RP23-374P15 from 14, compl... 38 8.4
70gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 38 8.4
71gb|AC166329.3| Pan troglodytes BAC clone CH251-143I6 from chromo... 38 8.4
72gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 38 8.4
73dbj|AP003123.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 38 8.4 
>dbj|D13472.2|BLYINOPP Hordeum vulgare mRNA for vacuolar membrane proton-translocating
           inorganic pyrophosphatase, complete cds
          Length = 2649

 Score =  184 bits (93), Expect = 6e-44
 Identities = 96/97 (98%)
 Strand = Plus / Plus

                                                                       
Query: 77  cgtcggcctgccagcctgacagccatggcgatcctcggggagctcgggacggagatcctc 136
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cgtcggcctgccagccagacagccatggcgatcctcggggagctcgggacggagatcctc 60

                                                
Query: 137 atccccgtctgcggggtcatcggcatcgtcttcgccg 173
           |||||||||||||||||||||||||||||||||||||
Sbjct: 61  atccccgtctgcggggtcatcggcatcgtcttcgccg 97
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>gb|AY296911.1| Triticum aestivum vacuolar proton-inorganic pyrophosphatase mRNA,
           complete cds
          Length = 2671

 Score =  133 bits (67), Expect = 2e-28
 Identities = 73/75 (97%)
 Strand = Plus / Plus

                                                                       
Query: 99  ccatggcgatcctcggggagctcgggacggagatcctcatccccgtctgcggggtcatcg 158
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 29  ccatggcgatcctcggggagctcgggaccgagatcctcatccccgtctgcggggtcgtcg 88

                          
Query: 159 gcatcgtcttcgccg 173
           |||||||||||||||
Sbjct: 89  gcatcgtcttcgccg 103
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>gb|AY103622.1| Zea mays PCO084888 mRNA sequence
          Length = 2801

 Score = 48.1 bits (24), Expect = 0.009
 Identities = 63/76 (82%)
 Strand = Plus / Plus

                                                                       
Query: 98  gccatggcgatcctcggggagctcgggacggagatcctcatccccgtctgcggggtcatc 157
           |||||||||||||||  || |||||  || ||| | ||||||||||||  ||  ||||||
Sbjct: 88  gccatggcgatcctctcggcgctcgccaccgaggtgctcatccccgtcgccgccgtcatc 147

                           
Query: 158 ggcatcgtcttcgccg 173
           ||||||| ||||||||
Sbjct: 148 ggcatcgccttcgccg 163
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>gb|AY860110.1| Micromonospora rosaria strain SCC2095 plasmid pMR2, complete sequence
          Length = 11188

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 37   cccaccccgcccgccgccgtccggtc 62
            ||||||||| ||||||||||||||||
Sbjct: 2374 cccaccccggccgccgccgtccggtc 2349
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>emb|AL158052.10| Human DNA sequence from clone RP11-570J20 on chromosome 9q33.1-34.12
             Contains three novel genes, the 3' end of the LHX2 gene
             for LIM homeobox protein 2 and four CpG islands, complete
             sequence
          Length = 221887

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 37    cccaccccgcccgccgccgtcc 58
             ||||||||||||||||||||||
Sbjct: 18119 cccaccccgcccgccgccgtcc 18098
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>gb|AC006450.13|AC006450 Homo sapiens chromosome 9, clone RP11-85O21, complete sequence
          Length = 177555

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 37    cccaccccgcccgccgccgtcc 58
             ||||||||||||||||||||||
Sbjct: 33152 cccaccccgcccgccgccgtcc 33173
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>gb|AY106681.1| Zea mays PCO136360 mRNA sequence
          Length = 1141

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 148 cggggtcatcggcatcgtcttc 169
           ||||||||||||||||||||||
Sbjct: 933 cggggtcatcggcatcgtcttc 954
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>gb|AC163391.4| Mus musculus chromosome 3, clone RP23-173N16, complete sequence
          Length = 187855

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 86    gccagcctgacagccatggcg 106
             |||||||||||||||||||||
Sbjct: 10456 gccagcctgacagccatggcg 10436
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>gb|AC102465.11| Mus musculus chromosome 3, clone RP24-333O23, complete sequence
          Length = 138893

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 86    gccagcctgacagccatggcg 106
             |||||||||||||||||||||
Sbjct: 25309 gccagcctgacagccatggcg 25289
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>gb|AC115041.15| Mus musculus chromosome 3, clone RP24-285A14, complete sequence
          Length = 149484

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 86     gccagcctgacagccatggcg 106
              |||||||||||||||||||||
Sbjct: 110603 gccagcctgacagccatggcg 110583
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>ref|XM_475286.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 621

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 150 gggtcatcggcatcgtcttcgccg 173
           ||||| ||||||||||||||||||
Sbjct: 278 gggtcgtcggcatcgtcttcgccg 301
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>gb|AY022083.1| Oryza sativa microsatellite MRG4408 containing (TC)X15, genomic
           sequence
          Length = 230

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 36  tcccaccccgcccgccgccg 55
           ||||||||||||||||||||
Sbjct: 227 tcccaccccgcccgccgccg 208
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>gb|AC079936.7| Oryza sativa (japonica cultivar-group) chromosome X clone
             OSJNBb0061I18, complete sequence
          Length = 143163

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    tcccaccccgcccgccgccg 55
             ||||||||||||||||||||
Sbjct: 14658 tcccaccccgcccgccgccg 14677
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>gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1301_G07,
             complete sequence
          Length = 106166

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 150   gggtcatcggcatcgtcttcgccg 173
             ||||| ||||||||||||||||||
Sbjct: 75795 gggtcgtcggcatcgtcttcgccg 75818
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>emb|Z98981.3|SPAC6F6 S.pombe chromosome I cosmid c6F6
          Length = 43307

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   gatcctcggggagctcggga 125
             ||||||||||||||||||||
Sbjct: 21137 gatcctcggggagctcggga 21156
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>gb|AC091734.3| Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0068A07, from Chromosome 10, complete sequence
          Length = 154505

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    tcccaccccgcccgccgccg 55
             ||||||||||||||||||||
Sbjct: 10942 tcccaccccgcccgccgccg 10923
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>gb|AC153857.7| Mus musculus 6 BAC RP23-158G17 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 215780

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     cccccctcatcccaccccgc 46
              ||||||||||||||||||||
Sbjct: 101292 cccccctcatcccaccccgc 101311
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>ref|NM_001019330.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC6F6.07c),
           partial mRNA
          Length = 456

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 gatcctcggggagctcggga 125
           ||||||||||||||||||||
Sbjct: 262 gatcctcggggagctcggga 243
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 36       tcccaccccgcccgccgccg 55
                ||||||||||||||||||||
Sbjct: 12489517 tcccaccccgcccgccgccg 12489498
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                               
Query: 98      gccatggcgatcctcggggagctcgggacggagatcctcatccccgtc 145
               |||||||||||||||  || ||||||||| ||| |  |||||||||||
Sbjct: 3930453 gccatggcgatcctctcggcgctcgggaccgaggtgttcatccccgtc 3930500
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 150      gggtcatcggcatcgtcttcgccg 173
                ||||| ||||||||||||||||||
Sbjct: 21096930 gggtcgtcggcatcgtcttcgccg 21096953



 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 35      atcccaccccgcccgccgc 53
               |||||||||||||||||||
Sbjct: 6522735 atcccaccccgcccgccgc 6522753
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 72      ggtttcgtcggcctgccagc 91
               ||||||||||||||||||||
Sbjct: 2831217 ggtttcgtcggcctgccagc 2831198
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>gb|AC154430.3| Mus musculus BAC clone RP24-208K8 from chromosome 16, complete sequence
          Length = 178222

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 82    gcctgccagcctgacagccatggc 105
             ||||||||||||| ||||||||||
Sbjct: 45785 gcctgccagcctgccagccatggc 45762
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>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0035I03
          Length = 153749

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                             
Query: 98    gccatggcgatcctcggggagctcgggacggagatcctcatccccgtc 145
             |||||||||||||||  || ||||||||| ||| |  |||||||||||
Sbjct: 36329 gccatggcgatcctctcggcgctcgggaccgaggtgttcatccccgtc 36376
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>dbj|AK066933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091F19, full
           insert sequence
          Length = 2738

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 98  gccatggcgatcctcggggagctcgggacggagatcctcatccccgtc 145
           |||||||||||||||  || ||||||||| ||| |  |||||||||||
Sbjct: 107 gccatggcgatcctctcggcgctcgggaccgaggtgttcatccccgtc 154
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>emb|X67030.1|SPRPS13G S.pombe rps13 gene for ribosomal protein S13
          Length = 983

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 gatcctcggggagctcggga 125
           ||||||||||||||||||||
Sbjct: 552 gatcctcggggagctcggga 533
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>emb|AL928581.8| Mouse DNA sequence from clone RP23-318H20 on chromosome 2, complete
             sequence
          Length = 178735

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 27    cccccctcatcccaccccgcccgc 50
             |||||| |||||||||||||||||
Sbjct: 81012 ccccccccatcccaccccgcccgc 80989
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>dbj|AB012766.1| Oryza sativa gene for ovp2, complete cds
          Length = 5985

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                            
Query: 98   gccatggcgatcctcggggagctcgggacggagatcctcatccccgtc 145
            |||||||||||||||  || ||||||||| ||| |  |||||||||||
Sbjct: 1330 gccatggcgatcctctcggcgctcgggaccgaggtgttcatccccgtc 1377
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 36       tcccaccccgcccgccgccg 55
                ||||||||||||||||||||
Sbjct: 12496857 tcccaccccgcccgccgccg 12496838
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>dbj|D45384.1| Oryza sativa mRNA for vacuolar H+-pyrophosphatase, complete cds
          Length = 2710

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 98  gccatggcgatcctcggggagctcgggacggagatcctcatccccgtc 145
           |||||||||||||||  || ||||||||| ||| |  |||||||||||
Sbjct: 92  gccatggcgatcctctcggcgctcgggaccgaggtgttcatccccgtc 139
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 100     catggcgatcctcggggagctcg 122
               ||||||||||||||| |||||||
Sbjct: 2174932 catggcgatcctcggcgagctcg 2174954
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>gb|AC135918.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0115F21, complete sequence
          Length = 128493

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 35    atcccaccccgcccgccgc 53
             |||||||||||||||||||
Sbjct: 85397 atcccaccccgcccgccgc 85415
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>gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, complete sequence
          Length = 355714

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 3      agagagagcgagagacccgtccg 25
              |||||||| ||||||||||||||
Sbjct: 228429 agagagagagagagacccgtccg 228451
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 37      cccaccccgcccgccgccg 55
               |||||||||||||||||||
Sbjct: 2318393 cccaccccgcccgccgccg 2318411



 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 41     ccccgcccgccgccgtccg 59
              |||||||||||||||||||
Sbjct: 323518 ccccgcccgccgccgtccg 323500
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 37     cccaccccgcccgccgccgtccg 59
              |||||| ||||||||||||||||
Sbjct: 261668 cccaccacgcccgccgccgtccg 261646
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 37      cccaccccgcccgccgccg 55
               |||||||||||||||||||
Sbjct: 1185464 cccaccccgcccgccgccg 1185446



 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 41      ccccgcccgccgccgtccg 59
               |||||||||||||||||||
Sbjct: 1054539 ccccgcccgccgccgtccg 1054521
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>ref|XM_387224.1| Gibberella zeae PH-1 chromosome 4 RS13_XENLA 40S RIBOSOMAL PROTEIN
           S13 (FG07048.1) partial mRNA
          Length = 456

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 106 gatcctcggggagctcggg 124
           |||||||||||||||||||
Sbjct: 262 gatcctcggggagctcggg 244
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>ref|XM_798851.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053509855.20) partial mRNA
          Length = 1617

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 132  tcctcatccccgtctgcgg 150
            |||||||||||||||||||
Sbjct: 1302 tcctcatccccgtctgcgg 1320
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>gb|AC129020.4| Mus musculus BAC clone RP23-234A5 from chromosome 16, complete sequence
          Length = 192668

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 82    gcctgccagcctgacagccatgg 104
             ||||||||||||| |||||||||
Sbjct: 49891 gcctgccagcctgccagccatgg 49913
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>ref|XM_803328.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053510513.30) partial mRNA
          Length = 1617

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 132  tcctcatccccgtctgcgg 150
            |||||||||||||||||||
Sbjct: 1302 tcctcatccccgtctgcgg 1320
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 100     catggcgatcctcggggagctcg 122
               ||||||||||||||| |||||||
Sbjct: 4245255 catggcgatcctcggcgagctcg 4245233
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>gb|AC073585.8| Homo sapiens chromosome 10 clone RP11-564D11, complete sequence
          Length = 197295

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 22     tccgtcccccctcatcccacccc 44
              ||||||||||||| |||||||||
Sbjct: 165577 tccgtcccccctcctcccacccc 165599
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>gb|AC015933.9| Homo sapiens chromosome 18, clone CTD-2023G8, complete sequence
          Length = 249021

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 26     tcccccctcatcccacccc 44
              |||||||||||||||||||
Sbjct: 120715 tcccccctcatcccacccc 120697
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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 155   atcggcatcgtcttcgccg 173
             |||||||||||||||||||
Sbjct: 75382 atcggcatcgtcttcgccg 75400
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>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 155    atcggcatcgtcttcgccg 173
              |||||||||||||||||||
Sbjct: 347195 atcggcatcgtcttcgccg 347213
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>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12
          Length = 349346

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 155    atcggcatcgtcttcgccg 173
              |||||||||||||||||||
Sbjct: 326805 atcggcatcgtcttcgccg 326787
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>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16
          Length = 349737

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 100    catggcgatcctcggggagctcg 122
              ||||||||||||||| |||||||
Sbjct: 226701 catggcgatcctcggcgagctcg 226723
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 37      cccaccccgcccgccgccg 55
               |||||||||||||||||||
Sbjct: 1066948 cccaccccgcccgccgccg 1066930



 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 41     ccccgcccgccgccgtccg 59
              |||||||||||||||||||
Sbjct: 935539 ccccgcccgccgccgtccg 935521
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>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29
          Length = 303550

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 41     ccccgcccgccgccgtccg 59
              |||||||||||||||||||
Sbjct: 211783 ccccgcccgccgccgtccg 211765
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>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29
          Length = 295150

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 40     accccgcccgccgccgtcc 58
              |||||||||||||||||||
Sbjct: 171232 accccgcccgccgccgtcc 171250
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>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 153   tcatcggcatcgtcttcgc 171
             |||||||||||||||||||
Sbjct: 27312 tcatcggcatcgtcttcgc 27330
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>emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; segment 2/2
          Length = 178073

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 41     ccccgcccgccgccgtccg 59
              |||||||||||||||||||
Sbjct: 164098 ccccgcccgccgccgtccg 164116
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>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2
          Length = 178000

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 41    ccccgcccgccgccgtccg 59
             |||||||||||||||||||
Sbjct: 13976 ccccgcccgccgccgtccg 13958
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>dbj|AB226110.1| Aspergillus oryzae cDNA, contig sequence: AoEST2967
          Length = 1313

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 106 gatcctcggggagctcggg 124
           |||||||||||||||||||
Sbjct: 628 gatcctcggggagctcggg 610
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 100     catggcgatcctcggggagctcg 122
               |||| ||||||||||||||||||
Sbjct: 1786427 catgtcgatcctcggggagctcg 1786449
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 106    gatcctcggggagctcggg 124
              |||||||||||||||||||
Sbjct: 698760 gatcctcggggagctcggg 698742
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>gb|AC098865.2| Homo sapiens BAC clone RP11-374O3 from 4, complete sequence
          Length = 54348

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    tcccccctcatcccacccc 44
             |||||||||||||||||||
Sbjct: 52877 tcccccctcatcccacccc 52859
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>gb|AC092629.2| Homo sapiens BAC clone RP11-280J8 from 4, complete sequence
          Length = 148673

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 26  tcccccctcatcccacccc 44
           |||||||||||||||||||
Sbjct: 529 tcccccctcatcccacccc 511
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>gb|AC048362.14| Mus musculus, clone RP23-105E2, complete sequence
          Length = 209211

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 22    tccgtcccccctcatcccacccc 44
             |||||||||||||| ||||||||
Sbjct: 10596 tccgtcccccctcaccccacccc 10618
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 100     catggcgatcctcggggagctcg 122
               ||||||||||||||| |||||||
Sbjct: 4639445 catggcgatcctcggcgagctcg 4639423
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>dbj|AK075611.1| Mus musculus adult male brain cDNA, RIKEN full-length enriched
            library, clone:0710008A09 product:SWI/SNF related, matrix
            associated, actin dependent regulator of chromatin,
            subfamily d, member 1, full insert sequence
          Length = 2476

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 25   gtcccccctcatcccaccccgcc 47
            ||||||||||| |||||||||||
Sbjct: 1120 gtcccccctcaccccaccccgcc 1142
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>gb|AC154312.2| Mus musculus BAC clone RP23-354D20 from chromosome 16, complete
             sequence
          Length = 197884

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    tcccccctcatcccacccc 44
             |||||||||||||||||||
Sbjct: 63385 tcccccctcatcccacccc 63367
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 40      accccgcccgccgccgtcc 58
               |||||||||||||||||||
Sbjct: 4053628 accccgcccgccgccgtcc 4053610
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 148    cggggtcatcggcatcgtcttcg 170
              ||||| |||||||||||||||||
Sbjct: 802446 cggggccatcggcatcgtcttcg 802468
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>gb|AC009298.3| Homo sapiens BAC clone RP11-17I6 from 2, complete sequence
          Length = 165242

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 36     tcccaccccgcccgccgcc 54
              |||||||||||||||||||
Sbjct: 103618 tcccaccccgcccgccgcc 103600
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 37      cccaccccgcccgccgccg 55
               |||||||||||||||||||
Sbjct: 5806820 cccaccccgcccgccgccg 5806802



 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 44      cgcccgccgccgtccggtccgtc 66
               ||||||| |||||||||||||||
Sbjct: 2100551 cgcccgctgccgtccggtccgtc 2100529
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>emb|AJ340490.1|HSA340490 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-WH19R
          Length = 702

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 41  ccccgcccgccgccgtccg 59
           |||||||||||||||||||
Sbjct: 326 ccccgcccgccgccgtccg 344
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>gb|AC131727.4| Mus musculus BAC clone RP23-120E19 from 14, complete sequence
          Length = 208338

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     cagagagagcgagagaccc 20
             |||||||||||||||||||
Sbjct: 85616 cagagagagcgagagaccc 85634
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>gb|AC151833.3| Mus musculus BAC clone RP23-374P15 from 14, complete sequence
          Length = 197918

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      cagagagagcgagagaccc 20
              |||||||||||||||||||
Sbjct: 163909 cagagagagcgagagaccc 163927
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 47      ccgccgccgtccggtccgt 65
               |||||||||||||||||||
Sbjct: 1713058 ccgccgccgtccggtccgt 1713040
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>gb|AC166329.3| Pan troglodytes BAC clone CH251-143I6 from chromosome unknown, complete
             sequence
          Length = 173896

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    tcccccctcatcccacccc 44
             |||||||||||||||||||
Sbjct: 46723 tcccccctcatcccacccc 46705
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 148     cggggtcatcggcatcgtcttcg 170
               ||||| |||||||||||||||||
Sbjct: 2406121 cgggggcatcggcatcgtcttcg 2406099
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>dbj|AP003123.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-402K1, complete
             sequence
          Length = 187735

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 26    tcccccctcatcccacccc 44
             |||||||||||||||||||
Sbjct: 86202 tcccccctcatcccacccc 86220


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 983,286
Number of Sequences: 3902068
Number of extensions: 983286
Number of successful extensions: 92342
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89899
Number of HSP's gapped (non-prelim): 2443
length of query: 173
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 151
effective length of database: 17,147,199,772
effective search space: 2589227165572
effective search space used: 2589227165572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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