ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl25h05 |
|---|---|
| Clone Library Name | barley_pub |
>RPP13_ARATH (Q9M667) Disease resistance protein RPP13 (Resistance to| Peronospora parasitica protein 13) Length = 835 Score = 40.4 bits (93), Expect = 0.001 Identities = 24/99 (24%), Positives = 52/99 (52%) Frame = +2 Query: 38 SFVEWMVPKLFDFLDKNHELRKNLERDINFIKYEFGMISAVIQDEQNSRHGRGEEVHKEW 217 + E++V K+ ++L + + ++ D+ +K E I ++D + R +EV KEW Sbjct: 4 AITEFVVGKIGNYLIEEASMFMAVKEDLEELKTELTCIHGYLKDVEARE--REDEVSKEW 61 Query: 218 IRMVREVAHAIEDCIDRFMHRVRMAKTGAGWLRRAVHRV 334 ++V + A+ +ED +D + ++ G LRR +++ Sbjct: 62 SKLVLDFAYDVEDVLDTYHLKLEERSQRRG-LRRLTNKI 99
>R13L3_ARATH (Q9STE7) Putative disease resistance RPP13-like protein 3| Length = 847 Score = 37.4 bits (85), Expect = 0.009 Identities = 20/67 (29%), Positives = 35/67 (52%) Frame = +2 Query: 116 DINFIKYEFGMISAVIQDEQNSRHGRGEEVHKEWIRMVREVAHAIEDCIDRFMHRVRMAK 295 D+ +K E I ++D + R +EV KEW ++V ++A+ IED +D + ++ Sbjct: 30 DLEELKTELTCIHGYLKDVEARE--REDEVSKEWTKLVLDIAYDIEDVLDTYFLKLEERS 87 Query: 296 TGAGWLR 316 G LR Sbjct: 88 LRRGLLR 94
>R13L2_ARATH (Q9STE5) Putative disease resistance RPP13-like protein 2| Length = 847 Score = 37.4 bits (85), Expect = 0.009 Identities = 20/93 (21%), Positives = 49/93 (52%) Frame = +2 Query: 38 SFVEWMVPKLFDFLDKNHELRKNLERDINFIKYEFGMISAVIQDEQNSRHGRGEEVHKEW 217 + E++V K+ ++L + + ++ D+ +K E I +++ + + +EV KEW Sbjct: 4 AITEFVVGKIDNYLIEEAPMLIGVKDDLEELKTELTCIQVYLKNVEVC--DKEDEVSKEW 61 Query: 218 IRMVREVAHAIEDCIDRFMHRVRMAKTGAGWLR 316 ++V ++A+ +ED +D + ++ G +R Sbjct: 62 TKLVLDIAYDVEDVLDTYFLKLEKRLHRLGLMR 94
>PCP_ERWCT (Q6D7H1) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)| (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I) (PGP-I) (Pyrase) Length = 215 Score = 33.1 bits (74), Expect = 0.17 Identities = 17/58 (29%), Positives = 28/58 (48%) Frame = -3 Query: 283 HSVHEAVDAVFNGVRHLTYHPDPLLMHLFTPSMATVLLILDDGRNHAKLILDEIDVTL 110 H +H+ D V G H+ Y P+ H PSM T L+ +L++ ++DV + Sbjct: 152 HQLHQQGDVVRGGFVHIPYSPEQAARHPGEPSMPTPLVTAALEVMIKQLLVQQVDVAI 209
>Y492_PASMU (Q9CNE0) Hypothetical protein PM0492| Length = 104 Score = 33.1 bits (74), Expect = 0.17 Identities = 15/61 (24%), Positives = 31/61 (50%) Frame = -3 Query: 262 DAVFNGVRHLTYHPDPLLMHLFTPSMATVLLILDDGRNHAKLILDEIDVTLQVLPKLVIF 83 D N +R + YH + + L+ ++ ++LL D+ N L+ + + L + P+ +F Sbjct: 45 DRTINSLRIIIYHGNKICFDLYKENLKSILL--DENGNFISFFLECMQIELSIYPEFSVF 102 Query: 82 I 80 I Sbjct: 103 I 103
>RPOC_CLOPE (Q93R87) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1178 Score = 32.0 bits (71), Expect = 0.38 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Frame = +2 Query: 83 KNHELRKNLERDINFIK--YEFGMISAVIQDEQNSRHGRGEEVHKEWIRMVREVAHAIED 256 K +EL K + ++ I+ Y G+IS +DE R E V ++W EVA + + Sbjct: 645 KKYELLKEADETVDKIEKMYRRGLIS---EDE------RYERVIEKWTETTEEVADTLMN 695 Query: 257 CIDRFMHRVRMAKTGA 304 +D+F MA +GA Sbjct: 696 SLDKFNPIFMMADSGA 711
>YCF2_ANTFO (Q859W7) Protein ycf2| Length = 2392 Score = 31.2 bits (69), Expect = 0.65 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +2 Query: 44 VEWMVPKLFDFLDKNHELRKNLERDINFIK 133 + W K+F FLDKNHE +++ + F + Sbjct: 325 LHWWKKKIFQFLDKNHESDQSIAKSFTFFQ 354
>R1A6_SOLDE (Q6L438) Putative late blight resistance protein homolog R1A-6| Length = 1247 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/104 (16%), Positives = 47/104 (45%) Frame = +2 Query: 41 FVEWMVPKLFDFLDKNHELRKNLERDINFIKYEFGMISAVIQDEQNSRHGRGEEVHKEWI 220 +V++++ L DF D + L+ + I+ EF + ++ H + + ++++ Sbjct: 391 YVDFLLKNLNDFQDCYSDSLAFLKNQLQVIQTEFESLQPFLKVVAEEPHNKLKTLNEDCA 450 Query: 221 RMVREVAHAIEDCIDRFMHRVRMAKTGAGWLRRAVHRVKTVKAR 352 + A+ +E +D +++ + WL + + +KA+ Sbjct: 451 TQIIRKAYEVEYVVDACINKEALHWCLERWLLDIIEEITCIKAK 494
>R1A10_SOLDE (Q60CZ8) Putative late blight resistance protein homolog R1A-10| Length = 1306 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/104 (16%), Positives = 47/104 (45%) Frame = +2 Query: 41 FVEWMVPKLFDFLDKNHELRKNLERDINFIKYEFGMISAVIQDEQNSRHGRGEEVHKEWI 220 +V++++ L DF D + L+ + I+ EF + ++ H + + ++++ Sbjct: 391 YVDFLLKNLNDFQDCYSDSLAFLKNQLQVIQTEFESLQPFLKVVAEEPHNKLKTLNEDCA 450 Query: 221 RMVREVAHAIEDCIDRFMHRVRMAKTGAGWLRRAVHRVKTVKAR 352 + A+ +E +D +++ + WL + + +KA+ Sbjct: 451 TQIIRKAYEVEYVVDACINKEALHWCLERWLLDIIEEITCIKAK 494
>VNS1_BTV20 (P32931) Nonstructural protein NS1| Length = 552 Score = 29.6 bits (65), Expect = 1.9 Identities = 10/30 (33%), Positives = 19/30 (63%) Frame = +2 Query: 47 EWMVPKLFDFLDKNHELRKNLERDINFIKY 136 +W+ P LF ++H++++ +ER IN Y Sbjct: 178 DWIDPNLFGVRGQHHQIKREVERQINTCPY 207
>VNS1_BTV1A (P33471) Nonstructural protein NS1| Length = 552 Score = 29.6 bits (65), Expect = 1.9 Identities = 10/30 (33%), Positives = 19/30 (63%) Frame = +2 Query: 47 EWMVPKLFDFLDKNHELRKNLERDINFIKY 136 +W+ P LF ++H++++ +ER IN Y Sbjct: 178 DWIDPNLFGVRGQHHQIKREVERQINTCPY 207
>SNF6_YEAST (P18888) Transcription regulatory protein SNF6 (SWI/SNF complex| component SNF6) Length = 332 Score = 29.6 bits (65), Expect = 1.9 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = -3 Query: 280 SVHEAVDAVFNGVRHLTYHPDPLLMHLFTPSM 185 S + +DAVF HL Y PD +++H P++ Sbjct: 182 STKDMIDAVFEQDSHLRYQPDGVVVHRDDPAL 213
>QUEA_PROMA (Q7VDH4) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 370 Score = 28.9 bits (63), Expect = 3.2 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +2 Query: 203 VHKEWIRMVREVAHAIEDCIDR 268 +H EW+ + EV AI++C DR Sbjct: 242 LHSEWVEVKEEVVSAIKECRDR 263
>SMUG1_BOVIN (Q59I47) Single-strand selective monofunctional uracil DNA| glycosylase (EC 3.2.2.-) Length = 272 Score = 28.9 bits (63), Expect = 3.2 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Frame = -3 Query: 331 PVDSPSE--PPGPCLGHPHSVHEAVDAVFNGV-RHLTYHPDPLLMHLFTPSMATVLLILD 161 PV +P + P P LG E A F G R+L P+ H F ++ +LL+ Sbjct: 115 PVRTPPQEHPKRPVLGLECPQSEVSGARFWGFFRNLCGQPEVFFRHCFVHNLCPLLLLAP 174 Query: 160 DGRN 149 GRN Sbjct: 175 SGRN 178
>LSTP_STAST (P10548) Lysostaphin precursor (EC 3.4.24.75) (Glycyl-glycine| endopeptidase) Length = 480 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/44 (31%), Positives = 20/44 (45%) Frame = +3 Query: 192 GVKRCIRSGSGWYVRWRTPLKTASTASCTE*GWPRQGPGGSDGL 323 G+ I G +++ TP+K S+ E GW G G GL Sbjct: 260 GINGGIHYGVDFFMNIGTPVKAISSGKIVEAGWSNYGGGNQIGL 303
>RPOC_CLOAB (Q97EH0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1182 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = +2 Query: 191 RGEEVHKEWIRMVREVAHAIEDCIDRFMHRVRMAKTGA 304 R E V W + +VA A+ D +DRF MA +GA Sbjct: 673 RYERVISTWTKTTEKVADALMDNLDRFNPIFMMADSGA 710
>RPM1_ARATH (Q39214) Disease resistance protein RPM1 (Resistance to Pseudomonas| syringae protein 3) Length = 926 Score = 28.5 bits (62), Expect = 4.2 Identities = 22/110 (20%), Positives = 55/110 (50%), Gaps = 6/110 (5%) Frame = +2 Query: 44 VEWMVPKLFDFLDKNHELRKNLERDINFIKYEFGMISAVIQDEQNSRHGRG------EEV 205 V++ + ++ L+ L + +I+ +K E ++ + ++D +HG ++ Sbjct: 6 VDFGIGRILSVLENETLLLSGVHGEIDKMKKELLIMKSFLEDTH--KHGGNGSTTTTTQL 63 Query: 206 HKEWIRMVREVAHAIEDCIDRFMHRVRMAKTGAGWLRRAVHRVKTVKARN 355 + ++ R++A+ IED +D F + + ++ A + RA H + + AR+ Sbjct: 64 FQTFVANTRDLAYQIEDILDEFGYHIHGYRSCAK-IWRAFHFPRYMWARH 112
>Y1262_METJA (Q58658) Hypothetical protein MJ1262| Length = 389 Score = 28.1 bits (61), Expect = 5.5 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = +2 Query: 119 INFIKYEFGMISAVIQDEQNSRHGRGEEVHKEWIRMVREVAHA--IEDCIDRFM 274 I+F Y G +S + HGRGE+V K + ++ H IED I R+M Sbjct: 83 ISFSFYGVGAVSFI--------HGRGEKVKKAKEEYIFDITHPLDIEDRIRRYM 128
>SPI1_HUMAN (P17947) Transcription factor PU.1 (31 kDa transforming protein)| Length = 270 Score = 28.1 bits (61), Expect = 5.5 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = -3 Query: 346 LHRLHPVDSPSEPPGPCLGH 287 L ++H +D+P PP P LGH Sbjct: 90 LEQMHVLDTPMVPPHPSLGH 109
>QUEA_PSEPK (Q88PL8) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 349 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/53 (30%), Positives = 24/53 (45%) Frame = +2 Query: 101 KNLERDINFIKYEFGMISAVIQDEQNSRHGRGEEVHKEWIRMVREVAHAIEDC 259 K +ER + G V D+ H +HKEW+ + ++V AIE C Sbjct: 192 KGVERAFVTLHVGAGTFQPVRVDKIEDHH-----MHKEWLEVGQDVVDAIEAC 239
>SIF1_DROME (P91621) Protein still life, isoform SIF type 1| Length = 2072 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -3 Query: 334 HPVDSPSEPPGPCLGHPHSVHEAVD 260 HP P EPP P + PH H + D Sbjct: 1949 HPHPHPREPPPPPIRQPHLHHHSSD 1973
>ADCA_STRR6 (Q8CWN2) Zinc-binding lipoprotein adcA precursor| Length = 501 Score = 27.7 bits (60), Expect = 7.2 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 6/71 (8%) Frame = +2 Query: 44 VEWMVPKLFDFLDKNHELRKNLERDINFIKYEFGMISAVIQDEQNSRHGRGEEVHKE--- 214 +E VPKL D LDK + + IK M+ +E+ H GEE H Sbjct: 88 METWVPKLLDTLDK---------KKVKTIKATGDMLLLPGGEEEEGDHDHGEEGHHHEFD 138 Query: 215 ---WIRMVREV 238 W+ VR + Sbjct: 139 PHVWLSPVRAI 149
>ADCA_STRPN (O05703) Zinc-binding lipoprotein adcA precursor| Length = 501 Score = 27.7 bits (60), Expect = 7.2 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 6/71 (8%) Frame = +2 Query: 44 VEWMVPKLFDFLDKNHELRKNLERDINFIKYEFGMISAVIQDEQNSRHGRGEEVHKE--- 214 +E VPKL D LDK + + IK M+ +E+ H GEE H Sbjct: 88 METWVPKLLDTLDK---------KKVKTIKATGDMLLLPGGEEEEGDHDHGEEGHHHEFD 138 Query: 215 ---WIRMVREV 238 W+ VR + Sbjct: 139 PHVWLSPVRAI 149
>SIF2_DROME (P91620) Protein still life, isoforms C/SIF type 2| Length = 2061 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -3 Query: 334 HPVDSPSEPPGPCLGHPHSVHEAVD 260 HP P EPP P + PH H + D Sbjct: 1938 HPHPHPREPPPPPIRQPHLHHHSSD 1962
>SNX41_KLULA (Q6CWX3) Sorting nexin-41| Length = 575 Score = 27.7 bits (60), Expect = 7.2 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Frame = +2 Query: 56 VPKLFDFLDKNHELRKNLERDINFIKYEFGMISAVIQDEQNSRHGRGEEVHKEWIRMVRE 235 V KL L+K +E K +E+D+ + + NS + + H++W + RE Sbjct: 500 VNKLEKELEKLNECFKLIEKDLQQVN----------ESMDNSLNNLEKYFHEKWFLIFRE 549 Query: 236 VAHAI----EDC 259 +AH I +DC Sbjct: 550 LAHNITSWLKDC 561
>ROR1_MOUSE (Q9Z139) Tyrosine-protein kinase transmembrane receptor ROR1| precursor (EC 2.7.10.1) (Neurotrophic tyrosine kinase, receptor-related 1) (mROR1) Length = 937 Score = 27.7 bits (60), Expect = 7.2 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = +1 Query: 145 HDFCRHPG*AKQSPW 189 H +CR+PG K++PW Sbjct: 359 HSYCRNPGNQKEAPW 373
>ROR1_HUMAN (Q01973) Tyrosine-protein kinase transmembrane receptor ROR1| precursor (EC 2.7.10.1) (Neurotrophic tyrosine kinase, receptor-related 1) Length = 937 Score = 27.7 bits (60), Expect = 7.2 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = +1 Query: 145 HDFCRHPG*AKQSPW 189 H +CR+PG K++PW Sbjct: 359 HSYCRNPGNQKEAPW 373
>INP5E_MOUSE (Q9JII1) 72 kDa inositol polyphosphate 5-phosphatase (EC 3.1.3.36)| (Phosphatidylinositol-4,5-bisphosphate 5-phosphatase) (Phosphatidylinositol polyphosphate 5-phosphatase type IV) Length = 647 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/29 (44%), Positives = 14/29 (48%) Frame = -3 Query: 352 TGLHRLHPVDSPSEPPGPCLGHPHSVHEA 266 T L R H PS P P G HS+H A Sbjct: 229 TRLVRAHSNLGPSRPRSPLAGDDHSIHSA 257
>LSTP_STASI (P10547) Lysostaphin precursor (EC 3.4.24.75) (Glycyl-glycine| endopeptidase) Length = 493 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/44 (29%), Positives = 20/44 (45%) Frame = +3 Query: 192 GVKRCIRSGSGWYVRWRTPLKTASTASCTE*GWPRQGPGGSDGL 323 G+ + G +++ TP+K S+ E GW G G GL Sbjct: 273 GINGGMHYGVDFFMNIGTPVKAISSGKIVEAGWSNYGGGNQIGL 316
>PIST_ARATH (P48007) Floral homeotic protein PISTILLATA (Transcription factor| PI) Length = 208 Score = 27.7 bits (60), Expect = 7.2 Identities = 19/63 (30%), Positives = 31/63 (49%) Frame = +2 Query: 80 DKNHELRKNLERDINFIKYEFGMISAVIQDEQNSRHGRGEEVHKEWIRMVREVAHAIEDC 259 D HE NL +I+ IK E + + RH +GE++ ++ + V HAIE Sbjct: 81 DAKHE---NLSNEIDRIKKENDSLQLEL------RHLKGEDIQSLNLKNLMAVEHAIEHG 131 Query: 260 IDR 268 +D+ Sbjct: 132 LDK 134
>RECR_METCA (Q609A9) Recombination protein recR| Length = 198 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%) Frame = -1 Query: 285 LTRCMKRSMQSSMACATSRTILIHSLCTSSPLPWR---LFCSSWMTAEIM 145 L+ ++++++ CA RT+ HSLC P R L C AE++ Sbjct: 43 LSEALRQALEKVGLCAQCRTLTEHSLCEYCASPGRDRSLLCIVESPAEVL 92
>MTHR_ORYSA (Q75HE6) Probable methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 594 Score = 27.3 bits (59), Expect = 9.4 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Frame = +2 Query: 161 IQDEQNSR-HGRGEEVHKEWIRMVREVAHAIEDCIDRFMHRVRMAKTGAGW 310 + D Q +R GRG+++ +EW V+ ++ED +RFM+ + T + W Sbjct: 365 LTDYQFTRPRGRGKKLQEEWAVPVK----SVEDINERFMNFCQGKLTSSPW 411
>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)| Length = 815 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -3 Query: 337 LHPVDSPSEPPGPCLGHPHSVH 272 +HP P P GP +GHPH H Sbjct: 158 MHPHMHPHHPGGP-MGHPHGPH 178
>ADA11_MOUSE (Q9R1V4) ADAM 11 precursor (A disintegrin and metalloproteinase| domain 11) (Metalloproteinase-like, disintegrin-like, and cysteine-rich protein) (MDC) Length = 773 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -2 Query: 302 PLSWPSSLGA*SGRCSLQWRAPPHVPS*STP 210 PL P LGA R +L WR+ HV S +P Sbjct: 16 PLLPPPGLGALGPRGALHWRSSAHVGSPESP 46
>MUTS2_THETN (Q8R9D0) MutS2 protein| Length = 790 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/98 (18%), Positives = 44/98 (44%), Gaps = 3/98 (3%) Frame = +2 Query: 71 DFLDKNHELRKNLE---RDINFIKYEFGMISAVIQDEQNSRHGRGEEVHKEWIRMVREVA 241 D + E RK+LE +++ +K E ++ ++ E+ + +++ KE RE+ Sbjct: 520 DVIKDVEEKRKDLENAYQEVERLKKEVEVLKEELEKEKRKLESQKDKILKEAKEKAREII 579 Query: 242 HAIEDCIDRFMHRVRMAKTGAGWLRRAVHRVKTVKARN 355 + + + R++ A+ RA+ ++ +N Sbjct: 580 KEAKQTAEEVIKRIKEAEEKEKNKDRAIQEIREKIKKN 617
>MEGF8_MOUSE (P60882) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2330 Score = 27.3 bits (59), Expect = 9.4 Identities = 26/77 (33%), Positives = 30/77 (38%), Gaps = 10/77 (12%) Frame = -3 Query: 310 PPGPCLGHPHSVHEAVDA--VFNGVR-HLTY-HPDPLLMHLFTPSMATVLLILDDGRN-- 149 PP GH HEA D+ VF G R H+ P P L L P LL G Sbjct: 1209 PPTGLYGHSAVYHEATDSLYVFGGFRFHVELAAPSPELYSLHCPDRTWSLLAPSQGAKPR 1268 Query: 148 ----HAKLILDEIDVTL 110 HA +L + V L Sbjct: 1269 PRLFHASALLGDTMVVL 1285
>HIS3_METAC (Q8TS96) Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (PRA-CH)| Length = 120 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/21 (47%), Positives = 18/21 (85%) Frame = +2 Query: 116 DINFIKYEFGMISAVIQDEQN 178 D++ +KYE G+I AV+QD+++ Sbjct: 3 DLDTLKYENGLILAVVQDQKS 23 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,966,450 Number of Sequences: 219361 Number of extensions: 1132088 Number of successful extensions: 3730 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 3610 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3729 length of database: 80,573,946 effective HSP length: 94 effective length of database: 59,954,012 effective search space used: 1438896288 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
