ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl25h05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC137113.4| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.077
5dbj|AP004806.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.077
6dbj|AK072773.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.077
7gb|CP000264.1| Jannaschia sp. CCS1, complete genome 44 0.30
8gb|AE005677.1| Caulobacter crescentus CB15 section 3 of 359 of t... 42 1.2
9gb|AC135644.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
10emb|Z33389.1|HIDCGC6 H.influenzae (RM128) type d capsular DNA, 1... 42 1.2
11dbj|AK066559.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
12ref|XM_464338.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.7
13gb|AC120885.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.7
14gb|AC144760.27| Medicago truncatula clone mth2-8p15, complete se... 40 4.7
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
16gb|AC009410.3| Homo sapiens BAC clone RP11-335M11 from 2, comple... 40 4.7
17dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 4.7
18dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7 
>gb|AC137113.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0006N14, complete sequence
          Length = 155730

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 254   gactgcatcgaccgcttcatgcaccg 279
             ||||||||||||||||||||||||||
Sbjct: 68923 gactgcatcgaccgcttcatgcaccg 68898
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 254      gactgcatcgaccgcttcatgcaccg 279
                ||||||||||||||||||||||||||
Sbjct: 15213290 gactgcatcgaccgcttcatgcaccg 15213265



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 239      gcgcacgccattgaagactgcatcgaccgcttcatgcaccg 279
                ||||||| ||| || |||||| ||||||||||| |||||||
Sbjct: 26917473 gcgcacgacatcgaggactgcgtcgaccgcttcttgcaccg 26917513



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 117      acatcaatttcatcaagtat 136
                ||||||||||||||||||||
Sbjct: 23076068 acatcaatttcatcaagtat 23076087
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 254      gactgcatcgaccgcttcatgcaccg 279
                ||||||||||||||||||||||||||
Sbjct: 15294789 gactgcatcgaccgcttcatgcaccg 15294764



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 239      gcgcacgccattgaagactgcatcgaccgcttcatgcaccg 279
                ||||||| ||| || |||||| ||||||||||| |||||||
Sbjct: 27244526 gcgcacgacatcgaggactgcgtcgaccgcttcttgcaccg 27244566



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 117      acatcaatttcatcaagtat 136
                ||||||||||||||||||||
Sbjct: 23385978 acatcaatttcatcaagtat 23385997
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 17      gtggcgacggcggcggccacctc 39
               |||||||||||||||||||||||
Sbjct: 2587747 gtggcgacggcggcggccacctc 2587769
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>dbj|AP004806.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0710H01
          Length = 187107

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 17    gtggcgacggcggcggccacctc 39
             |||||||||||||||||||||||
Sbjct: 43088 gtggcgacggcggcggccacctc 43110
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>dbj|AK072773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138L23, full
           insert sequence
          Length = 970

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 17  gtggcgacggcggcggccacctc 39
           |||||||||||||||||||||||
Sbjct: 144 gtggcgacggcggcggccacctc 122
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 14     gttgtggcgacggcggcggcca 35
              ||||||||||||||||||||||
Sbjct: 850227 gttgtggcgacggcggcggcca 850248
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>gb|AE005677.1| Caulobacter crescentus CB15 section 3 of 359 of the complete genome
          Length = 14299

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 329   cgggtgaagacggtgaaggcc 349
             |||||||||||||||||||||
Sbjct: 13217 cgggtgaagacggtgaaggcc 13237
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>gb|AC135644.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0085H07, complete sequence
          Length = 133291

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 239   gcgcacgccattgaagactgcatcgaccgcttcatgcaccg 279
             ||||||| ||| || |||||| ||||||||||| |||||||
Sbjct: 28433 gcgcacgacatcgaggactgcgtcgaccgcttcttgcaccg 28393
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>emb|Z33389.1|HIDCGC6 H.influenzae (RM128) type d capsular DNA, 155bp
          Length = 155

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 70 tgatttcttagataaaaatca 90
          |||||||||||||||||||||
Sbjct: 79 tgatttcttagataaaaatca 99
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>dbj|AK066559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074H11, full
           insert sequence
          Length = 3799

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 239 gcgcacgccattgaagactgcatcgaccgcttcatgcaccg 279
           ||||||| ||| || |||||| ||||||||||| |||||||
Sbjct: 302 gcgcacgacatcgaggactgcgtcgaccgcttcttgcaccg 342
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>ref|XM_464338.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1047

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 10  ggaggttgtggcgacggcggcggc 33
           ||||||||||||| ||||||||||
Sbjct: 159 ggaggttgtggcggcggcggcggc 182
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>gb|AC120885.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0042J05, complete sequence
          Length = 150295

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   acatcaatttcatcaagtat 136
             ||||||||||||||||||||
Sbjct: 92071 acatcaatttcatcaagtat 92090
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>gb|AC144760.27| Medicago truncatula clone mth2-8p15, complete sequence
          Length = 108569

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    tttgatttcttagataaaaa 87
             ||||||||||||||||||||
Sbjct: 61291 tttgatttcttagataaaaa 61272
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 10      ggaggttgtggcgacggcggcggc 33
               ||||||||||||| ||||||||||
Sbjct: 4558997 ggaggttgtggcggcggcggcggc 4559020
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>gb|AC009410.3| Homo sapiens BAC clone RP11-335M11 from 2, complete sequence
          Length = 189812

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    ctttgatttcttagataaaa 86
             ||||||||||||||||||||
Sbjct: 23350 ctttgatttcttagataaaa 23369
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     ggcgacggcggcggccacct 38
              ||||||||||||||||||||
Sbjct: 458596 ggcgacggcggcggccacct 458615
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>dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1297_C09
          Length = 163378

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 10    ggaggttgtggcgacggcggcggc 33
             ||||||||||||| ||||||||||
Sbjct: 94376 ggaggttgtggcggcggcggcggc 94399


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,797,394
Number of Sequences: 3902068
Number of extensions: 2797394
Number of successful extensions: 72828
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72143
Number of HSP's gapped (non-prelim): 685
length of query: 357
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 335
effective length of database: 17,147,199,772
effective search space: 5744311923620
effective search space used: 5744311923620
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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