>PTMA_BRARE (Q6NV32) Prothymosin alpha|
          Length = 105

 Score = 36.2 bits (82), Expect = 0.040
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = +2

Query: 221 MAVANGGTSTDVVASDKKDNTKMEEAGKSKDXXXXXXXXXXXXXXSENDTEGSSHDDAKM 400
           MA     TS +V A D K+  ++EEA   KD               EN+ +    D A+ 
Sbjct: 1   MADTKVDTSKEVSAKDLKEKKQVEEAENGKDAPANGNAENEENGDQENEVDEEDDDVAEE 60

Query: 401 EEAQDAKEDD 430
           +E  D + DD
Sbjct: 61  DEEDDGEGDD 70

>HIW_DROME (Q9NB71) Ubiquitin ligase protein highwire (EC 6.3.2.-) (Protein|
            pam/highwire/rpm-1)
          Length = 5233

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 20/47 (42%), Positives = 25/47 (53%)
 Frame = -3

Query: 365  RFLRLYSVGWHWYSLLQHPCSCQPLPSWYYPSYQKQQRQWMFLHLPQ 225
            +F R YS+G  W SL QH     P P  ++P  Q  Q+Q M L L Q
Sbjct: 3889 KFHRSYSMGQGWASLAQHN---HPPP--HHPQQQHHQQQQMNLQLQQ 3930

>ATX7_MOUSE (Q8R4I1) Ataxin-7 (Spinocerebellar ataxia type 7 protein homolog)|
          Length = 867

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 274 LLIRSNNVSGCSSICHSHQLHYWCQVCPGHPGDPYCSS 161
           LL+ S++ S  SS   SH ++ + + C  H G PY S+
Sbjct: 692 LLVPSSSSSSSSSSSSSHSVNSFRKNCVAHSGTPYLST 729

>CYLC2_BOVIN (Q28092) Cylicin-2 (Cylicin II) (Multiple-band polypeptide II)|
          Length = 488

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 260 ASDKKDNTKMEEAGKSKDXXXXXXXXXXXXXXSENDTEGSSHDDAKMEEAQDAKED 427
           + DKKD  K +   + KD              ++ D +  +  DAK +  +DAK+D
Sbjct: 428 SKDKKDAKKKDSKKEKKDEKKPGEAESEPKDSAKKDAKKDAKKDAKKDAKKDAKKD 483

>HD2B_ARATH (Q56WH4) Histone deacetylase 2b (HD-tuins protein 2)|
          Length = 306

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 19/67 (28%), Positives = 26/67 (38%)
 Frame = +2

Query: 230 ANGGTSTDVVASDKKDNTKMEEAGKSKDXXXXXXXXXXXXXXSENDTEGSSHDDAKMEEA 409
           ANG     VV +D K   K  E   +++               E+D E  S +D   E+ 
Sbjct: 123 ANGNAGAAVVKADTKPKAKPAEVKPAEEKPESDEE-------DESDDEDESEEDDDSEKG 175

Query: 410 QDAKEDD 430
            D  EDD
Sbjct: 176 MDVDEDD 182

>LRP8_CHICK (Q98931) Low-density lipoprotein receptor-related protein 8|
           precursor (Apolipoprotein E receptor 2) (LR8B protein)
          Length = 917

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -1

Query: 262 SNNVSGCSSICHSHQLHYWCQVCPGHP--GDPYCSSCGKIVRPSA*SQI 122
           S N  GCS IC   ++ Y C+  PG+       C    +   P A SQI
Sbjct: 356 SLNNGGCSHICKDLKIGYECECPPGYKLLDKKTCGDIDECENPDACSQI 404

>ELT2_CAEEL (Q10655) Transcription factor elt-2|
          Length = 433

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
 Frame = -1

Query: 181 GDPYCSSCG------KIVRPSA*S-----QIRKKLEESGDSRGRVWSRVASRRVPPVAS 38
           GDP C++CG       I RP++       Q RK+  +SGDS     SR   R+    +S
Sbjct: 254 GDPVCNACGLYFKLHHIPRPTSMKKEGALQTRKRKSKSGDSSTPSTSRARERKFERASS 312

>FA53B_MOUSE (Q8BGR5) Protein FAM53B|
          Length = 422

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = -1

Query: 250 SGCSSICHSHQLH--YWCQVCPGHPGDPYCSSCG 155
           +G SS CH   LH  +  Q C G PG   C   G
Sbjct: 176 NGLSSPCHQSSLHHRFGGQPCQGAPGSAPCGQAG 209

>ARMX6_RAT (Q66HF0) Protein ARMCX6|
          Length = 301

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 124 FDFTHLAELFFRSWSNKGHPDDRGRP-GTSNGVDGCGKWRNIH 249
           FDFT +A    R WS  G  D+ G P GT +   G GK    H
Sbjct: 60  FDFTAMA----RPWSEDGEWDEPGAPGGTEDRRSGGGKANRAH 98

>SSPO_BOVIN (P98167) SCO-spondin (Fragment)|
          Length = 867

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -3

Query: 362 FLRLYSVGWHWYSLLQHPCSCQPLPSWYYPSYQKQQRQWMFLHLPQ 225
           +L++ S G HW+S        QP P  +  ++      WMF  + Q
Sbjct: 423 WLQVSSDGLHWHSYRDIQHGTQPAPQLFPKNWNGPSTVWMFARMVQ 468

>ITB2_MOUSE (P11835) Integrin beta-2 precursor (Cell surface adhesion|
           glycoproteins LFA-1/CR3/P150,95 beta-subunit)
           (Complement receptor C3 beta-subunit) (CD18 antigen)
          Length = 771

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
 Frame = -1

Query: 334 IGIRYCNILALASLFHLG--IILLIRSNNVSGCSSICHSHQLHYWCQ----VCPGHPGDP 173
           +G+R   +LALA LF LG  +        VS C     S     WCQ      PG P   
Sbjct: 2   LGLRPSLLLALAGLFFLGSAVSQECTKYKVSSCRDCIQSGPGCSWCQKLNFTGPGEPDSL 61

Query: 172 YCSSCGKIV 146
            C +  +++
Sbjct: 62  RCDTRAQLL 70

>ARMX6_MOUSE (Q8K3A6) Protein ARMCX6|
          Length = 301

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 124 FDFTHLAELFFRSWSNKGHPDDRGRP-GTSNGVDGCGKWRNIH 249
           FDFT +A    R WS  G  D+ G P GT +   G GK    H
Sbjct: 60  FDFTAMA----RPWSEDGDWDEPGAPGGTEDRRSGGGKANRAH 98

>OTC_LEPIN (Q8F2D1) Ornithine carbamoyltransferase (EC 2.1.3.3) (OTCase)|
          Length = 311

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 222 INSITGARSAPVIRVTLIAPAAEK 151
           +NS+ G  SA  IR+TL+ P AEK
Sbjct: 166 VNSLIGITSALGIRLTLVTPIAEK 189

>OTC_LEPIC (Q72T26) Ornithine carbamoyltransferase (EC 2.1.3.3) (OTCase)|
          Length = 311

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 222 INSITGARSAPVIRVTLIAPAAEK 151
           +NS+ G  SA  IR+TL+ P AEK
Sbjct: 166 VNSLIGITSALGIRLTLVTPIAEK 189

>ITB6_CAVPO (P18563) Integrin beta-6 (Fragment)|
          Length = 577

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -1

Query: 241 SSICHSHQLHYWCQVC---PGHPGDPYCSSCGK 152
           SS CH+    Y C VC   PGH G P+C  CG+
Sbjct: 323 SSKCHNGNGSYQCGVCACNPGHMG-PHC-ECGE 353

>ATG13_EMENI (Q5BBK4) Autophagy-related protein 13|
          Length = 974

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 297 ASSILVLSFLSEATTSVDVPPFATAINSITGARSAPVIRVTLIA 166
           AS I  L    EA  S   PP ++  NS   AR++PV R   +A
Sbjct: 382 ASPISALRAAREARASSPSPPTSSHRNSFAAARASPVGRAATLA 425

>UBF1A_XENLA (P25979) Nucleolar transcription factor 1-A (Upstream binding|
           factor 1-A) (UBF-1-A) (xUBF-1)
          Length = 677

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +2

Query: 206 PVMELMAVANGGTSTDVVASDKKDNTKMEEAGKSKDXXXXXXXXXXXXXXSENDTE-GSS 382
           PV +   VA    S D    D  D  + ++  + +D              S+ D+E G  
Sbjct: 580 PVAKPKLVAQS-KSDDDDEDDDDDEDEDDDDDEDEDKEDSSEDGDSSESSSDEDSEDGEE 638

Query: 383 HDDAKMEEAQDAKEDD 430
           ++D + EE +D +EDD
Sbjct: 639 NEDEEGEEDEDEEEDD 654


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,886,371
Number of Sequences: 219361
Number of extensions: 1189217
Number of successful extensions: 4290
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4284
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)