ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl25g11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U83904.1|HVU83904 Hordeum vulgare lipoxygenase isoenzyme 1 (L... 196 8e-48
2gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds 121 4e-25
3ref|NM_016967.2| Mus musculus oligodendrocyte transcription fact... 46 0.018
4gb|AC034116.10| Mus musculus chromosome 16, clone RP23-428P5, co... 46 0.018
5gb|AC152503.5| Mus musculus BAC clone RP23-190G10 from chromosom... 46 0.018
6dbj|AK080615.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ... 46 0.018
7gb|BC051967.1| Mus musculus oligodendrocyte transcription factor... 46 0.018
8dbj|AB038697.1| Mus musculus mRNA for Olig2 bHLH protein, comple... 46 0.018
9gb|AC009051.8| Homo sapiens chromosome 16 clone RP11-238M18, com... 42 0.29
10gb|AC120057.9| Homo sapiens chromosome 17, clone CTD-2545G14, co... 42 0.29
11gb|AC136285.2| Homo sapiens chromosome 16 clone RP11-899L11, com... 42 0.29
12gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genom... 40 1.1
13ref|XM_463123.1| Oryza sativa (japonica cultivar-group), mRNA 40 1.1
14gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 1.1
15gb|AC126260.3| Mus musculus BAC clone RP23-338J1 from chromosome... 40 1.1
16gb|AC158596.7| Mus musculus 10 BAC RP23-188F7 (Roswell Park Canc... 40 1.1
17dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.1
18gb|AC009953.4| Homo sapiens BAC clone RP11-193F16 from 2, comple... 40 1.1
19dbj|AK070268.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.1
20gb|AC115689.22| Mus musculus chromosome 9, clone RP23-166A9, com... 40 1.1
21gb|AC153955.3| Mus musculus 10 BAC RP24-167A12 (Roswell Park Can... 40 1.1
22gb|AC153805.1| Homo sapiens chromosome 1 clone fa0648, complete ... 38 4.5
23gb|AF064859.1| Homo sapiens chromosome 21q22.3 PAC 141B3, comple... 38 4.5
24ref|XM_416704.1| PREDICTED: Gallus gallus similar to Protein C21... 38 4.5
25gb|AE006370.1| Lactococcus lactis subsp. lactis IL1403 section 1... 38 4.5
26ref|NM_018263.3| Homo sapiens additional sex combs like 2 (Droso... 38 4.5
27gb|AC132910.8| Mus musculus chromosome 17, clone RP24-301I14, co... 38 4.5
28gb|BC064684.1| Xenopus laevis cDNA clone MGC:68851 IMAGE:4680115... 38 4.5
29emb|CR376849.29| Zebrafish DNA sequence from clone CH211-145A9 i... 38 4.5
30gb|AC148217.15| Medicago truncatula clone mth2-20c19, complete s... 38 4.5
31emb|AL163278.2|HS21C078 Homo sapiens chromosome 21 segment HS21C078 38 4.5
32emb|CR933613.1| Homo sapiens mRNA; cDNA DKFZp686C1968 (from clon... 38 4.5
33gb|AC115097.6| Homo sapiens chromosome 11, clone CTD-2532J14, co... 38 4.5
34dbj|AB084281.1| Homo sapiens mRNA for chimeric MOZ-ASXH2 fusion ... 38 4.5
35emb|BX470173.6| Human DNA sequence from clone RP11-739C15 on chr... 38 4.5
36dbj|AK001760.1| Homo sapiens cDNA FLJ10898 fis, clone NT2RP5003492 38 4.5
37gb|AC145591.5| Mus musculus BAC clone RP24-176N2 from chromosome... 38 4.5
38gb|AY948318.1| Haliotis discus hannai clone KHdh50 microsatellit... 38 4.5
39emb|BX935585.2| Gallus gallus finished cDNA, clone ChEST85k13 38 4.5
40gb|AC163699.4| Gallus gallus BAC clone CH261-138A17 from chromos... 38 4.5
41gb|AF323669.1|AF323669 Bacteriophage bIL286, complete genome 38 4.5
42dbj|AB124887.1| Oryza barthii EPSPs, rps20 genes for 5-enolpyruv... 38 4.5
43dbj|AB124886.1| Oryza glaberrima EPSPs, rps20 genes for 5-enolpy... 38 4.5
44gb|AC010150.3| Homo sapiens BAC clone RP11-404P12 from 2, comple... 38 4.5
45dbj|AB051472.2| Homo sapiens mRNA for KIAA1685 protein, partial cds 38 4.5
46gb|AC019055.6| Homo sapiens BAC clone RP11-111P18 from 2, comple... 38 4.5
47gb|AC164654.3| Gallus gallus BAC clone CH261-5H7 from chromosome... 38 4.5
48gb|AF488301.1| Avian infectious bronchitis virus isolate CA/1215... 38 4.5
49gb|AC140361.2| Mus musculus BAC clone RP24-247B3 from chromosome... 38 4.5
50emb|BX647527.1|HSM807673 Homo sapiens mRNA; cDNA DKFZp686F074 (f... 38 4.5
51emb|BX648218.1|HSM808366 Homo sapiens mRNA; cDNA DKFZp686L2369 (... 38 4.5
52dbj|AB084279.1| Homo sapiens ASXH2 mRNA for polycomb group prote... 38 4.5
53dbj|AK000649.1| Homo sapiens cDNA FLJ20642 fis, clone KAT02751 38 4.5
54emb|AL136522.6|CNS01DWA Human chromosome 14 DNA sequence BAC R-1... 38 4.5
55gb|U22069.1|SBU22069 Sorghum bicolor URF209 mRNA, mitochondrial ... 38 4.5 
>gb|U83904.1|HVU83904 Hordeum vulgare lipoxygenase isoenzyme 1 (Lox:Hv1) gene, promoter
            region and partial cds
          Length = 5236

 Score =  196 bits (99), Expect = 8e-48
 Identities = 99/99 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    acacacactcacgcaacacacatccatcttcactgaaaagtgaaaaacagtgtgctggtg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3406 acacacactcacgcaacacacatccatcttcactgaaaagtgaaaaacagtgtgctggtg 3465

                                                   
Query: 61   ccattggttggagcagtgaaagcgaggagaggaggccaa 99
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 3466 ccattggttggagcagtgaaagcgaggagaggaggccaa 3504
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>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds
          Length = 2818

 Score =  121 bits (61), Expect = 4e-25
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 39 agtgaaaaacagtgtgctggtgccattggttggagcagtgaaagcgaggagaggaggcca 98
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  agtgaaaaacagtgtgctggtgccattggttggagcagtgaaagcgaggagaggaggcca 60

           
Query: 99 a 99
          |
Sbjct: 61 a 61
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>ref|NM_016967.2| Mus musculus oligodendrocyte transcription factor 2 (Olig2), mRNA
          Length = 2462

 Score = 46.1 bits (23), Expect = 0.018
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 1    acacacactcacgcaacacacat 23
            |||||||||||||||||||||||
Sbjct: 1892 acacacactcacgcaacacacat 1914
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>gb|AC034116.10| Mus musculus chromosome 16, clone RP23-428P5, complete sequence
          Length = 210023

 Score = 46.1 bits (23), Expect = 0.018
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 1      acacacactcacgcaacacacat 23
              |||||||||||||||||||||||
Sbjct: 161084 acacacactcacgcaacacacat 161106
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>gb|AC152503.5| Mus musculus BAC clone RP23-190G10 from chromosome 16, complete
            sequence
          Length = 204940

 Score = 46.1 bits (23), Expect = 0.018
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 1    acacacactcacgcaacacacat 23
            |||||||||||||||||||||||
Sbjct: 4076 acacacactcacgcaacacacat 4098
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>dbj|AK080615.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched
            library, clone:A830025B18 product:oligodendrocyte
            transcription factor 2, full insert sequence
          Length = 2362

 Score = 46.1 bits (23), Expect = 0.018
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 1    acacacactcacgcaacacacat 23
            |||||||||||||||||||||||
Sbjct: 1870 acacacactcacgcaacacacat 1892
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>gb|BC051967.1| Mus musculus oligodendrocyte transcription factor 2, mRNA (cDNA clone
            MGC:62240 IMAGE:5695592), complete cds
          Length = 2462

 Score = 46.1 bits (23), Expect = 0.018
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 1    acacacactcacgcaacacacat 23
            |||||||||||||||||||||||
Sbjct: 1892 acacacactcacgcaacacacat 1914
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>dbj|AB038697.1| Mus musculus mRNA for Olig2 bHLH protein, complete cds
          Length = 2433

 Score = 46.1 bits (23), Expect = 0.018
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 1    acacacactcacgcaacacacat 23
            |||||||||||||||||||||||
Sbjct: 1871 acacacactcacgcaacacacat 1893
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>gb|AC009051.8| Homo sapiens chromosome 16 clone RP11-238M18, complete sequence
          Length = 157691

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 2     cacacactcacgcaacacaca 22
             |||||||||||||||||||||
Sbjct: 40763 cacacactcacgcaacacaca 40743
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>gb|AC120057.9| Homo sapiens chromosome 17, clone CTD-2545G14, complete sequence
          Length = 198821

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1     acacacactcacgcaacacac 21
             |||||||||||||||||||||
Sbjct: 67476 acacacactcacgcaacacac 67496
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>gb|AC136285.2| Homo sapiens chromosome 16 clone RP11-899L11, complete sequence
          Length = 235286

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 2      cacacactcacgcaacacaca 22
              |||||||||||||||||||||
Sbjct: 137837 cacacactcacgcaacacaca 137817
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>gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genomic sequence, complete
             sequence
          Length = 157397

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     acacactcacgcaacacaca 22
             ||||||||||||||||||||
Sbjct: 42630 acacactcacgcaacacaca 42611
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>ref|XM_463123.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 773

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   acacactcacgcaacacaca 22
           ||||||||||||||||||||
Sbjct: 113 acacactcacgcaacacaca 94
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 3        acacactcacgcaacacaca 22
                ||||||||||||||||||||
Sbjct: 22625516 acacactcacgcaacacaca 22625535
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>gb|AC126260.3| Mus musculus BAC clone RP23-338J1 from chromosome 9, complete sequence
          Length = 208028

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    tccatcttcactgaaaagtgaaaa 46
             ||||||||||| ||||||||||||
Sbjct: 15168 tccatcttcaccgaaaagtgaaaa 15191
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>gb|AC158596.7| Mus musculus 10 BAC RP23-188F7 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 207673

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    tgaaaagtgaaaaacagtgt 53
             ||||||||||||||||||||
Sbjct: 31614 tgaaaagtgaaaaacagtgt 31595
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 3        acacactcacgcaacacaca 22
                ||||||||||||||||||||
Sbjct: 22618545 acacactcacgcaacacaca 22618564
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>gb|AC009953.4| Homo sapiens BAC clone RP11-193F16 from 2, complete sequence
          Length = 160810

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 25    catcttcactgaaaagtgaaaaacagtg 52
             ||||||||||||||| || |||||||||
Sbjct: 99888 catcttcactgaaaactgtaaaacagtg 99915
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>dbj|AK070268.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044E14, full
           insert sequence
          Length = 773

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   acacactcacgcaacacaca 22
           ||||||||||||||||||||
Sbjct: 113 acacactcacgcaacacaca 94
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>gb|AC115689.22| Mus musculus chromosome 9, clone RP23-166A9, complete sequence
          Length = 221548

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    tccatcttcactgaaaagtgaaaa 46
             ||||||||||| ||||||||||||
Sbjct: 93451 tccatcttcaccgaaaagtgaaaa 93428
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>gb|AC153955.3| Mus musculus 10 BAC RP24-167A12 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 154271

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    tgaaaagtgaaaaacagtgt 53
             ||||||||||||||||||||
Sbjct: 70085 tgaaaagtgaaaaacagtgt 70104
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>gb|AC153805.1| Homo sapiens chromosome 1 clone fa0648, complete sequence
          Length = 39930

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 23    tccatcttcactgaaaagt 41
             |||||||||||||||||||
Sbjct: 23599 tccatcttcactgaaaagt 23617
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>gb|AF064859.1| Homo sapiens chromosome 21q22.3 PAC 141B3, complete sequence,
             containing ribosomal protein homologue pseudogene L23a
          Length = 122571

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 1     acacacactcacgcaacacacat 23
             |||||||| ||||||||||||||
Sbjct: 68726 acacacacccacgcaacacacat 68748
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>ref|XM_416704.1| PREDICTED: Gallus gallus similar to Protein C21orf63 precursor
            (Protein PRED34) (SUE21) (UNQ2504/PRO5993) (LOC418496),
            mRNA
          Length = 1354

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 71   gagcagtgaaagcgaggag 89
            |||||||||||||||||||
Sbjct: 1123 gagcagtgaaagcgaggag 1141
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>gb|AE006370.1| Lactococcus lactis subsp. lactis IL1403 section 132 of 218 of the
             complete genome
          Length = 15331

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 26    atcttcactgaaaagtgaaaaac 48
             ||||||||| |||||||||||||
Sbjct: 12803 atcttcactaaaaagtgaaaaac 12781
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>ref|NM_018263.3| Homo sapiens additional sex combs like 2 (Drosophila) (ASXL2), mRNA
          Length = 7231

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 34   tgaaaagtgaaaaacagtg 52
            |||||||||||||||||||
Sbjct: 6412 tgaaaagtgaaaaacagtg 6394
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>gb|AC132910.8| Mus musculus chromosome 17, clone RP24-301I14, complete sequence
          Length = 209975

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 32     actgaaaagtgaaaaacag 50
              |||||||||||||||||||
Sbjct: 167375 actgaaaagtgaaaaacag 167357
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>gb|BC064684.1| Xenopus laevis cDNA clone MGC:68851 IMAGE:4680115, complete cds
          Length = 3641

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 52   gtgctggtgccattggttg 70
            |||||||||||||||||||
Sbjct: 1488 gtgctggtgccattggttg 1506
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>emb|CR376849.29| Zebrafish DNA sequence from clone CH211-145A9 in linkage group 11,
              complete sequence
          Length = 147098

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 53     tgctggtgccattggttgg 71
              |||||||||||||||||||
Sbjct: 133029 tgctggtgccattggttgg 133011
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>gb|AC148217.15| Medicago truncatula clone mth2-20c19, complete sequence
          Length = 113210

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 27    tcttcactgaaaagtgaaa 45
             |||||||||||||||||||
Sbjct: 48848 tcttcactgaaaagtgaaa 48830
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>emb|AL163278.2|HS21C078 Homo sapiens chromosome 21 segment HS21C078
          Length = 340000

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 1      acacacactcacgcaacacacat 23
              |||||||| ||||||||||||||
Sbjct: 310136 acacacacccacgcaacacacat 310158
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>emb|CR933613.1| Homo sapiens mRNA; cDNA DKFZp686C1968 (from clone DKFZp686C1968)
          Length = 7231

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 34   tgaaaagtgaaaaacagtg 52
            |||||||||||||||||||
Sbjct: 6412 tgaaaagtgaaaaacagtg 6394
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>gb|AC115097.6| Homo sapiens chromosome 11, clone CTD-2532J14, complete sequence
          Length = 132923

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 38    aagtgaaaaacagtgtgct 56
             |||||||||||||||||||
Sbjct: 46556 aagtgaaaaacagtgtgct 46538
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>dbj|AB084281.1| Homo sapiens mRNA for chimeric MOZ-ASXH2 fusion protein, complete cds
          Length = 9718

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 34   tgaaaagtgaaaaacagtg 52
            |||||||||||||||||||
Sbjct: 8918 tgaaaagtgaaaaacagtg 8900
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>emb|BX470173.6| Human DNA sequence from clone RP11-739C15 on chromosome 1, complete
             sequence
          Length = 66303

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 23    tccatcttcactgaaaagt 41
             |||||||||||||||||||
Sbjct: 56898 tccatcttcactgaaaagt 56916
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>dbj|AK001760.1| Homo sapiens cDNA FLJ10898 fis, clone NT2RP5003492
          Length = 4281

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 34   tgaaaagtgaaaaacagtg 52
            |||||||||||||||||||
Sbjct: 3481 tgaaaagtgaaaaacagtg 3463
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>gb|AC145591.5| Mus musculus BAC clone RP24-176N2 from chromosome 18, complete sequence
          Length = 167532

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 1     acacacactcacgcaacacacat 23
             |||||||||||| ||||||||||
Sbjct: 60057 acacacactcacacaacacacat 60079
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>gb|AY948318.1| Haliotis discus hannai clone KHdh50 microsatellite sequence
          Length = 51

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 1  acacacactcacgcaacacacat 23
          |||||||||||| ||||||||||
Sbjct: 20 acacacactcacacaacacacat 42
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>emb|BX935585.2| Gallus gallus finished cDNA, clone ChEST85k13
          Length = 1327

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 78  gaaagcgaggagaggaggccaat 100
           ||||||||||||||| |||||||
Sbjct: 299 gaaagcgaggagaggcggccaat 277
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>gb|AC163699.4| Gallus gallus BAC clone CH261-138A17 from chromosome unknown, complete
             sequence
          Length = 240555

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 71    gagcagtgaaagcgaggag 89
             |||||||||||||||||||
Sbjct: 10263 gagcagtgaaagcgaggag 10245
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>gb|AF323669.1|AF323669 Bacteriophage bIL286, complete genome
          Length = 41834

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 26    atcttcactgaaaagtgaaaaac 48
             ||||||||| |||||||||||||
Sbjct: 28672 atcttcactaaaaagtgaaaaac 28694
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>dbj|AB124887.1| Oryza barthii EPSPs, rps20 genes for
            5-enolpyruvylshikimate-3-phosphate synthase, ribosomal
            protein small subunit 20, partial sequences,
            cultivar:W159b-2
          Length = 2960

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 10   cacgcaacacacatccatc 28
            |||||||||||||||||||
Sbjct: 2872 cacgcaacacacatccatc 2890
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>dbj|AB124886.1| Oryza glaberrima EPSPs, rps20 genes for
            5-enolpyruvylshikimate-3-phosphate synthase, ribosomal
            protein small subunit 20, partial sequences,
            cultivar:W025
          Length = 2961

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 10   cacgcaacacacatccatc 28
            |||||||||||||||||||
Sbjct: 2873 cacgcaacacacatccatc 2891
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>gb|AC010150.3| Homo sapiens BAC clone RP11-404P12 from 2, complete sequence
          Length = 173893

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    tgaaaagtgaaaaacagtg 52
             |||||||||||||||||||
Sbjct: 54296 tgaaaagtgaaaaacagtg 54278
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>dbj|AB051472.2| Homo sapiens mRNA for KIAA1685 protein, partial cds
          Length = 7174

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 34   tgaaaagtgaaaaacagtg 52
            |||||||||||||||||||
Sbjct: 6367 tgaaaagtgaaaaacagtg 6349
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>gb|AC019055.6| Homo sapiens BAC clone RP11-111P18 from 2, complete sequence
          Length = 176383

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 80    aagcgaggagaggaggcca 98
             |||||||||||||||||||
Sbjct: 94781 aagcgaggagaggaggcca 94799
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>gb|AC164654.3| Gallus gallus BAC clone CH261-5H7 from chromosome unknown, complete
              sequence
          Length = 250515

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 71     gagcagtgaaagcgaggag 89
              |||||||||||||||||||
Sbjct: 185101 gagcagtgaaagcgaggag 185083
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>gb|AF488301.1| Avian infectious bronchitis virus isolate CA/1215/88 S1
          glycoprotein gene, partial cds
          Length = 423

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 53 tgctggtgccattggttggagca 75
          |||||||||||||| ||||||||
Sbjct: 66 tgctggtgccattgtttggagca 88
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>gb|AC140361.2| Mus musculus BAC clone RP24-247B3 from chromosome 17, complete sequence
          Length = 157937

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 32    actgaaaagtgaaaaacag 50
             |||||||||||||||||||
Sbjct: 29685 actgaaaagtgaaaaacag 29667
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>emb|BX647527.1|HSM807673 Homo sapiens mRNA; cDNA DKFZp686F074 (from clone DKFZp686F074)
          Length = 7264

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 34   tgaaaagtgaaaaacagtg 52
            |||||||||||||||||||
Sbjct: 6440 tgaaaagtgaaaaacagtg 6422
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>emb|BX648218.1|HSM808366 Homo sapiens mRNA; cDNA DKFZp686L2369 (from clone DKFZp686L2369)
          Length = 8910

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 34   tgaaaagtgaaaaacagtg 52
            |||||||||||||||||||
Sbjct: 6393 tgaaaagtgaaaaacagtg 6375
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>dbj|AB084279.1| Homo sapiens ASXH2 mRNA for polycomb group protein, complete cds
          Length = 7030

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 34   tgaaaagtgaaaaacagtg 52
            |||||||||||||||||||
Sbjct: 6230 tgaaaagtgaaaaacagtg 6212
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>dbj|AK000649.1| Homo sapiens cDNA FLJ20642 fis, clone KAT02751
          Length = 1242

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 34  tgaaaagtgaaaaacagtg 52
           |||||||||||||||||||
Sbjct: 423 tgaaaagtgaaaaacagtg 405
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>emb|AL136522.6|CNS01DWA Human chromosome 14 DNA sequence BAC R-144C18 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 183650

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 29    ttcactgaaaagtgaaaaa 47
             |||||||||||||||||||
Sbjct: 70896 ttcactgaaaagtgaaaaa 70878
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>gb|U22069.1|SBU22069 Sorghum bicolor URF209 mRNA, mitochondrial gene encoding
           mitochondrial protein, complete cds
          Length = 1209

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 30  tcactgaaaagtgaaaaacagtg 52
           ||||||||||||||||| |||||
Sbjct: 931 tcactgaaaagtgaaaaccagtg 909


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,360,451
Number of Sequences: 3902068
Number of extensions: 1360451
Number of successful extensions: 87921
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87767
Number of HSP's gapped (non-prelim): 154
length of query: 101
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 80
effective length of database: 17,151,101,840
effective search space: 1372088147200
effective search space used: 1372088147200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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