>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
          Length = 908

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 36/63 (57%), Positives = 46/63 (73%)
 Frame = +3

Query: 267 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLXTYYESMP 446
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTSVPKPLKFLRPHYG L   YE+M 
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMA 114

Query: 447 ESE 455
             E
Sbjct: 115 PGE 117

>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
           (Tumor necrosis factor type 1 receptor-associated
           protein 2) (55.11 protein)
          Length = 908

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 36/63 (57%), Positives = 46/63 (73%)
 Frame = +3

Query: 267 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLXTYYESMP 446
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTSVPKPLKFLRPHYG L   YE+M 
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMA 114

Query: 447 ESE 455
             E
Sbjct: 115 PGE 117

>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome|
           non-ATPase subunit mts4) (19S regulatory cap region of
           26S protease subunit 2)
          Length = 891

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 33/61 (54%), Positives = 43/61 (70%)
 Frame = +3

Query: 270 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLXTYYESMPE 449
           LEL V   QD  P +   +L  +++ IR++TSSMT+VPKPLKFLRPHY TL   Y+S P+
Sbjct: 57  LELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVPKPLKFLRPHYFTLVKIYDSWPQ 116

Query: 450 S 452
           S
Sbjct: 117 S 117

>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1|
          Length = 883

 Score = 62.8 bits (151), Expect = 5e-10
 Identities = 28/58 (48%), Positives = 42/58 (72%)
 Frame = +3

Query: 294 QDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLXTYYESMPESELRST 467
           Q+ D  + + ALE+M+  I+++TSSMT+VPKPLKFLRPHY T+   Y+  P  + +S+
Sbjct: 48  QESDATLYKPALEAMKNSIKTSTSSMTAVPKPLKFLRPHYETMTKLYDEWPAGDDKSS 105

>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome|
           non-ATPase subunit 1)
          Length = 992

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 28/66 (42%), Positives = 45/66 (68%)
 Frame = +3

Query: 270 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLXTYYESMPE 449
           LEL V R ++ D  +   +L ++++ I+++TSSMT+VPKPLKFLRP Y  L + Y+   +
Sbjct: 48  LELLVERLKEDDSSLYEASLNALKESIKNSTSSMTAVPKPLKFLRPTYPDLCSIYDKWTD 107

Query: 450 SELRST 467
             L+S+
Sbjct: 108 PNLKSS 113

>RPN1_CANGA (Q6FPV6) 26S proteasome regulatory subunit RPN1|
          Length = 983

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 25/66 (37%), Positives = 40/66 (60%)
 Frame = +3

Query: 270 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLXTYYESMPE 449
           LE+ V    + D  +    L  +++ I+++TSSMT+VPKPLKFLRP Y  L   Y+   +
Sbjct: 49  LEMLVQTLLEDDSKLYETTLTQLKEFIKNSTSSMTAVPKPLKFLRPFYPDLCKAYDKWSD 108

Query: 450 SELRST 467
            + +S+
Sbjct: 109 KDQKSS 114

>DMF1_SCHPO (P78953) Division mal foutue 1 protein|
          Length = 920

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +3

Query: 273 ELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLXTYYESMPES 452
           ELY+  +++ +P +  +  +S++QE      S TS+PK     +  YG     Y  +P  
Sbjct: 357 ELYLQSSRNSEPEISTIINDSLQQENMDEDISATSIPKS----QAAYGHGSVTYHEVPRY 412

Query: 453 ELRSTWLTY 479
            L S  + Y
Sbjct: 413 NLTSASVGY 421

>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2161

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 11   PTQQRRVASVPLAPRTLASPPAPSPNRIRPA 103
            P ++  +A VPLAP    +PP+P+P R   A
Sbjct: 1129 PPKEGVLAQVPLAPPQPGAPPSPAPARFSTA 1159

>ELL2_HUMAN (O00472) RNA polymerase II elongation factor ELL2|
          Length = 640

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 11  PTQQRRVASVPLAPRTLASP-PAPSPNRIRPASH 109
           PT ++  A +PL P   A P P P P+   P SH
Sbjct: 354 PTSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISH 387

>PCY2_RAT (O88637) Ethanolamine-phosphate cytidylyltransferase (EC|
          2.7.7.14) (Phosphorylethanolamine transferase)
          (CTP:phosphoethanolamine cytidylyltransferase)
          Length = 404

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 93 IRFGDGAGGLARVRGASGTEATRRCCVGVY 4
          IR G GAGG A ++G  G    R  C G Y
Sbjct: 2  IRNGHGAGGAAGLKGPGGQRTVRVWCDGCY 31

>YKY4_CAEEL (Q17963) Hypothetical WD-repeat protein C14B1.4|
          Length = 376

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 11  PTQQRRVASVPLAPRTLASPPAP--SPNRIRPAS 106
           PTQQ    +VP AP   +S PAP  SPN I P++
Sbjct: 15  PTQQIDQLTVPNAPDGGSSAPAPSTSPNSISPSN 48

>YACF_SHIFL (Q83MF4) UPF0289 protein yacF|
          Length = 247

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +3

Query: 306 PGVQRLALESMRQEIRSATSSMTSVPKPLKFLR 404
           PGV +  +E++ Q++++A S + S P+  +FLR
Sbjct: 81  PGVDQSRIEALIQQLKAAVSVLISAPRIGQFLR 113


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,310,864
Number of Sequences: 219361
Number of extensions: 498766
Number of successful extensions: 2602
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2591
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)