ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl25g08 |
|---|---|
| Clone Library Name | barley_pub |
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 180 bits (456), Expect = 2e-45 Identities = 90/129 (69%), Positives = 109/129 (84%), Gaps = 5/129 (3%) Frame = +2 Query: 74 VGGIVSDLTGG----LRGAH-LMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVD 238 +GGI+ LTG L+G+ LMRKNALD NDFGATV+DG++E LGRGVTCQL+SS+ VD Sbjct: 2 LGGIIGGLTGNKNARLKGSLVLMRKNALDINDFGATVIDGISEFLGRGVTCQLVSSSLVD 61 Query: 239 HNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVKNNHASE 418 NNG RG+VG EA+LEQWL T+LP +TTGE+KF VTF+W V+K+G+PGAIIVKNNHA+E Sbjct: 62 PNNGNRGRVGTEASLEQWL--TSLPSLTTGESKFGVTFEWEVEKMGIPGAIIVKNNHAAE 119 Query: 419 FFLKTITLD 445 FFLKTITLD Sbjct: 120 FFLKTITLD 128
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 177 bits (450), Expect = 8e-45 Identities = 89/130 (68%), Positives = 106/130 (81%), Gaps = 6/130 (4%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHL------MRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNV 235 +GGI+ +TG + + L MRKN LD NDFGATV+DG+ E LG+GVTCQLISST V Sbjct: 2 LGGIIDTITGSSKQSRLKGTVVLMRKNVLDLNDFGATVIDGLGEFLGKGVTCQLISSTAV 61 Query: 236 DHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVKNNHAS 415 D NNG RGKVGAEA+LEQW L ++LP +TTGE++F VTFDW VDKLGVPGAIIVKN+H++ Sbjct: 62 DPNNGNRGKVGAEASLEQW-LTSSLPSLTTGESRFGVTFDWDVDKLGVPGAIIVKNHHSN 120 Query: 416 EFFLKTITLD 445 EFFLKTITLD Sbjct: 121 EFFLKTITLD 130
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 172 bits (436), Expect = 3e-43 Identities = 85/129 (65%), Positives = 102/129 (79%), Gaps = 6/129 (4%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHL------MRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNV 235 +GG++ LTG + A L MRKN LD NDFGAT++DG+ E LG+GVTCQLISST V Sbjct: 3 LGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTAV 62 Query: 236 DHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVKNNHAS 415 D +NGGRGKVGAEA LEQW+ T+LP +TTGE+KF +TFDW V+KLGVPGAI+V N H+S Sbjct: 63 DQDNGGRGKVGAEAELEQWV--TSLPSLTTGESKFGLTFDWEVEKLGVPGAIVVNNYHSS 120 Query: 416 EFFLKTITL 442 EF LKTITL Sbjct: 121 EFLLKTITL 129
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 128 bits (322), Expect = 6e-30 Identities = 68/128 (53%), Positives = 92/128 (71%), Gaps = 5/128 (3%) Frame = +2 Query: 74 VGGIVSDLTGG----LRG-AHLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVD 238 +GG+ LTG ++G A LM + LD DF A+++D V E+ G +TCQL+S+T D Sbjct: 2 LGGLKDKLTGKNGNKIKGLAVLMSRKLLDPRDFTASLLDNVHEVFGNSITCQLVSATVAD 61 Query: 239 HNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVKNNHASE 418 NN GRG VG+EANLEQ L T+LP ++ GE+K V F+W +DK GVPGAII+KN+H+++ Sbjct: 62 QNNEGRGIVGSEANLEQGL--TDLPSVSQGESKLTVRFNWEMDKHGVPGAIIIKNHHSTK 119 Query: 419 FFLKTITL 442 FFLKTITL Sbjct: 120 FFLKTITL 127
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 110 bits (275), Expect = 2e-24 Identities = 65/131 (49%), Positives = 89/131 (67%), Gaps = 7/131 (5%) Frame = +2 Query: 74 VGGIVSDLTGG-----LRG-AHLMRKNALDFNDFGATVMDGVTELLGRGVTCQLIS-STN 232 +GGIV + G ++G LM+KN LDF + GA+V+DG+++LLG+ V+ QLIS S N Sbjct: 3 LGGIVDAILGKDDRPKVKGRVILMKKNVLDFINIGASVVDGISDLLGQKVSIQLISGSVN 62 Query: 233 VDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVKNNHA 412 D G GK+ A LE WL T++ IT GE+ F+VTFDW D+ GVPGA I+KN H Sbjct: 63 YD---GLEGKLSNPAYLESWL--TDITPITAGESTFSVTFDWDRDEFGVPGAFIIKNLHL 117 Query: 413 SEFFLKTITLD 445 +EFFLK++TL+ Sbjct: 118 NEFFLKSLTLE 128
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 108 bits (270), Expect = 6e-24 Identities = 52/108 (48%), Positives = 74/108 (68%) Frame = +2 Query: 122 LMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLP 301 LM+KN LDFNDF A+ +D + E LG +T +L+SS D NG +GK+G A+LE W+ Sbjct: 27 LMKKNVLDFNDFNASFLDRLHEFLGNKITLRLVSSDVTDSENGSKGKLGKAAHLEDWI-- 84 Query: 302 TNLPFITTGENKFAVTFDWSVDKLGVPGAIIVKNNHASEFFLKTITLD 445 T + +T GE+ F VTFD+ D G PGA +++N+H SEF LK++TL+ Sbjct: 85 TTITSLTAGESAFKVTFDYETD-FGYPGAFLIRNSHFSEFLLKSLTLE 131
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 101 bits (252), Expect = 7e-22 Identities = 58/132 (43%), Positives = 79/132 (59%), Gaps = 11/132 (8%) Frame = +2 Query: 83 IVSDLTGGLRGAH-----------LMRKNALDFNDFGATVMDGVTELLGRGVTCQLISST 229 ++ L GGL G H +M+KNALDF D ++ D + E LG+ V+ QLISS Sbjct: 1 MLGQLVGGLIGGHHDSKKVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQKVSFQLISSV 60 Query: 230 NVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVKNNH 409 D NG +GK A LE +LL L + GE F VTFDW+ ++ GVPGA ++KN H Sbjct: 61 QSDPANGLQGKHSNPAYLENFLL--TLTPLAAGETAFGVTFDWN-EEFGVPGAFVIKNMH 117 Query: 410 ASEFFLKTITLD 445 +EFFLK++TL+ Sbjct: 118 INEFFLKSLTLE 129
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 97.4 bits (241), Expect = 1e-20 Identities = 54/118 (45%), Positives = 79/118 (66%), Gaps = 3/118 (2%) Frame = +2 Query: 101 GGLRG-AHLMRKNALDFNDFGATVMDGVTELLGR--GVTCQLISSTNVDHNNGGRGKVGA 271 G +RG A L++K+ L DF A+++DGV +LG GV +L+S+T D +NGGRGK+G Sbjct: 21 GRIRGTAVLVKKDVLGLGDFHASLLDGVHNILGHKEGVAFRLVSATARDPSNGGRGKLGK 80 Query: 272 EANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVKNNHASEFFLKTITLD 445 A+LE+ L + GE+ F V F+W + G+PGA++V N++ SEFFLKT+TLD Sbjct: 81 PAHLEE--LVVTMKSTAAGESVFRVAFEWD-ESQGIPGAVVVTNSNRSEFFLKTLTLD 135
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 93.2 bits (230), Expect = 3e-19 Identities = 54/132 (40%), Positives = 74/132 (56%), Gaps = 11/132 (8%) Frame = +2 Query: 83 IVSDLTGGLRGAH-----------LMRKNALDFNDFGATVMDGVTELLGRGVTCQLISST 229 ++ +T GL G H +M KN LDF D ++ + ++LG+ V+ QLISS Sbjct: 1 MIGQITSGLFGGHDDSKKVKGTVVMMNKNVLDFTDLAGSLTGKIFDVLGQKVSFQLISSV 60 Query: 230 NVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVKNNH 409 D NG +GK A LE L T P E F VTFDW+ ++ GVPGA I+KN H Sbjct: 61 QGDPTNGLQGKHSNPAYLENSLF-TLTPLTAGSETAFGVTFDWN-EEFGVPGAFIIKNMH 118 Query: 410 ASEFFLKTITLD 445 +EFFLK++TL+ Sbjct: 119 INEFFLKSLTLE 130
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 83.6 bits (205), Expect = 2e-16 Identities = 57/143 (39%), Positives = 78/143 (54%), Gaps = 25/143 (17%) Frame = +2 Query: 92 DLTGGLRGAH-------LMRKNALDFN--------------DFGATV----MDGVTELLG 196 ++TG L H LMRKN LDFN D G + +DG+T LG Sbjct: 4 NVTGLLNKGHKIRGTVVLMRKNVLDFNTIVSIGGGNVHGVIDSGINIIGSTLDGLTAFLG 63 Query: 197 RGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLG 376 R V+ QLIS+T D N G+GKVG + LE L +LP + GE+ F + F+W ++G Sbjct: 64 RSVSLQLISATKSDAN--GKGKVGKDTFLEGVL--ASLPTLGAGESAFNIHFEWD-HEMG 118 Query: 377 VPGAIIVKNNHASEFFLKTITLD 445 +PGA +KN EFFLK++TL+ Sbjct: 119 IPGAFYIKNYMQVEFFLKSLTLE 141
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 79.7 bits (195), Expect = 3e-15 Identities = 47/108 (43%), Positives = 67/108 (62%) Frame = +2 Query: 122 LMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLP 301 LM KN L+ N G+ V D + LGR V+ QLIS+T D + G+GKVG + LE + Sbjct: 14 LMPKNELEVNPDGSAV-DNLNAFLGRSVSLQLISATKADAH--GKGKVGKDTFLEG--IN 68 Query: 302 TNLPFITTGENKFAVTFDWSVDKLGVPGAIIVKNNHASEFFLKTITLD 445 T+LP + GE+ F + F+W +G+PGA +KN EFFLK++TL+ Sbjct: 69 TSLPTLGAGESAFNIHFEWD-GSMGIPGAFYIKNYMQVEFFLKSLTLE 115
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 79.0 bits (193), Expect = 5e-15 Identities = 55/152 (36%), Positives = 77/152 (50%), Gaps = 25/152 (16%) Frame = +2 Query: 65 MFGVGGIVSDLTGGLRGAH-------LMRKNALDFNDFG------------------ATV 169 MF V G+ L G G H LMRKN LDFN + Sbjct: 1 MFSVPGVSGILNRG--GGHKIKGTVVLMRKNVLDFNSVADLTKGNVGGLIGTGLNVVGST 58 Query: 170 MDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVT 349 +D +T LGR V QLIS+T N G+GKVG + LE ++ +LP + GE+ F + Sbjct: 59 LDNLTAFLGRSVALQLISATKPLAN--GKGKVGKDTFLEGIIV--SLPTLGAGESAFNIQ 114 Query: 350 FDWSVDKLGVPGAIIVKNNHASEFFLKTITLD 445 F+W + +G+PGA +KN EF+LK++TL+ Sbjct: 115 FEWD-ESMGIPGAFYIKNYMQVEFYLKSLTLE 145
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 77.8 bits (190), Expect = 1e-14 Identities = 52/139 (37%), Positives = 74/139 (53%), Gaps = 20/139 (14%) Frame = +2 Query: 89 SDLTGGLRGAH-------LMRKNALDFN-------------DFGATVMDGVTELLGRGVT 208 S +TG L H LMRKN LD N D + +D +T LGR V+ Sbjct: 3 SGVTGILNRGHKIKGTVVLMRKNVLDINSLTTVGGVIGQGFDILGSTVDNLTAFLGRSVS 62 Query: 209 CQLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGA 388 QLIS+T D G+GK+G LE + ++LP + G++ F + F+W D +G+PGA Sbjct: 63 LQLISATKPDAT--GKGKLGKATFLEGII--SSLPTLGAGQSAFKIHFEWD-DDMGIPGA 117 Query: 389 IIVKNNHASEFFLKTITLD 445 +KN +EFFL ++TLD Sbjct: 118 FYIKNFMQTEFFLVSLTLD 136
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 70.9 bits (172), Expect = 1e-12 Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 13/121 (10%) Frame = +2 Query: 122 LMRKNALDFN-------------DFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGK 262 LMRKN L N D + +D +T LGR V+ QLIS+T D N G+GK Sbjct: 18 LMRKNVLHVNSVTSVGGIIGQGLDLVGSTLDTLTAFLGRPVSLQLISATKADAN--GKGK 75 Query: 263 VGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVKNNHASEFFLKTITL 442 +G LE + T+LP + G++ F + F+W D G+ GA +KN +EFFL ++TL Sbjct: 76 LGKATFLEG--IITSLPTLGAGQSAFKINFEWD-DGSGILGAFYIKNFMQTEFFLVSLTL 132 Query: 443 D 445 + Sbjct: 133 E 133
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 69.7 bits (169), Expect = 3e-12 Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 1/126 (0%) Frame = +2 Query: 71 GVGGIVSDLTGGL-RGAHLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVDHNN 247 G GG++ TG L +G L+ V+D T LGR ++ QLIS+T D Sbjct: 32 GKGGVIDTATGILGQGVSLV-----------GGVIDTATSFLGRNISMQLISATQTD--G 78 Query: 248 GGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVKNNHASEFFL 427 G GKVG E LE+ LPT LP + ++ F++ F+W G+PGA +KN EFFL Sbjct: 79 SGNGKVGKEVYLEKH-LPT-LPTLGARQDAFSIFFEWDA-SFGIPGAFYIKNFMTDEFFL 135 Query: 428 KTITLD 445 ++ L+ Sbjct: 136 VSVKLE 141
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 67.8 bits (164), Expect = 1e-11 Identities = 45/130 (34%), Positives = 65/130 (50%), Gaps = 22/130 (16%) Frame = +2 Query: 122 LMRKNALDFNDFGAT----------------------VMDGVTELLGRGVTCQLISSTNV 235 LM KN DFN+F +T ++DG T + R + QLIS+T Sbjct: 17 LMTKNVFDFNEFVSTTRGGIVGAAGGLFGAATDIVGGIVDGATAIFSRNIAIQLISATKT 76 Query: 236 DHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVKNNHAS 415 D G GKVG + LE+ L +LP + ++ F V F+W + G+P A +KN S Sbjct: 77 D--GLGNGKVGKQTFLEKHL--PSLPNLGDRQDAFNVYFEWD-ENFGIPEAFYIKNFMQS 131 Query: 416 EFFLKTITLD 445 EFFL ++TL+ Sbjct: 132 EFFLVSLTLE 141
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 63.9 bits (154), Expect = 2e-10 Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 13/121 (10%) Frame = +2 Query: 122 LMRKNALDFND-------------FGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGK 262 +M+KN LD N F + +D +T ++ QLIS+T D GG+GK Sbjct: 17 VMQKNVLDINSITSVGGIVDQGLGFIGSAVDALT-FAATKISIQLISATKAD---GGKGK 72 Query: 263 VGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVKNNHASEFFLKTITL 442 +G NL + LP + GE + V F+W D G+PGA +KN +EF+LK++ L Sbjct: 73 IGKSTNLRGKI---TLPTLGAGEQAYDVNFEWDSD-FGIPGAFYIKNFMQNEFYLKSLIL 128 Query: 443 D 445 + Sbjct: 129 E 129
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 63.5 bits (153), Expect = 2e-10 Identities = 46/129 (35%), Positives = 66/129 (51%), Gaps = 21/129 (16%) Frame = +2 Query: 122 LMRKNALDFNDFGA--------------------TVMDGVTELLGRGVTCQLISSTNVDH 241 LM+KN LD N A +++D T LGR V +LIS+T D Sbjct: 18 LMQKNVLDINALTAAQSPSGIIGGAFGVVGSIAGSIIDTATAFLGRSVRLRLISATVADA 77 Query: 242 NNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAIIVKN-NHASE 418 + G+GKV EA LE L T++P + ++ F+V F+W +G PGA ++N E Sbjct: 78 S--GKGKVSKEAFLEGLL--TSIPTLGDKQSAFSVHFEWD-SNMGTPGAFYIENFMQGGE 132 Query: 419 FFLKTITLD 445 FFL ++TLD Sbjct: 133 FFLVSLTLD 141
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 40.0 bits (92), Expect = 0.003 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 1/107 (0%) Frame = +2 Query: 128 RKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTN 307 RK D + A +D + +++GR V +LIS+ H + +++ W Sbjct: 88 RKQKEDIKEAVAGHLDALWDMVGRNVVLELISTKI--HPRTKKPMQSGRVSIKDWCQKRG 145 Query: 308 LPFITTGENKFAVTFDWSVDK-LGVPGAIIVKNNHASEFFLKTITLD 445 G++ T +++VD G PGAI V N H EFFL++I ++ Sbjct: 146 ----AKGDH-VVYTAEFTVDADFGEPGAIAVANRHNREFFLESIVVE 187
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 38.5 bits (88), Expect = 0.008 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 1/107 (0%) Frame = +2 Query: 128 RKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTN 307 R+ D D A +D + + +GR V +L+S T D G K A L W + Sbjct: 76 RRRKEDAKDRFAEQLDALADRVGRSVLLELVS-TETDPRKGTPKKSKPSA-LVGWFDKKD 133 Query: 308 LPFITTGENKFAVTFDWSVDK-LGVPGAIIVKNNHASEFFLKTITLD 445 + + T +++VD G PGA+ V N H EF++++I ++ Sbjct: 134 VK-----AERVVYTAEFAVDAGFGEPGAVTVLNRHQREFYIESIVVE 175
>CAGE_HELPY (Q48252) CAG pathogenicity island protein 23 (Protein picB)| Length = 983 Score = 32.3 bits (72), Expect = 0.55 Identities = 23/70 (32%), Positives = 32/70 (45%) Frame = +2 Query: 212 QLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAI 391 QLI++ DHN+ G A L + TN F +NK D+S +GV G+ Sbjct: 742 QLINAFGKDHNDPN----GLVARLAPFCKSTNGEFQWLFDNKATDRLDFSKTIIGVDGSS 797 Query: 392 IVKNNHASEF 421 + NN S F Sbjct: 798 FLDNNDVSPF 807
>CAGE_HELPJ (Q9ZLT4) CAG pathogenicity island protein 23 (Protein picB)| Length = 983 Score = 32.3 bits (72), Expect = 0.55 Identities = 23/70 (32%), Positives = 32/70 (45%) Frame = +2 Query: 212 QLISSTNVDHNNGGRGKVGAEANLEQWLLPTNLPFITTGENKFAVTFDWSVDKLGVPGAI 391 QLI++ DHN+ G A L + TN F +NK D+S +GV G+ Sbjct: 742 QLINAFGKDHNDPN----GLVARLAPFCKSTNGEFQWLFDNKATDRLDFSKTIIGVDGSS 797 Query: 392 IVKNNHASEF 421 + NN S F Sbjct: 798 FLDNNDVSPF 807
>RUVC_LEIXX (Q6AFB6) Crossover junction endodeoxyribonuclease ruvC (EC| 3.1.22.4) (Holliday junction nuclease ruvC) (Holliday juction resolvase ruvC) Length = 208 Score = 32.0 bits (71), Expect = 0.71 Identities = 20/53 (37%), Positives = 29/53 (54%) Frame = -1 Query: 166 GGAEVVEVERVLAHEVGAPEAPRQVAHDAADAKHLRSISGECGTLAKLARCGA 8 G A+ +V+ ++A +G PEAP+ DAADA + G LA L+ GA Sbjct: 118 GSADKKQVQAMVARVLGLPEAPKPA--DAADALAIAICHAWRGGLAALSTSGA 168
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 30.8 bits (68), Expect = 1.6 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = -2 Query: 201 PRPRSSVTPSMTVAPKSLKSSAFLRMRWAPRRPPVRSLTMPPTP 70 PR RS P +P + S ++ R++P PP R PP P Sbjct: 570 PRRRSPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPP 613
>USH1C_MOUSE (Q9ES64) Harmonin (Usher syndrome type-1C protein homolog) (PDZ| domain-containing protein) Length = 910 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Frame = -2 Query: 207 VTPRPRSSVTPSMTVAPKSLKSSAFLRMR---WAPRRPPVRSLTMPPTPNI 64 V P P S +PS AP L SS + W R PP + +PP P+I Sbjct: 563 VMPHPPSVNSPSKVPAPPVLPSSGHVSSSSSPWVQRTPP--PIPIPPPPSI 611
>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan core| protein precursor (HSPG) (Perlecan) (PLC) Length = 3707 Score = 30.0 bits (66), Expect = 2.7 Identities = 17/61 (27%), Positives = 27/61 (44%) Frame = -2 Query: 390 MAPGTPSLSTDQSKVTANLFSPVVMNGRFVGRSHCSRFASAPTFPRPPLLWSTLVELMSW 211 +APGTP + ++S++T + HCS + P P + WS L + W Sbjct: 2528 VAPGTPQVQVEESELT--------LEAGHTATLHCSATGNPP----PTIHWSKLRAPLPW 2575 Query: 210 Q 208 Q Sbjct: 2576 Q 2576
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 29.6 bits (65), Expect = 3.5 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -2 Query: 201 PRPRSSVTPSMTVAPKSLKSSAFLRMRWAPRRPPVRSLTMPPTP 70 PR R+ P +P + S ++ R++P PP R PP P Sbjct: 596 PRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPP 639
>TRPM2_HUMAN (O94759) Transient receptor potential cation channel subfamily M| member 2 (EC 3.6.1.13) (Long transient receptor potential channel 2) (LTrpC2) (LTrpC-2) (Transient receptor potential channel 7) (TrpC7) (Estrogen-responsive element-associated Length = 1503 Score = 29.6 bits (65), Expect = 3.5 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = +2 Query: 122 LMRKNALDFNDFGATVMDGVTELLGRGVTCQLISST 229 LM+K AL F+DF + G L G+TC+LI +T Sbjct: 856 LMKKAALYFSDFWNKLDVGAILLFVAGLTCRLIPAT 891
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 29.6 bits (65), Expect = 3.5 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -2 Query: 201 PRPRSSVTPSMTVAPKSLKSSAFLRMRWAPRRPPVRSLTMPPTP 70 PR R+ P +P + S ++ R++P PP R PP P Sbjct: 577 PRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPP 620
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 29.6 bits (65), Expect = 3.5 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -2 Query: 201 PRPRSSVTPSMTVAPKSLKSSAFLRMRWAPRRPPVRSLTMPPTP 70 PR R+ P +P + S ++ R++P PP R PP P Sbjct: 591 PRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPP 634
>YAI7_SCHPO (Q09894) Hypothetical protein C24B11.07c in chromosome I| Length = 561 Score = 29.3 bits (64), Expect = 4.6 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%) Frame = -2 Query: 300 GRSHCSRFASAPTFPRPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKS-----SA 136 G+ + R SAP+ + + + ++++S RS +PS+ +SLKS Sbjct: 374 GKPNMGRIPSAPSLSKGRAMTADNMDMLSLTTRRSRRSLYSPSLMQMQQSLKSDYEGLGR 433 Query: 135 FLRMRWAPR-RPPVR 94 R+APR PPVR Sbjct: 434 TFDPRFAPRGSPPVR 448
>PROML_BRARE (Q9W735) Prominin-like protein (Fragment)| Length = 713 Score = 29.3 bits (64), Expect = 4.6 Identities = 21/83 (25%), Positives = 36/83 (43%) Frame = +2 Query: 128 RKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKVGAEANLEQWLLPTN 307 RKNA F DF T++ T ++ GV C ++ N+ G + L+ +N Sbjct: 144 RKNADCFEDFLTTLLLTTTFIITAGVLCAYAANQNLSSQLKGMRR----------LVKSN 193 Query: 308 LPFITTGENKFAVTFDWSVDKLG 376 L + T N+ D+ + + G Sbjct: 194 LKDLHTFANQTPAQIDYLISRYG 216
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 29.3 bits (64), Expect = 4.6 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 3/96 (3%) Frame = +2 Query: 170 MDGVTELLGRGVTCQLISSTNVDHNNGG---RGKVGAEANLEQWLLPTNLPFITTGENKF 340 +D + +L G+ + +L+SS +D G R K A L++ T E K Sbjct: 90 LDDIQDLFGKTLLLELVSS-ELDPKTGRERERVKGFAHMTLKEG----------TYEAKM 138 Query: 341 AVTFDWSVDKLGVPGAIIVKNNHASEFFLKTITLDT 448 +V + G GA++V+N H E F+K I L T Sbjct: 139 SVPASF-----GPVGAVLVENEHHREMFIKDIKLIT 169
>RMT2_ASHGO (Q759W1) Arginine N-methyltransferase 2 (EC 2.1.1.-)| Length = 413 Score = 29.3 bits (64), Expect = 4.6 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%) Frame = +2 Query: 269 AEANLEQWLLPTNLPFI----TTGENKFAVTFDWSVDKLGVPGAIIVKNNHASE 418 A A + L T L +I T N+ V DW D + V A IVKN +E Sbjct: 191 ATAAHQDTYLQTELEYIPGALVTKHNRDGVMMDWETDIMRVAAASIVKNREPAE 244
>PCD15_MOUSE (Q99PJ1) Protocadherin-15 precursor| Length = 1943 Score = 28.9 bits (63), Expect = 6.0 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Frame = -2 Query: 267 PTFPRPPLLWSTLVELMSWQVTPRPRSSVT---PSMTVAPKSLKSSAFLRMRWAPRRPPV 97 P PRPP+ ++T +S P P VT P T SL L + PR P Sbjct: 1754 PPLPRPPIAFTTFPLPLS-PPNPPPPQLVTFSLPISTPPTSSLPLPPPLSLPPPPRPPAP 1812 Query: 96 RSLTMPPTPNI 64 R PP+ +I Sbjct: 1813 RLFPQPPSTSI 1823
>PKNH_MYCTU (Q11053) Probable serine/threonine-protein kinase pknH (EC| 2.7.11.1) Length = 626 Score = 28.9 bits (63), Expect = 6.0 Identities = 14/49 (28%), Positives = 20/49 (40%) Frame = -2 Query: 207 VTPRPRSSVTPSMTVAPKSLKSSAFLRMRWAPRRPPVRSLTMPPTPNIF 61 V P P+ S TP P + + WAP P+ + PTP + Sbjct: 328 VQPAPKPSYTPPAQPGPAGQRPGPTGQPSWAPNSGPMPASGPTPTPQYY 376
>ARGJ_ACIAD (Q6FED8) Arginine biosynthesis bifunctional protein argJ [Includes:| Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate syn Length = 406 Score = 28.9 bits (63), Expect = 6.0 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +2 Query: 41 TLPRDRAKMFGVGGIVSDLTGGLRGAHLMRKNALDFNDFGAT 166 T P+ ++ F + G+V +TG +GA ++R N F AT Sbjct: 156 TTPKGASEQFELDGVVYTMTGISKGAGMIRPNMATMLSFVAT 197
>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1874 Score = 28.9 bits (63), Expect = 6.0 Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Frame = -2 Query: 273 SAPTFPRPPLLWSTLVELMSWQVTPR-PRSSVTPSMTVAPKSLKSSAFLRMRWAPRRP-P 100 SA P PLL EL P P S + PKS S AP +P P Sbjct: 647 SAQPTPGEPLLAPPTTELKPESSNPNNPNPSSSAGSNPPPKSSSSDN----PPAPNKPTP 702 Query: 99 VRSLTMPPTPNI 64 S T PP+PN+ Sbjct: 703 TSSSTTPPSPNL 714
>UL38_HCMVA (P16779) Protein UL38| Length = 331 Score = 28.5 bits (62), Expect = 7.9 Identities = 24/93 (25%), Positives = 37/93 (39%) Frame = -2 Query: 375 PSLSTDQSKVTANLFSPVVMNGRFVGRSHCSRFASAPTFPRPPLLWSTLVELMSWQVTPR 196 P D+ + AN + + G + R SAP P L E + TP Sbjct: 226 PMTFVDRDSLRANSLAHIQATGAQPSHAPAQRVLSAP----PSLPLPVSEEDPAAAATPS 281 Query: 195 PRSSVTPSMTVAPKSLKSSAFLRMRWAPRRPPV 97 ++ TP +V P S++S + +P PPV Sbjct: 282 SSAATTPPSSVVPASVES----ELSSSPPLPPV 310
>CELR3_HUMAN (Q9NYQ7) Cadherin EGF LAG seven-pass G-type receptor 3 precursor| (Flamingo homolog 1) (hFmi1) (Multiple epidermal growth factor-like domains 2) (Epidermal growth factor-like 1) Length = 3312 Score = 28.5 bits (62), Expect = 7.9 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = -2 Query: 195 PRSSVTPSMTVAPKSLKSSAFLRMRWAPRRPPVRSLTMPPTP 70 PR S T + APK ++S R R+ P+RP R +P P Sbjct: 262 PRESRT-APEPAPKRMRSRGLFRCRFLPQRPGPRPPGLPARP 302
>TLP_PRUAV (P50694) Thaumatin-like protein precursor| Length = 245 Score = 28.5 bits (62), Expect = 7.9 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 10/51 (19%) Frame = -2 Query: 393 MMAPGT------PSLSTD----QSKVTANLFSPVVMNGRFVGRSHCSRFAS 271 M+ PGT P LST S+ + L +PV NGRF R+ CS AS Sbjct: 35 MVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTDAS 85
>IF2_SYNY3 (P72689) Translation initiation factor IF-2| Length = 1001 Score = 28.5 bits (62), Expect = 7.9 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Frame = -2 Query: 270 APTFPRPPLLWSTLVELMSWQVTPR--PRSSVTPSMTVAPKSLKSSAFLRMRWAPRRPPV 97 APT P+PP+ ++ ++ + + P+S P+ +AP + S + AP PP Sbjct: 114 APTPPQPPVAKASAPKIQKQEEPAQEAPKSVAPPTQPLAPPPVPSLQSPPSKPAPPTPPA 173 Query: 96 RSLTMPP 76 + P Sbjct: 174 KKAAPAP 180
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 28.5 bits (62), Expect = 7.9 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = +2 Query: 377 VPGAIIVKNNHASEFFLKTITLD 445 +PGA +KN EF+LK++TL+ Sbjct: 1 IPGAFYIKNFMQVEFYLKSLTLE 23
>SIPD_SALTY (Q56026) Cell invasion protein sipD (Salmonella invasion protein D)| Length = 343 Score = 28.5 bits (62), Expect = 7.9 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 11/69 (15%) Frame = +2 Query: 212 QLISSTNVDHNNGGRG-KVGAEANLEQWLLPTNLP--FITTGENKFAVTFDWS------- 361 Q+ S+T + G G KV EA QWL NLP + + + + VT D + Sbjct: 207 QINSNTVLFPAQSGSGVKVATEAEARQWLSELNLPNSCLKSYGSGYVVTVDLTPLQKMVQ 266 Query: 362 -VDKLGVPG 385 +D LG PG Sbjct: 267 DIDGLGAPG 275
>GLTB_MAIZE (P23225) Ferredoxin-dependent glutamate synthase, chloroplast| precursor (EC 1.4.7.1) (Fd-GOGAT) Length = 1616 Score = 28.5 bits (62), Expect = 7.9 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -1 Query: 115 APEAPRQVAHDAADAKHLRSISGECG 38 AP AP++ AAD H+ S G CG Sbjct: 74 APPAPQKPTQQAADLNHILSERGACG 99
>PEPP2_HUMAN (Q9BQY4) Paired-like homeobox protein PEPP-2 (Testis homeobox gene| 1) Length = 288 Score = 28.5 bits (62), Expect = 7.9 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Frame = -2 Query: 399 LTMMAPGTPSLSTDQSKVTANLFSPVVMNGRFVGRSHCSRFA-SAPTFPRPPL 244 L MA G P + T +TA LF + + F SH S P FP P L Sbjct: 202 LPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSSSLCFPMPPFPPPSL 254 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,935,196 Number of Sequences: 219361 Number of extensions: 822979 Number of successful extensions: 3477 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 3312 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3434 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
