ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl25g08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 622 bits (314), Expect = e-175 Identities = 323/326 (99%) Strand = Plus / Plus Query: 121 cctcatgcgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgt 180 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 138 cctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcccacgtcatggacggcgt 197 Query: 181 caccgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgacca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 caccgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgacca 257 Query: 241 caacaacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtggctcctgcc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 258 caacaacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtggctcctgcc 317 Query: 301 gacgaacctgccgttcatcaccaccggcgagaacaagttcgccgtcaccttcgactggtc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 gacgaacctgccgttcatcaccaccggcgagaacaagttcgccgtcaccttcgactggtc 377 Query: 361 ggtggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagtt 420 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 378 ggtggacaagctgggggtgccgggggccatcatcgtcaagaacaaccacgcctccgagtt 437 Query: 421 cttcctcaagaccatcaccctcgaca 446 |||||||||||||||||||||||||| Sbjct: 438 cttcctcaagaccatcaccctcgaca 463 Score = 153 bits (77), Expect = 6e-34 Identities = 117/125 (93%), Gaps = 4/125 (3%) Strand = Plus / Plus Query: 1 acacagcagcaccacagcgagctaacttagcaagcgtgccacactccccagagatcgagc 60 |||||||| |||| |||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 4 acacagca-caccgcagcgagctaacttag-aagcgtgccacactccc-agagatcgagc 60 Query: 61 gaagatgtttggcgtcggcggcatcgtgagcgacctgacggggggcctccggggcgccca 120 |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 61 -aagatgcttggcgtcggcggcatcgtgagcgacttgacggggggcatccggggcgccca 119 Query: 121 cctca 125 ||||| Sbjct: 120 cctca 124
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds Length = 2595 Score = 248 bits (125), Expect = 1e-62 Identities = 274/324 (84%), Gaps = 6/324 (1%) Strand = Plus / Plus Query: 122 ctcatgcgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgtc 181 |||||||||||||||| ||| ||| ||||||||||||||||||||||| | ||| || || Sbjct: 70 ctcatgcgcaagaacgtgctggacctcaacgacttcggcgccaccgtcgttgacagcatc 129 Query: 182 accgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgaccac 241 | |||| |||||||| || ||||||||||||||||||||||||||| ||||||| | Sbjct: 130 agcgagttcctcggcaagggggtcacctgccagctcatcagctccaccctcgtcgacgcc 189 Query: 242 aacaacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtggctcctgccg 301 |||||||| |||||| ||| || |||||||||||||||||||||||||| | Sbjct: 190 aacaacggcaaccgcgggcgggtcggggcggaggcgaacctggagcagtggct------g 243 Query: 302 acgaacctgccgttcatcaccaccggcgagaacaagttcgccgtcaccttcgactggtcg 361 |||| |||||||| | || ||||||||| |||||||| |||||| ||||||||| | Sbjct: 244 acgagcctgccgtcgctgacgaccggcgagtccaagttcggcgtcacgttcgactgggag 303 Query: 362 gtggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttc 421 ||||| |||||||| |||||||| ||| || |||||||||||||||||||| |||||||| Sbjct: 304 gtggagaagctgggagtgccgggggccgtcgtcgtcaagaacaaccacgccgccgagttc 363 Query: 422 ttcctcaagaccatcaccctcgac 445 ||||||||||| |||||||||||| Sbjct: 364 ttcctcaagacaatcaccctcgac 387
>gb|AF457968.1| Zea mays clone cho1c.pk002.j23, mRNA sequence Length = 515 Score = 248 bits (125), Expect = 1e-62 Identities = 274/324 (84%), Gaps = 6/324 (1%) Strand = Plus / Plus Query: 122 ctcatgcgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgtc 181 |||||||||||||||| ||| ||| ||||||||||||||||||||||| | ||| || || Sbjct: 132 ctcatgcgcaagaacgtgctggacctcaacgacttcggcgccaccgtcgttgacagcatc 191 Query: 182 accgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgaccac 241 | |||| |||||||| || ||||||||||||||||||||||||||| ||||||| | Sbjct: 192 agcgagttcctcggcaagggggtcacctgccagctcatcagctccaccctcgtcgacgcc 251 Query: 242 aacaacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtggctcctgccg 301 |||||||| |||||| ||| || |||||||||||||||||||||||||| | Sbjct: 252 aacaacggcaaccgcgggcgggtcggggcggaggcgaacctggagcagtggct------g 305 Query: 302 acgaacctgccgttcatcaccaccggcgagaacaagttcgccgtcaccttcgactggtcg 361 |||| |||||||| | || ||||||||| |||||||| |||||| ||||||||| | Sbjct: 306 acgagcctgccgtcgctgacgaccggcgagtccaagttcggcgtcacgttcgactgggag 365 Query: 362 gtggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttc 421 ||||| |||||||| |||||||| ||| || |||||||||||||||||||| |||||||| Sbjct: 366 gtggagaagctgggagtgccgggggccgtcgtcgtcaagaacaaccacgccgccgagttc 425 Query: 422 ttcctcaagaccatcaccctcgac 445 ||||||||||| |||||||||||| Sbjct: 426 ttcctcaagacaatcaccctcgac 449
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds Length = 2818 Score = 172 bits (87), Expect = 6e-40 Identities = 150/171 (87%) Strand = Plus / Plus Query: 122 ctcatgcgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgtc 181 |||||||||||||||| ||| ||| |||||||||||||||||||| |||| |||||| || Sbjct: 141 ctcatgcgcaagaacgtgctggacctcaacgacttcggcgccaccatcatcgacggcatc 200 Query: 182 accgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgaccac 241 |||| |||||||| ||||||||||||||||| |||||||||||| ||||||||| Sbjct: 201 ggcgagttcctcggcaagggcgtcacctgccagcttatcagctccaccgccgtcgaccaa 260 Query: 242 aacaacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtgg 292 ||||||| || |||||||||||||||||||||||| | |||||||||||| Sbjct: 261 gacaacggcggtcgcgggaaggtgggcgcggaggcggagctggagcagtgg 311 Score = 97.6 bits (49), Expect = 3e-17 Identities = 94/109 (86%) Strand = Plus / Plus Query: 334 caagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcgccatcat 393 |||||||| | |||||||||||||| |||||| ||||| |||||||||||||||||| | Sbjct: 347 caagttcggcctcaccttcgactgggaggtggagaagctcggggtgccgggcgccatcgt 406 Query: 394 cgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 442 |||||| ||| ||||| |||||||||| | || || |||||||||||| Sbjct: 407 cgtcaacaactaccacagctccgagttcctgcttaaaaccatcaccctc 455
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2613 Score = 170 bits (86), Expect = 2e-39 Identities = 152/174 (87%) Strand = Plus / Plus Query: 121 cctcatgcgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgt 180 |||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| | Sbjct: 66 cctcatgcgcaagaacgccctcgacatcaacgacttcggcgccaccgtcatcgacggcat 125 Query: 181 caccgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgacca 240 | ||||| ||||||||||||||||||||||||||||| |||||||| || |||||||| Sbjct: 126 ctccgagttcctcggccgcggcgtcacctgccagctcgtcagctcctccctcgtcgaccc 185 Query: 241 caacaacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtggct 294 |||||| || | |||| |||||| ||||||||| ||||||||||||||| Sbjct: 186 caacaatgggaacagggggagggtggggacggaggcgagcctggagcagtggct 239 Score = 119 bits (60), Expect = 8e-24 Identities = 63/64 (98%) Strand = Plus / Plus Query: 383 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 442 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 322 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 381 Query: 443 gaca 446 |||| Sbjct: 382 gaca 385
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence Length = 2928 Score = 170 bits (86), Expect = 2e-39 Identities = 152/174 (87%) Strand = Plus / Plus Query: 121 cctcatgcgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgt 180 |||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| | Sbjct: 181 cctcatgcgcaagaacgccctcgacatcaacgacttcggcgccaccgtcatcgacggcat 240 Query: 181 caccgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgacca 240 | ||||| ||||||||||||||||||||||||||||| |||||||| || |||||||| Sbjct: 241 ctccgagttcctcggccgcggcgtcacctgccagctcgtcagctcctccctcgtcgaccc 300 Query: 241 caacaacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtggct 294 |||||| || | |||| |||||| ||||||||| ||||||||||||||| Sbjct: 301 caacaatgggaacagggggagggtggggacggaggcgagcctggagcagtggct 354 Score = 119 bits (60), Expect = 8e-24 Identities = 63/64 (98%) Strand = Plus / Plus Query: 383 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 442 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 437 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 496 Query: 443 gaca 446 |||| Sbjct: 497 gaca 500
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2601 Score = 168 bits (85), Expect = 1e-38 Identities = 151/173 (87%) Strand = Plus / Plus Query: 122 ctcatgcgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgtc 181 |||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| || Sbjct: 70 ctcatgcgcaagaacgtcctcgacctcaacgacttcggcgccaccgtcatcgacggcctc 129 Query: 182 accgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgaccac 241 |||| |||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 130 ggcgagttcctcggcaagggcgtcacctgccagctcatcagctccaccgccgtcgaccca 189 Query: 242 aacaacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtggct 294 |||||||| || ||||||||||| |||||||||| ||||||||||||||| Sbjct: 190 aacaacggcaaccgggggaaggtgggggcggaggcgagcctggagcagtggct 242 Score = 97.6 bits (49), Expect = 3e-17 Identities = 73/81 (90%) Strand = Plus / Plus Query: 365 gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttc 424 |||||||| || |||||||| |||||||||||||||||| ||||| | |||||||||| Sbjct: 310 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttc 369 Query: 425 ctcaagaccatcaccctcgac 445 ||||||||||||||||||||| Sbjct: 370 ctcaagaccatcaccctcgac 390
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 157 bits (79), Expect = 4e-35 Identities = 109/119 (91%) Strand = Plus / Plus Query: 121 cctcatgcgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgt 180 |||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| | Sbjct: 30023325 cctcatgcgcaagaacgccctcgacatcaacgacttcggcgccaccgtcatcgacggcat 30023384 Query: 181 caccgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgacc 239 | ||||| ||||||||||||||||||||||||||||| |||||||| || |||||||| Sbjct: 30023385 ctccgagttcctcggccgcggcgtcacctgccagctcgtcagctcctccctcgtcgacc 30023443 Score = 131 bits (66), Expect = 2e-27 Identities = 105/118 (88%) Strand = Plus / Plus Query: 122 ctcatgcgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgtc 181 |||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| || Sbjct: 27798775 ctcatgcgcaagaacgtcctcgacctcaacgacttcggcgccaccgtcatcgacggcctc 27798834 Query: 182 accgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgacc 239 |||| |||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 27798835 ggcgagttcctcggcaagggcgtcacctgccagctcatcagctccaccgccgtcgacc 27798892 Score = 119 bits (60), Expect = 8e-24 Identities = 63/64 (98%) Strand = Plus / Plus Query: 383 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 442 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 30023659 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 30023718 Query: 443 gaca 446 |||| Sbjct: 30023719 gaca 30023722 Score = 97.6 bits (49), Expect = 3e-17 Identities = 73/81 (90%) Strand = Plus / Plus Query: 365 gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttc 424 |||||||| || |||||||| |||||||||||||||||| ||||| | |||||||||| Sbjct: 27799413 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttc 27799472 Query: 425 ctcaagaccatcaccctcgac 445 ||||||||||||||||||||| Sbjct: 27799473 ctcaagaccatcaccctcgac 27799493 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 363 tggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttct 422 ||||||||| || ||||| || ||||||||| |||||||| ||||| || |||||| Sbjct: 27758793 tggacaagcatggtgtgccaggggccatcatcatcaagaaccaccacagtaccaagttct 27758852 Query: 423 tcctcaagaccatcaccctc 442 |||||||||||||||||||| Sbjct: 27758853 tcctcaagaccatcaccctc 27758872 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 257 gggaaggtgggcgcggaggcgaacctggagcagtggct 294 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 27799308 gggaaggtgggggcggaggcgagcctggagcagtggct 27799345 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 413 tccgagttcttcctcaagaccatcaccctcgac 445 |||||||||||||||||||| ||||||||||| Sbjct: 27816818 tccgagttcttcctcaagacgctcaccctcgac 27816850 Score = 44.1 bits (22), Expect = 0.39 Identities = 34/38 (89%) Strand = Plus / Plus Query: 257 gggaaggtgggcgcggaggcgaacctggagcagtggct 294 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 30023539 gggagggtggggacggaggcgagcctggagcagtggct 30023576 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgag 90 |||||||||||||||||||| Sbjct: 24817033 ggcgtcggcggcatcgtgag 24817052
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 157 bits (79), Expect = 4e-35 Identities = 109/119 (91%) Strand = Plus / Minus Query: 121 cctcatgcgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgt 180 |||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| | Sbjct: 84426 cctcatgcgcaagaacgccctcgacatcaacgacttcggcgccaccgtcatcgacggcat 84367 Query: 181 caccgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgacc 239 | ||||| ||||||||||||||||||||||||||||| |||||||| || |||||||| Sbjct: 84366 ctccgagttcctcggccgcggcgtcacctgccagctcgtcagctcctccctcgtcgacc 84308 Score = 119 bits (60), Expect = 8e-24 Identities = 63/64 (98%) Strand = Plus / Minus Query: 383 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 442 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 84092 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 84033 Query: 443 gaca 446 |||| Sbjct: 84032 gaca 84029 Score = 44.1 bits (22), Expect = 0.39 Identities = 34/38 (89%) Strand = Plus / Minus Query: 257 gggaaggtgggcgcggaggcgaacctggagcagtggct 294 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 84212 gggagggtggggacggaggcgagcctggagcagtggct 84175
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 157 bits (79), Expect = 4e-35 Identities = 109/119 (91%) Strand = Plus / Plus Query: 121 cctcatgcgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgt 180 |||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| | Sbjct: 30114747 cctcatgcgcaagaacgccctcgacatcaacgacttcggcgccaccgtcatcgacggcat 30114806 Query: 181 caccgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgacc 239 | ||||| ||||||||||||||||||||||||||||| |||||||| || |||||||| Sbjct: 30114807 ctccgagttcctcggccgcggcgtcacctgccagctcgtcagctcctccctcgtcgacc 30114865 Score = 131 bits (66), Expect = 2e-27 Identities = 105/118 (88%) Strand = Plus / Plus Query: 122 ctcatgcgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgtc 181 |||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| || Sbjct: 27890099 ctcatgcgcaagaacgtcctcgacctcaacgacttcggcgccaccgtcatcgacggcctc 27890158 Query: 182 accgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgacc 239 |||| |||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 27890159 ggcgagttcctcggcaagggcgtcacctgccagctcatcagctccaccgccgtcgacc 27890216 Score = 119 bits (60), Expect = 8e-24 Identities = 63/64 (98%) Strand = Plus / Plus Query: 383 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 442 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 30115081 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 30115140 Query: 443 gaca 446 |||| Sbjct: 30115141 gaca 30115144 Score = 97.6 bits (49), Expect = 3e-17 Identities = 73/81 (90%) Strand = Plus / Plus Query: 365 gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttc 424 |||||||| || |||||||| |||||||||||||||||| ||||| | |||||||||| Sbjct: 27890737 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttc 27890796 Query: 425 ctcaagaccatcaccctcgac 445 ||||||||||||||||||||| Sbjct: 27890797 ctcaagaccatcaccctcgac 27890817 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 363 tggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttct 422 ||||||||| || ||||| || ||||||||| |||||||| ||||| || |||||| Sbjct: 27850116 tggacaagcatggtgtgccaggggccatcatcatcaagaaccaccacagtaccaagttct 27850175 Query: 423 tcctcaagaccatcaccctc 442 |||||||||||||||||||| Sbjct: 27850176 tcctcaagaccatcaccctc 27850195 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 257 gggaaggtgggcgcggaggcgaacctggagcagtggct 294 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 27890632 gggaaggtgggggcggaggcgagcctggagcagtggct 27890669 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 413 tccgagttcttcctcaagaccatcaccctcgac 445 |||||||||||||||||||| ||||||||||| Sbjct: 27908142 tccgagttcttcctcaagacgctcaccctcgac 27908174 Score = 44.1 bits (22), Expect = 0.39 Identities = 34/38 (89%) Strand = Plus / Plus Query: 257 gggaaggtgggcgcggaggcgaacctggagcagtggct 294 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 30114961 gggagggtggggacggaggcgagcctggagcagtggct 30114998 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgag 90 |||||||||||||||||||| Sbjct: 24908356 ggcgtcggcggcatcgtgag 24908375
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 Length = 2830 Score = 155 bits (78), Expect = 1e-34 Identities = 150/174 (86%) Strand = Plus / Plus Query: 121 cctcatgcgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgt 180 |||||||||||||||||| |||||| ||||||||||||||||||||||||| || || | Sbjct: 163 cctcatgcgcaagaacgccctcgacatcaacgacttcggcgccaccgtcatcgagcgcat 222 Query: 181 caccgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgacca 240 | ||||| ||||||||||||||||||||||||||||| |||||||| || |||||||| Sbjct: 223 ctccgagttcctcggccgcggcgtcacctgccagctcgtcagctcctccctcgtcgaccc 282 Query: 241 caacaacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtggct 294 |||||| || | |||| |||||| ||||||||| ||||||||||||||| Sbjct: 283 caacaatgggaacagggggagggtggggacggaggcgagcctggagcagtggct 336 Score = 119 bits (60), Expect = 8e-24 Identities = 63/64 (98%) Strand = Plus / Plus Query: 383 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 442 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 419 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 478 Query: 443 gaca 446 |||| Sbjct: 479 gaca 482
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 155 bits (78), Expect = 1e-34 Identities = 152/177 (85%), Gaps = 6/177 (3%) Strand = Plus / Plus Query: 269 gcggaggcgaacctggagcagtggctcctgccgacgaacctgccgttcatcaccaccggc 328 |||||||||||||||||||||||||| ||||| |||||||| | || |||||| Sbjct: 945 gcggaggcgaacctggagcagtggct------gacgagcctgccgtcgctgacgaccggc 998 Query: 329 gagaacaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcgcc 388 ||| |||||||| |||||| ||||||||| |||||| |||||||| |||||||| ||| Sbjct: 999 gagtccaagttcggcgtcacgttcgactgggaggtggagaagctgggagtgccgggggcc 1058 Query: 389 atcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcgac 445 || |||||||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct: 1059 gtcgtcgtcaagaacaaccacgccgccgagttcttcctcaagacaatcaccctcgac 1115 Score = 113 bits (57), Expect = 5e-22 Identities = 102/117 (87%) Strand = Plus / Plus Query: 122 ctcatgcgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgtc 181 |||||||||||||||| ||| ||| ||||||||||||||||||||||| | ||| || || Sbjct: 218 ctcatgcgcaagaacgtgctggacctcaacgacttcggcgccaccgtcgttgacagcatc 277 Query: 182 accgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgac 238 | |||| |||||||| || ||||||||||||||||||||||||||| ||||||| Sbjct: 278 agcgagttcctcggcaagggggtcacctgccagctcatcagctccaccctcgtcgac 334
>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds Length = 2845 Score = 151 bits (76), Expect = 2e-33 Identities = 106/116 (91%) Strand = Plus / Plus Query: 327 gcgagaacaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcg 386 |||||||| ||||| |||||||||||||||| |||||| |||| ||| | ||||||| Sbjct: 290 gcgagaaccagttccgcgtcaccttcgactgggaggtggagaagcagggcatcccgggcg 349 Query: 387 ccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 350 ccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 405 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 184 cgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgaccacaa 243 |||| |||||||||||||||||||||||||||| |||||||||||| |||||||| || Sbjct: 153 cgagttcctcggccgcggcgtcacctgccagcttatcagctccaccgtcgtcgaccctaa 212 Query: 244 caacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtggct 294 |||||| ||||||||| ||||||||||||||| ||||||||||||||| Sbjct: 213 caacggcaaccgcgggaagttgggcgcggaggcgagcctggagcagtggct 263
>gb|AF465642.1| Zea mays Golden cross bantam-70 lipoxygenase gene, promoter region and partial cds Length = 3196 Score = 139 bits (70), Expect = 9e-30 Identities = 109/122 (89%) Strand = Plus / Plus Query: 324 ccggcgagaacaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgg 383 |||||||| || ||||| |||||||||||||||| |||||| |||| || || |||| Sbjct: 2808 ccggcgaggaccagttccgcgtcaccttcgactgggaggtggagaagcacggcgtcccgg 2867 Query: 384 gcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcg 443 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 2868 gcgccatcatcgtgaagaacaaccacgcctccgagttcttcctcaagaccatcaccatcg 2927 Query: 444 ac 445 || Sbjct: 2928 ac 2929 Score = 79.8 bits (40), Expect = 7e-12 Identities = 64/72 (88%) Strand = Plus / Plus Query: 168 tcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagctcca 227 ||||||||||| || |||| ||||||||||||||||||||||||| ||| ||||||||| Sbjct: 2387 tcatggacggcctcggcgagttcctcggccgcggcgtcacctgccaactcgtcagctcca 2446 Query: 228 ccaacgtcgacc 239 || |||||||| Sbjct: 2447 ccgtcgtcgacc 2458 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 254 cgcgggaaggtgggcgcggaggcgaacctggagcagtggctcctgc 299 |||||||||||||| |||||||| ||||||||||||||| |||| Sbjct: 2744 cgcgggaaggtgggtcaggaggcgagcctggagcagtggctgctgc 2789
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 131 bits (66), Expect = 2e-27 Identities = 105/118 (88%) Strand = Plus / Plus Query: 122 ctcatgcgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgtc 181 |||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| || Sbjct: 42905 ctcatgcgcaagaacgtcctcgacctcaacgacttcggcgccaccgtcatcgacggcctc 42964 Query: 182 accgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgacc 239 |||| |||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 42965 ggcgagttcctcggcaagggcgtcacctgccagctcatcagctccaccgccgtcgacc 43022 Score = 97.6 bits (49), Expect = 3e-17 Identities = 73/81 (90%) Strand = Plus / Plus Query: 365 gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttc 424 |||||||| || |||||||| |||||||||||||||||| ||||| | |||||||||| Sbjct: 43543 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttc 43602 Query: 425 ctcaagaccatcaccctcgac 445 ||||||||||||||||||||| Sbjct: 43603 ctcaagaccatcaccctcgac 43623 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 363 tggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttct 422 ||||||||| || ||||| || ||||||||| |||||||| ||||| || |||||| Sbjct: 2922 tggacaagcatggtgtgccaggggccatcatcatcaagaaccaccacagtaccaagttct 2981 Query: 423 tcctcaagaccatcaccctc 442 |||||||||||||||||||| Sbjct: 2982 tcctcaagaccatcaccctc 3001 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 257 gggaaggtgggcgcggaggcgaacctggagcagtggct 294 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 43438 gggaaggtgggggcggaggcgagcctggagcagtggct 43475 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 413 tccgagttcttcctcaagaccatcaccctcgac 445 |||||||||||||||||||| ||||||||||| Sbjct: 60948 tccgagttcttcctcaagacgctcaccctcgac 60980
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 131 bits (66), Expect = 2e-27 Identities = 105/118 (88%) Strand = Plus / Minus Query: 122 ctcatgcgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgtc 181 |||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| || Sbjct: 15118 ctcatgcgcaagaacgtcctcgacctcaacgacttcggcgccaccgtcatcgacggcctc 15059 Query: 182 accgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgacc 239 |||| |||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 15058 ggcgagttcctcggcaagggcgtcacctgccagctcatcagctccaccgccgtcgacc 15001 Score = 97.6 bits (49), Expect = 3e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 365 gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttc 424 |||||||| || |||||||| |||||||||||||||||| ||||| | |||||||||| Sbjct: 14480 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttc 14421 Query: 425 ctcaagaccatcaccctcgac 445 ||||||||||||||||||||| Sbjct: 14420 ctcaagaccatcaccctcgac 14400 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 363 tggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttct 422 ||||||||| || ||||| || ||||||||| |||||||| ||||| || |||||| Sbjct: 55101 tggacaagcatggtgtgccaggggccatcatcatcaagaaccaccacagtaccaagttct 55042 Query: 423 tcctcaagaccatcaccctc 442 |||||||||||||||||||| Sbjct: 55041 tcctcaagaccatcaccctc 55022 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 257 gggaaggtgggcgcggaggcgaacctggagcagtggct 294 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 14585 gggaaggtgggggcggaggcgagcctggagcagtggct 14548
>gb|AF464895.1| Oryza sativa basmati-370 lipoxygenase (Lox) gene, partial cds Length = 1160 Score = 117 bits (59), Expect = 3e-23 Identities = 89/99 (89%) Strand = Plus / Plus Query: 128 cgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgtcaccgag 187 ||||||||||| |||||| ||||||||||||||||||||||| | | ||||| ||||| Sbjct: 1 cgcaagaacgccctcgacatcaacgacttcggcgccaccgtcctcgggcgcgtctccgag 60 Query: 188 ctcctcggccgcggcgtcacctgccagctcatcagctcc 226 ||||||||||||||||||||||||||||| |||||||| Sbjct: 61 ttcctcggccgcggcgtcacctgccagctcgtcagctcc 99 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 383 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 442 ||||||| || || ||||||| |||||||| ||| | || |||||||||||||||||||| Sbjct: 250 ggcgccagcaccggcaagaaccaccacgccgccggggtcgtcctcaagaccatcaccctc 309 Query: 443 g 443 | Sbjct: 310 g 310
>gb|U83904.1|HVU83904 Hordeum vulgare lipoxygenase isoenzyme 1 (Lox:Hv1) gene, promoter region and partial cds Length = 5236 Score = 111 bits (56), Expect = 2e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 122 ctcatgcgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgtc 181 |||||||||||||||| ||| ||| |||||||||||||||||||| |||| |||||| || Sbjct: 3584 ctcatgcgcaagaacgtgctggacctcaacgacttcggcgccaccatcatcgacggcatc 3643 Query: 182 accgagctcctcggccgcggcgtcacctgccagctcatcagctccacc 229 |||| |||||||| ||||||||||||||||| |||||||||||| Sbjct: 3644 ggcgagttcctcggcaagggcgtcacctgccagcttatcagctccacc 3691 Score = 97.6 bits (49), Expect = 3e-17 Identities = 94/109 (86%) Strand = Plus / Plus Query: 334 caagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcgccatcat 393 |||||||| | |||||||||||||| |||||| ||||| |||||||||||||||||| | Sbjct: 4340 caagttcggcctcaccttcgactgggaggtggagaagctcggggtgccgggcgccatcgt 4399 Query: 394 cgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 442 |||||| ||| ||||| |||||||||| | || || |||||||||||| Sbjct: 4400 cgtcaacaactaccacagctccgagttcctgcttaaaaccatcaccctc 4448 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 243 acaacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtgg 292 ||||||| || |||||||||||||||||||||||| | |||||||||||| Sbjct: 4255 acaacggcggtcgcgggaaggtgggcgcggaggcggagctggagcagtgg 4304
>ref|XM_469401.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2726 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 363 tggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttct 422 ||||||||| || ||||| || ||||||||| |||||||| ||||| || |||||| Sbjct: 302 tggacaagcatggtgtgccaggggccatcatcatcaagaaccaccacagtaccaagttct 361 Query: 423 tcctcaagaccatcaccctc 442 |||||||||||||||||||| Sbjct: 362 tcctcaagaccatcaccctc 381
>dbj|AB099850.1| Oryza sativa (japonica cultivar-group) r9-LOX1 mRNA for 9-lipoxigenase, complete cds Length = 2988 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 363 tggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttct 422 ||||||||| || ||||| || ||||||||| |||||||| ||||| || |||||| Sbjct: 368 tggacaagcatggtgtgccaggggccatcatcatcaagaaccaccacagtaccaagttct 427 Query: 423 tcctcaagaccatcaccctc 442 |||||||||||||||||||| Sbjct: 428 tcctcaagaccatcaccctc 447
>dbj|AK103565.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132L12, full insert sequence Length = 2830 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 363 tggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttct 422 ||||||||| || ||||| || ||||||||| |||||||| ||||| || |||||| Sbjct: 376 tggacaagcatggtgtgccaggggccatcatcatcaagaaccaccacagtaccaagttct 435 Query: 423 tcctcaagaccatcaccctc 442 |||||||||||||||||||| Sbjct: 436 tcctcaagaccatcaccctc 455
>ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2686 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 413 tccgagttcttcctcaagaccatcaccctcgac 445 |||||||||||||||||||| ||||||||||| Sbjct: 185 tccgagttcttcctcaagacgctcaccctcgac 217
>ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3165 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 413 tccgagttcttcctcaagaccatcaccctcgac 445 |||||||||||||||||||| ||||||||||| Sbjct: 664 tccgagttcttcctcaagacgctcaccctcgac 696
>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity lipoxygenase mRNA, complete cds Length = 3154 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 413 tccgagttcttcctcaagaccatcaccctcgac 445 |||||||||||||||||||| ||||||||||| Sbjct: 658 tccgagttcttcctcaagacgctcaccctcgac 690
>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full insert sequence Length = 2851 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 413 tccgagttcttcctcaagaccatcaccctcgac 445 |||||||||||||||||||| ||||||||||| Sbjct: 336 tccgagttcttcctcaagacgctcaccctcgac 368
>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full insert sequence Length = 3167 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 413 tccgagttcttcctcaagaccatcaccctcgac 445 |||||||||||||||||||| ||||||||||| Sbjct: 665 tccgagttcttcctcaagacgctcaccctcgac 697
>gb|AC109929.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0093J03, complete sequence Length = 200626 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 416 gagttcttcctcaagaccatcaccctcgaca 446 ||||||||| |||| |||||||||||||||| Sbjct: 134348 gagttcttcgtcaacaccatcaccctcgaca 134378
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 416 gagttcttcctcaagaccatcaccctcgaca 446 ||||||||| |||| |||||||||||||||| Sbjct: 20827287 gagttcttcgtcaacaccatcaccctcgaca 20827317
>dbj|AK102084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082M03, full insert sequence Length = 2930 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 416 gagttcttcctcaagaccatcaccctcgaca 446 ||||||||| |||| |||||||||||||||| Sbjct: 417 gagttcttcgtcaacaccatcaccctcgaca 447
>dbj|AK073570.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046P13, full insert sequence Length = 3010 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 416 gagttcttcctcaagaccatcaccctcgaca 446 ||||||||| |||| |||||||||||||||| Sbjct: 417 gagttcttcgtcaacaccatcaccctcgaca 447
>gb|AY103567.1| Zea mays PCO116252 mRNA sequence Length = 3135 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 414 ccgagttcttcctcaagaccatcaccctcga 444 ||||||||||||||||||| |||||||||| Sbjct: 608 ccgagttcttcctcaagacgctcaccctcga 638
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 416 gagttcttcctcaagaccatcaccctcgaca 446 ||||||||| |||| |||||||||||||||| Sbjct: 21137522 gagttcttcgtcaacaccatcaccctcgaca 21137552
>gb|AE005807.1| Caulobacter crescentus CB15 section 133 of 359 of the complete genome Length = 8803 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 136 cgcgctcgacttcaacgacttcggcg 161 ||||| |||||||||||||||||||| Sbjct: 4469 cgcgcacgacttcaacgacttcggcg 4494
>ref|NM_003028.1| Homo sapiens Src homology 2 domain containing adaptor protein B (SHB), mRNA Length = 2306 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 cggggggcctccggggcgccc 119 ||||||||||||||||||||| Sbjct: 469 cggggggcctccggggcgccc 449
>gb|AY596511.1| Helicosporidium sp. ex Simulium jonesii gamma-carbonic anhydrase mRNA, partial cds Length = 775 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 157 cggcgccaccgtcatggacggcgtcaccg 185 ||||||||| ||||||||||||| ||||| Sbjct: 400 cggcgccacggtcatggacggcgccaccg 428
>emb|X75342.1|HSSHB H.sapiens SHB mRNA Length = 2306 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 cggggggcctccggggcgccc 119 ||||||||||||||||||||| Sbjct: 469 cggggggcctccggggcgccc 449
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13 map near C50029S, complete sequence Length = 129900 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgag 90 |||||||||||||||||||| Sbjct: 52268 ggcgtcggcggcatcgtgag 52287
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 340 cgccgtcaccttcgactggtcggtggac 367 ||||| ||||||||| |||||||||||| Sbjct: 3465594 cgccggcaccttcgaatggtcggtggac 3465621
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 gctcctgccgacgaacctgc 311 |||||||||||||||||||| Sbjct: 137505 gctcctgccgacgaacctgc 137486
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 306 acctgccgttcatcaccaccggcg 329 ||||||||||||||| |||||||| Sbjct: 288875 acctgccgttcatcatcaccggcg 288852
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 306 acctgccgttcatcaccaccggcg 329 ||||||||||||||| |||||||| Sbjct: 153202 acctgccgttcatcatcaccggcg 153225
>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence Length = 236455 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 76 cggcggcatcgtgagcgacctgac 99 ||||||||||| |||||||||||| Sbjct: 205636 cggcggcatcgagagcgacctgac 205659
>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12 Length = 323450 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 cggcggcatcgtgagcgacctgac 99 ||||||||||| |||||||||||| Sbjct: 80122 cggcggcatcgagagcgacctgac 80099
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 ggtgccgggcgccatcatcg 395 |||||||||||||||||||| Sbjct: 608859 ggtgccgggcgccatcatcg 608840
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 agctcctcggccgcggcgtc 205 |||||||||||||||||||| Sbjct: 1962239 agctcctcggccgcggcgtc 1962220
>gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hospital Oakland Research Institute) complete sequence Length = 228052 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 agctcatcagctccaccaac 232 |||||||||||||||||||| Sbjct: 82121 agctcatcagctccaccaac 82102
>ref|XM_967239.1| PREDICTED: Tribolium castaneum similar to CG11980-PC, isoform C (LOC661050), mRNA Length = 1156 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 caccaacgtcgaccacaaca 245 |||||||||||||||||||| Sbjct: 239 caccaacgtcgaccacaaca 220
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 gccgttcatcaccaccggcg 329 |||||||||||||||||||| Sbjct: 1867059 gccgttcatcaccaccggcg 1867040
>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128559 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgag 90 |||||||||||||||||||| Sbjct: 103984 ggcgtcggcggcatcgtgag 104003
>gb|AC079160.5| Homo sapiens BAC clone RP11-176K15 from 4, complete sequence Length = 147727 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 acctggagcagtggctcctg 298 |||||||||||||||||||| Sbjct: 78731 acctggagcagtggctcctg 78750
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 tcggcgccaccgtcatggacggcg 179 ||||||||| |||||||||||||| Sbjct: 2990742 tcggcgccatcgtcatggacggcg 2990719
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 71 ggcgtcggcggcatcgtgagcgac 94 |||||||||||||||||| ||||| Sbjct: 5079435 ggcgtcggcggcatcgtgcgcgac 5079412
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgagcgac 94 |||||||||||||||||| ||||| Sbjct: 590306 ggcgtcggcggcatcgtgcgcgac 590329 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 tgcgcaagaacgcgctcgacttca 149 ||||||||||| |||||||||||| Sbjct: 206796 tgcgcaagaacccgctcgacttca 206773
>dbj|AK109329.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B01, full insert sequence Length = 1556 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 ggcgtcggcggcatcgtgag 90 |||||||||||||||||||| Sbjct: 613 ggcgtcggcggcatcgtgag 594
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 172 ggacggcgtcaccgagctcctcggccgcggcg 203 ||||||||| | |||| ||||||||||||||| Sbjct: 1448865 ggacggcgtgatcgagttcctcggccgcggcg 1448834
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgagcgac 94 |||||||||||||||||| ||||| Sbjct: 657733 ggcgtcggcggcatcgtgcgcgac 657756 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,703,112 Number of Sequences: 3902068 Number of extensions: 2703112 Number of successful extensions: 60892 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59452 Number of HSP's gapped (non-prelim): 1432 length of query: 448 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 426 effective length of database: 17,147,199,772 effective search space: 7304707102872 effective search space used: 7304707102872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
