Clone Name | bastl25g04 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK121570.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033035J21, full insert sequence Length = 3743 Score = 238 bits (120), Expect = 1e-59 Identities = 363/444 (81%) Strand = Plus / Plus Query: 3 aagaaagcaaatctcattggaaccctcaaggatgctgcaagtgaggctgttggttctgat 62 |||||||||||||||||||| ||||||||| | ||||||| ||| ||||||||| ||||| Sbjct: 516 aagaaagcaaatctcattggcaccctcaagaaggctgcaaatgatgctgttggtgctgat 575 Query: 63 attgtcttgcatgtcaaaagcaagaatggggatggcattgacctgacggatgaaatactg 122 |||||||||||||| ||| ||||||| ||| ||| | | | ||| || ||| || Sbjct: 576 attgtcttgcatgtgaaagctaagaatgacagtggtgttggcttaatggaggacatagtg 635 Query: 123 cgtgctgtttctgctcagtcgaaatctggcactccagttgttggtcacattgcaaaagag 182 |||||||| | ||||||||| ||||| | ||| ||||||||||||| ||||||||| Sbjct: 636 cgtgctgtctgtgctcagtcaaaatcagatgacccaattgttggtcacatcgcaaaagag 695 Query: 183 gcacctgagggtaagctccttgaaacatgggcagaaaagttatctggtggatctgtacaa 242 |||||||||||||||||||||||| | |||||||| || || ||| | |||||| ||| Sbjct: 696 gcacctgagggtaagctccttgaagcttgggcagacaaattgtctagctcatctgtgcaa 755 Query: 243 cttgcagacgtaacacaagggttttctgagctttttgctgtgaaagacgccccagagatc 302 ||| |||| |||| | || |||||||||||||||||| |||| || || |||||||| Sbjct: 756 cttacagatataacgaatggcttttctgagctttttgctatgaaggatacctcagagatc 815 Query: 303 atatgtgtgaagaaggctgcttacctaacttcatccgtgatgaaaaactttgtggtacca 362 | ||||||||||||||| | |||||||| ||||| || |||||||| |||||||| || Sbjct: 816 acatgtgtgaagaaggcctcctacctaacctcatctgtaatgaaaaattttgtggttccg 875 Query: 363 accatggagaagattattgatgaggagagaaaagtctcacactcctcattgatggatgac 422 | | |||||| | |||||||| ||||| ||||| ||||||| |||||||||||||| Sbjct: 876 aagctagagaaggtgattgatgaagagaggaaagtgacacactcttcattgatggatgag 935 Query: 423 acggagaaggttattcttgatcct 446 || || |||| ||||||||||||| Sbjct: 936 acagaaaaggctattcttgatcct 959
>ref|XM_471832.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3171 Score = 230 bits (116), Expect = 3e-57 Identities = 362/444 (81%) Strand = Plus / Plus Query: 3 aagaaagcaaatctcattggaaccctcaaggatgctgcaagtgaggctgttggttctgat 62 |||||||||||||||||||| ||||||||| | ||||||| ||| ||||||||| ||||| Sbjct: 286 aagaaagcaaatctcattggcaccctcaagaaggctgcaaatgatgctgttggtgctgat 345 Query: 63 attgtcttgcatgtcaaaagcaagaatggggatggcattgacctgacggatgaaatactg 122 |||||||||||||| ||| ||||||| ||| ||| | | | ||| || ||| || Sbjct: 346 attgtcttgcatgtgaaagctaagaatgacagtggtgttggcttaatggaggacatagtg 405 Query: 123 cgtgctgtttctgctcagtcgaaatctggcactccagttgttggtcacattgcaaaagag 182 |||||||| | ||||||||| ||||| | ||| ||||||||||||| ||||||||| Sbjct: 406 cgtgctgtctgtgctcagtcaaaatcagatgacccaattgttggtcacatcgcaaaagag 465 Query: 183 gcacctgagggtaagctccttgaaacatgggcagaaaagttatctggtggatctgtacaa 242 |||||||||||||||||||||||| | |||||||| || || ||| | |||||| ||| Sbjct: 466 gcacctgagggtaagctccttgaagcttgggcagacaaattgtctagctcatctgtgcaa 525 Query: 243 cttgcagacgtaacacaagggttttctgagctttttgctgtgaaagacgccccagagatc 302 ||| |||| |||| | || || ||||||||||||||| |||| || || |||||||| Sbjct: 526 cttacagatataacgaatggcttctctgagctttttgctatgaaggatacctcagagatc 585 Query: 303 atatgtgtgaagaaggctgcttacctaacttcatccgtgatgaaaaactttgtggtacca 362 | ||||||||||||||| | |||||||| ||||| || |||||||| |||||||| || Sbjct: 586 acatgtgtgaagaaggcctcctacctaacctcatctgtaatgaaaaattttgtggttccg 645 Query: 363 accatggagaagattattgatgaggagagaaaagtctcacactcctcattgatggatgac 422 | | |||||| | |||||||| ||||| ||||| ||||||| |||||||||||||| Sbjct: 646 aagctagagaaggtgattgatgaagagaggaaagtgacacactcttcattgatggatgag 705 Query: 423 acggagaaggttattcttgatcct 446 || || |||| ||||||||||||| Sbjct: 706 acagaaaaggctattcttgatcct 729
>emb|AL663005.3|OSJN00208 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0062H02, complete sequence Length = 166747 Score = 230 bits (116), Expect = 3e-57 Identities = 362/444 (81%) Strand = Plus / Plus Query: 3 aagaaagcaaatctcattggaaccctcaaggatgctgcaagtgaggctgttggttctgat 62 |||||||||||||||||||| ||||||||| | ||||||| ||| ||||||||| ||||| Sbjct: 9607 aagaaagcaaatctcattggcaccctcaagaaggctgcaaatgatgctgttggtgctgat 9666 Query: 63 attgtcttgcatgtcaaaagcaagaatggggatggcattgacctgacggatgaaatactg 122 |||||||||||||| ||| ||||||| ||| ||| | | | ||| || ||| || Sbjct: 9667 attgtcttgcatgtgaaagctaagaatgacagtggtgttggcttaatggaggacatagtg 9726 Query: 123 cgtgctgtttctgctcagtcgaaatctggcactccagttgttggtcacattgcaaaagag 182 |||||||| | ||||||||| ||||| | ||| ||||||||||||| ||||||||| Sbjct: 9727 cgtgctgtctgtgctcagtcaaaatcagatgacccaattgttggtcacatcgcaaaagag 9786 Query: 183 gcacctgagggtaagctccttgaaacatgggcagaaaagttatctggtggatctgtacaa 242 |||||||||||||||||||||||| | |||||||| || || ||| | |||||| ||| Sbjct: 9787 gcacctgagggtaagctccttgaagcttgggcagacaaattgtctagctcatctgtgcaa 9846 Query: 243 cttgcagacgtaacacaagggttttctgagctttttgctgtgaaagacgccccagagatc 302 ||| |||| |||| | || || ||||||||||||||| |||| || || |||||||| Sbjct: 9847 cttacagatataacgaatggcttctctgagctttttgctatgaaggatacctcagagatc 9906 Query: 303 atatgtgtgaagaaggctgcttacctaacttcatccgtgatgaaaaactttgtggtacca 362 | ||||||||||||||| | |||||||| ||||| || |||||||| |||||||| || Sbjct: 9907 acatgtgtgaagaaggcctcctacctaacctcatctgtaatgaaaaattttgtggttccg 9966 Query: 363 accatggagaagattattgatgaggagagaaaagtctcacactcctcattgatggatgac 422 | | |||||| | |||||||| ||||| ||||| ||||||| |||||||||||||| Sbjct: 9967 aagctagagaaggtgattgatgaagagaggaaagtgacacactcttcattgatggatgag 10026 Query: 423 acggagaaggttattcttgatcct 446 || || |||| ||||||||||||| Sbjct: 10027 acagaaaaggctattcttgatcct 10050
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 230 bits (116), Expect = 3e-57 Identities = 362/444 (81%) Strand = Plus / Plus Query: 3 aagaaagcaaatctcattggaaccctcaaggatgctgcaagtgaggctgttggttctgat 62 |||||||||||||||||||| ||||||||| | ||||||| ||| ||||||||| ||||| Sbjct: 14852869 aagaaagcaaatctcattggcaccctcaagaaggctgcaaatgatgctgttggtgctgat 14852928 Query: 63 attgtcttgcatgtcaaaagcaagaatggggatggcattgacctgacggatgaaatactg 122 |||||||||||||| ||| ||||||| ||| ||| | | | ||| || ||| || Sbjct: 14852929 attgtcttgcatgtgaaagctaagaatgacagtggtgttggcttaatggaggacatagtg 14852988 Query: 123 cgtgctgtttctgctcagtcgaaatctggcactccagttgttggtcacattgcaaaagag 182 |||||||| | ||||||||| ||||| | ||| ||||||||||||| ||||||||| Sbjct: 14852989 cgtgctgtctgtgctcagtcaaaatcagatgacccaattgttggtcacatcgcaaaagag 14853048 Query: 183 gcacctgagggtaagctccttgaaacatgggcagaaaagttatctggtggatctgtacaa 242 |||||||||||||||||||||||| | |||||||| || || ||| | |||||| ||| Sbjct: 14853049 gcacctgagggtaagctccttgaagcttgggcagacaaattgtctagctcatctgtgcaa 14853108 Query: 243 cttgcagacgtaacacaagggttttctgagctttttgctgtgaaagacgccccagagatc 302 ||| |||| |||| | || || ||||||||||||||| |||| || || |||||||| Sbjct: 14853109 cttacagatataacgaatggcttctctgagctttttgctatgaaggatacctcagagatc 14853168 Query: 303 atatgtgtgaagaaggctgcttacctaacttcatccgtgatgaaaaactttgtggtacca 362 | ||||||||||||||| | |||||||| ||||| || |||||||| |||||||| || Sbjct: 14853169 acatgtgtgaagaaggcctcctacctaacctcatctgtaatgaaaaattttgtggttccg 14853228 Query: 363 accatggagaagattattgatgaggagagaaaagtctcacactcctcattgatggatgac 422 | | |||||| | |||||||| ||||| ||||| ||||||| |||||||||||||| Sbjct: 14853229 aagctagagaaggtgattgatgaagagaggaaagtgacacactcttcattgatggatgag 14853288 Query: 423 acggagaaggttattcttgatcct 446 || || |||| ||||||||||||| Sbjct: 14853289 acagaaaaggctattcttgatcct 14853312
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 159 bits (80), Expect = 1e-35 Identities = 236/287 (82%), Gaps = 2/287 (0%) Strand = Plus / Plus Query: 160 ttgttggtcacattgcaaaagaggcacctgagggtaagctccttgaaacatgggcagaaa 219 ||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||| | Sbjct: 19307979 ttgttggtcacatcgcaaaagaggcacctgagggtaagctccttgaagcttgggcagaca 19308038 Query: 220 agttatctggtggatctgtacaacttgcagacgtaacacaagggttttctgagctttttg 279 | || ||| | |||||| |||||| |||| |||| | || || ||||||||||||| Sbjct: 19308039 aattgtctagctcatctgtgcaacttacagatataacgaatggcttctctgagctttttg 19308098 Query: 280 ctgtgaaagacgccccagagatcatatgtgtgaagaaggctgcttacctaacttcatccg 339 || |||| || || ||||||||| | |||||||||||| | |||||||| ||||| | Sbjct: 19308099 ctatgaaggatacctcagagatcaca--tgtgaagaaggcctcctacctaacctcatctg 19308156 Query: 340 tgatgaaaaactttgtggtaccaaccatggagaagattattgatgaggagagaaaagtct 399 | |||||||| |||||||| || | | |||||| | |||||||| ||||| ||||| Sbjct: 19308157 taatgaaaaattttgtggttccgaagctagagaaggtgattgatgaagagaggaaagtga 19308216 Query: 400 cacactcctcattgatggatgacacggagaaggttattcttgatcct 446 ||||||| |||||||||||||| || || |||| ||||||||||||| Sbjct: 19308217 cacactcttcattgatggatgagacagaaaaggctattcttgatcct 19308263 Score = 85.7 bits (43), Expect = 1e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 3 aagaaagcaaatctcattggaaccctcaaggatgctgcaagtgaggctgttggttctgat 62 |||||||||||||||||||| ||||||||| | ||| ||| ||| ||||||||| ||||| Sbjct: 19307822 aagaaagcaaatctcattggcaccctcaagaaggcttcaaatgatgctgttggtgctgat 19307881 Query: 63 attgtcttgca 73 ||||||||||| Sbjct: 19307882 attgtcttgca 19307892
>dbj|AP004636.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0685B10 Length = 148544 Score = 159 bits (80), Expect = 1e-35 Identities = 236/287 (82%), Gaps = 2/287 (0%) Strand = Plus / Plus Query: 160 ttgttggtcacattgcaaaagaggcacctgagggtaagctccttgaaacatgggcagaaa 219 ||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||| | Sbjct: 37422 ttgttggtcacatcgcaaaagaggcacctgagggtaagctccttgaagcttgggcagaca 37481 Query: 220 agttatctggtggatctgtacaacttgcagacgtaacacaagggttttctgagctttttg 279 | || ||| | |||||| |||||| |||| |||| | || || ||||||||||||| Sbjct: 37482 aattgtctagctcatctgtgcaacttacagatataacgaatggcttctctgagctttttg 37541 Query: 280 ctgtgaaagacgccccagagatcatatgtgtgaagaaggctgcttacctaacttcatccg 339 || |||| || || ||||||||| | |||||||||||| | |||||||| ||||| | Sbjct: 37542 ctatgaaggatacctcagagatcaca--tgtgaagaaggcctcctacctaacctcatctg 37599 Query: 340 tgatgaaaaactttgtggtaccaaccatggagaagattattgatgaggagagaaaagtct 399 | |||||||| |||||||| || | | |||||| | |||||||| ||||| ||||| Sbjct: 37600 taatgaaaaattttgtggttccgaagctagagaaggtgattgatgaagagaggaaagtga 37659 Query: 400 cacactcctcattgatggatgacacggagaaggttattcttgatcct 446 ||||||| |||||||||||||| || || |||| ||||||||||||| Sbjct: 37660 cacactcttcattgatggatgagacagaaaaggctattcttgatcct 37706 Score = 85.7 bits (43), Expect = 1e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 3 aagaaagcaaatctcattggaaccctcaaggatgctgcaagtgaggctgttggttctgat 62 |||||||||||||||||||| ||||||||| | ||| ||| ||| ||||||||| ||||| Sbjct: 37265 aagaaagcaaatctcattggcaccctcaagaaggcttcaaatgatgctgttggtgctgat 37324 Query: 63 attgtcttgca 73 ||||||||||| Sbjct: 37325 attgtcttgca 37335
>dbj|AP003872.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1118_A03 Length = 109873 Score = 159 bits (80), Expect = 1e-35 Identities = 236/287 (82%), Gaps = 2/287 (0%) Strand = Plus / Plus Query: 160 ttgttggtcacattgcaaaagaggcacctgagggtaagctccttgaaacatgggcagaaa 219 ||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||| | Sbjct: 80992 ttgttggtcacatcgcaaaagaggcacctgagggtaagctccttgaagcttgggcagaca 81051 Query: 220 agttatctggtggatctgtacaacttgcagacgtaacacaagggttttctgagctttttg 279 | || ||| | |||||| |||||| |||| |||| | || || ||||||||||||| Sbjct: 81052 aattgtctagctcatctgtgcaacttacagatataacgaatggcttctctgagctttttg 81111 Query: 280 ctgtgaaagacgccccagagatcatatgtgtgaagaaggctgcttacctaacttcatccg 339 || |||| || || ||||||||| | |||||||||||| | |||||||| ||||| | Sbjct: 81112 ctatgaaggatacctcagagatcaca--tgtgaagaaggcctcctacctaacctcatctg 81169 Query: 340 tgatgaaaaactttgtggtaccaaccatggagaagattattgatgaggagagaaaagtct 399 | |||||||| |||||||| || | | |||||| | |||||||| ||||| ||||| Sbjct: 81170 taatgaaaaattttgtggttccgaagctagagaaggtgattgatgaagagaggaaagtga 81229 Query: 400 cacactcctcattgatggatgacacggagaaggttattcttgatcct 446 ||||||| |||||||||||||| || || |||| ||||||||||||| Sbjct: 81230 cacactcttcattgatggatgagacagaaaaggctattcttgatcct 81276 Score = 85.7 bits (43), Expect = 1e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 3 aagaaagcaaatctcattggaaccctcaaggatgctgcaagtgaggctgttggttctgat 62 |||||||||||||||||||| ||||||||| | ||| ||| ||| ||||||||| ||||| Sbjct: 80835 aagaaagcaaatctcattggcaccctcaagaaggcttcaaatgatgctgttggtgctgat 80894 Query: 63 attgtcttgca 73 ||||||||||| Sbjct: 80895 attgtcttgca 80905
>gb|AF545812.1| Zea mays global transcription factor group C 102 (gtc102) mRNA, complete cds Length = 3505 Score = 145 bits (73), Expect = 1e-31 Identities = 148/173 (85%) Strand = Plus / Plus Query: 267 tctgagctttttgctgtgaaagacgccccagagatcatatgtgtgaagaaggctgcttac 326 |||||||| ||||||||||| ||| || ||||||||| |||||||||||||||||||||| Sbjct: 548 tctgagctctttgctgtgaaggacaccacagagatcacatgtgtgaagaaggctgcttac 607 Query: 327 ctaacttcatccgtgatgaaaaactttgtggtaccaaccatggagaagattattgatgag 386 ||||||||||||| ||||||| |||||| | || | |||||||| |||| |||||| Sbjct: 608 ttaacttcatccgttctgaaaaattttgtgattcctaagttggagaaggttatcgatgag 667 Query: 387 gagagaaaagtctcacactcctcattgatggatgacacggagaaggttattct 439 |||| ||||||||||||| || |||||||||||| | ||||||| |||||| Sbjct: 668 gagaaggaagtctcacactcatcgttgatggatgacgcagagaaggctattct 720 Score = 113 bits (57), Expect = 5e-22 Identities = 186/229 (81%) Strand = Plus / Plus Query: 1 agaagaaagcaaatctcattggaaccctcaaggatgctgcaagtgaggctgttggttctg 60 ||||||||| |||||| ||||| ||||||||| | ||||||| |||||||||||| || Sbjct: 282 agaagaaaggaaatcttattgggaccctcaagaaggctgcaaacgaggctgttggtgttg 341 Query: 61 atattgtcttgcatgtcaaaagcaagaatggggatggcattgacctgacggatgaaatac 120 | ||||| |||||||| |||| ||||||| | ||||| |||| ||| |||||| ||| Sbjct: 342 acattgtgttgcatgtgaaaaccaagaatagtgatggtgctgacttgatggatgacatag 401 Query: 121 tgcgtgctgtttctgctcagtcgaaatctggcactccagttgttggtcacattgcaaaag 180 ||| ||||| | | ||| || ||||| | | ||||||||||| ||||| || |||| Sbjct: 402 tgcatgctgctcgtaatcaatcaaaatcagataagccagttgttggacacatagccaaag 461 Query: 181 aggcacctgagggtaagctccttgaaacatgggcagaaaagttatctgg 229 ||||||||||||||||||| |||||||||||| | |||| |||||||| Sbjct: 462 aggcacctgagggtaagcttcttgaaacatggataaaaaaattatctgg 510
>emb|AL663021.4|OSJN00218 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041M06, complete sequence Length = 107014 Score = 135 bits (68), Expect = 1e-28 Identities = 170/204 (83%) Strand = Plus / Plus Query: 3 aagaaagcaaatctcattggaaccctcaaggatgctgcaagtgaggctgttggttctgat 62 |||||||||||||||||||| ||||||||| | ||||||| ||| ||||||||| ||||| Sbjct: 106807 aagaaagcaaatctcattggcaccctcaagaaggctgcaaatgatgctgttggtgctgat 106866 Query: 63 attgtcttgcatgtcaaaagcaagaatggggatggcattgacctgacggatgaaatactg 122 |||||||||||||| ||| ||||||| ||| ||| | | | ||| || ||| || Sbjct: 106867 attgtcttgcatgtgaaagctaagaatgacagtggtgttggcttaatggaggacatagtg 106926 Query: 123 cgtgctgtttctgctcagtcgaaatctggcactccagttgttggtcacattgcaaaagag 182 |||||||| | ||||||||| ||||| | ||| ||||||||||||| ||||||||| Sbjct: 106927 cgtgctgtctgtgctcagtcaaaatcagatgacccaattgttggtcacatcgcaaaagag 106986 Query: 183 gcacctgagggtaagctccttgaa 206 |||||||||||||||||||||||| Sbjct: 106987 gcacctgagggtaagctccttgaa 107010
>gb|AF040651.2| Caenorhabditis elegans cosmid W04H10, complete sequence Length = 16137 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 3 aagaaagcaaatctcattggaa 24 |||||||||||||||||||||| Sbjct: 14799 aagaaagcaaatctcattggaa 14820
>gb|DQ103595.1| Arabidopsis arenosa clone BAC 28N14, complete sequence Length = 132056 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 359 accaaccatggagaagattat 379 ||||||||||||||||||||| Sbjct: 14067 accaaccatggagaagattat 14047
>gb|DP000022.1| Microcebus murinus target 1 genomic scaffold Length = 1595145 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 172 ttgcaaaagaggcacctgagg 192 ||||||||||||||||||||| Sbjct: 544363 ttgcaaaagaggcacctgagg 544383
>gb|AC145439.4| Microcebus murinus clone CH257-441K3, complete sequence Length = 215533 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 172 ttgcaaaagaggcacctgagg 192 ||||||||||||||||||||| Sbjct: 186404 ttgcaaaagaggcacctgagg 186424
>ref|XM_508303.1| PREDICTED: Pan troglodytes similar to RIKEN cDNA 3830422K02 (LOC451046), mRNA Length = 998 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 gttggttctgatattgtctt 70 |||||||||||||||||||| Sbjct: 843 gttggttctgatattgtctt 862
>gb|AC169994.1| Rhesus Macaque BAC CH250-169F18 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 169688 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 205 aaacatgggcagaaaagttatctg 228 |||||||||||||||| ||||||| Sbjct: 55144 aaacatgggcagaaaatttatctg 55167
>gb|AC008348.5| Drosophila melanogaster clone BACR02I11, complete sequence Length = 191467 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 aaccctcaaggatgctgcaa 42 |||||||||||||||||||| Sbjct: 142784 aaccctcaaggatgctgcaa 142765
>gb|AC008203.8| Drosophila melanogaster clone BACR29F06, complete sequence Length = 174729 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cactccagttgttggtcaca 171 |||||||||||||||||||| Sbjct: 117488 cactccagttgttggtcaca 117507
>gb|AC005714.11| Drosophila melanogaster clone BACR48M13, complete sequence Length = 177736 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 aaccctcaaggatgctgcaa 42 |||||||||||||||||||| Sbjct: 49080 aaccctcaaggatgctgcaa 49061
>ref|XM_544498.2| PREDICTED: Canis familiaris similar to myomesin family, member 3 (LOC487372), mRNA Length = 4350 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 ctgtgaaagacgccccagag 299 |||||||||||||||||||| Sbjct: 1874 ctgtgaaagacgccccagag 1893
>gb|AF466596.1| Aedes aegypti isolate AEA_CLU25 putative secreted protein mRNA, complete cds Length = 1035 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 ctgtttctgctcagtcgaaa 146 |||||||||||||||||||| Sbjct: 847 ctgtttctgctcagtcgaaa 828
>emb|BX908755.10| Zebrafish DNA sequence from clone DKEY-67F11 in linkage group 3, complete sequence Length = 160005 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 agaagaaagcaaatctcatt 20 |||||||||||||||||||| Sbjct: 31160 agaagaaagcaaatctcatt 31141
>gb|AC104361.3| Homo sapiens chromosome 11, clone RP11-950A3, complete sequence Length = 145172 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 gttggttctgatattgtctt 70 |||||||||||||||||||| Sbjct: 109157 gttggttctgatattgtctt 109138
>gb|AC099340.3| Homo sapiens BAC clone RP11-214O14 from 4, complete sequence Length = 164958 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 266 ttctgagctttttgctgtgaaaga 289 ||||| |||||||||||||||||| Sbjct: 14090 ttctgtgctttttgctgtgaaaga 14067
>ref|NM_142974.2| Drosophila melanogaster CG17786-RA (CG17786), mRNA Length = 4094 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 cactccagttgttggtcaca 171 |||||||||||||||||||| Sbjct: 762 cactccagttgttggtcaca 743
>gb|AC104825.4| Homo sapiens BAC clone RP11-774O3 from 4, complete sequence Length = 134369 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 gttttctgagctttttgctg 282 |||||||||||||||||||| Sbjct: 7751 gttttctgagctttttgctg 7732
>gb|AY070899.1| Drosophila melanogaster RE01338 full length cDNA Length = 4102 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 cactccagttgttggtcaca 171 |||||||||||||||||||| Sbjct: 763 cactccagttgttggtcaca 744
>emb|BX931837.2| Gallus gallus finished cDNA, clone ChEST553g9 Length = 977 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 ggtggatctgtacaacttgcagac 251 ||||| |||||||||||||||||| Sbjct: 4 ggtggctctgtacaacttgcagac 27
>gb|AF003529.2| Homo sapiens glypican 3 (GPC3) gene, partial cds and flanking repeat regions Length = 165658 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 gttggtcacattgcaaaaga 181 |||||||||||||||||||| Sbjct: 49290 gttggtcacattgcaaaaga 49309
>gb|AE003746.3| Drosophila melanogaster chromosome 3R, section 84 of 118 of the complete sequence Length = 218498 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cactccagttgttggtcaca 171 |||||||||||||||||||| Sbjct: 186105 cactccagttgttggtcaca 186124
>gb|AE003457.4| Drosophila melanogaster chromosome 2R, section 65 of 73 of the complete sequence Length = 307324 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 aaccctcaaggatgctgcaa 42 |||||||||||||||||||| Sbjct: 84083 aaccctcaaggatgctgcaa 84064
>dbj|AP001107.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-867G23, complete sequences Length = 196662 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 agatcatatgtgtgaagaag 317 |||||||||||||||||||| Sbjct: 33997 agatcatatgtgtgaagaag 33978
>emb|BX908786.9| Zebrafish DNA sequence from clone CH211-13O8 in linkage group 3, complete sequence Length = 121030 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 agaagaaagcaaatctcatt 20 |||||||||||||||||||| Sbjct: 75484 agaagaaagcaaatctcatt 75503
>gb|AC148321.7| Mus musculus BAC clone RP24-512H17 from 19, complete sequence Length = 210790 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 gggttttctgagctttttgc 280 |||||||||||||||||||| Sbjct: 38287 gggttttctgagctttttgc 38268
>gb|U44469.1|HIVU44469 Human immunodeficiency virus type 1 nef mRNA, complete cds, patient #D, clone 18 Length = 894 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 gatggatgacacggagaagg 432 |||||||||||||||||||| Sbjct: 605 gatggatgacacggagaagg 624
>emb|AL833800.6| Mouse DNA sequence from clone RP23-147P20 on chromosome X, complete sequence Length = 199542 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 tctgatattgtcttgcatgt 76 |||||||||||||||||||| Sbjct: 70169 tctgatattgtcttgcatgt 70188 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,245,638 Number of Sequences: 3902068 Number of extensions: 4245638 Number of successful extensions: 117065 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 116928 Number of HSP's gapped (non-prelim): 119 length of query: 452 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 430 effective length of database: 17,147,199,772 effective search space: 7373295901960 effective search space used: 7373295901960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)