ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl25f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 66 4e-08
2dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic D... 66 4e-08
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 64 2e-07
4dbj|AP005652.3| Oryza sativa (japonica cultivar-group) genomic D... 64 2e-07
5dbj|AP004991.3| Oryza sativa (japonica cultivar-group) genomic D... 64 2e-07
6dbj|AK073793.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
7gb|AF466199.1| Sorghum bicolor putative receptor protein kinase,... 54 2e-04
8gb|AY530952.1| Zea mays unknown (Z576C20.2), putative heme oxyge... 52 6e-04
9emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 44 0.15
10gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 2.4
11ref|XM_472483.1| Oryza sativa (japonica cultivar-group), predic... 38 9.5
12gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 38 9.5
13gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 38 9.5
14emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4,... 38 9.5
15emb|AL662944.3|OSJN00134 Oryza sativa genomic DNA, chromosome 4,... 38 9.5
16dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.5
17dbj|AK108092.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 9.5
18gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 38 9.5
19emb|CT033772.6| Mouse DNA sequence from clone RP23-144A16 on chr... 38 9.5

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                            
Query: 121      acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 180
                ||||| |||||||||||||| ||||||||| |||  ||||||| ||||||||| ||| ||
Sbjct: 32901846 acgctactggagatcaagaagtccttccgcaatgtggacaacgtgctgtacgattgggcc 32901905

                     
Query: 181      ggcga 185
                |||||
Sbjct: 32901906 ggcga 32901910



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>dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1534_E09
          Length = 126209

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                         
Query: 121   acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 180
             ||||| |||||||||||||| ||||||||| |||  ||||||| ||||||||| ||| ||
Sbjct: 56587 acgctactggagatcaagaagtccttccgcaatgtggacaacgtgctgtacgattgggcc 56646

                  
Query: 181   ggcga 185
             |||||
Sbjct: 56647 ggcga 56651



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                           
Query: 121     acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 180
               |||||||||||||||||||| ||||||||| |||  |||||||  |||||||| ||| ||
Sbjct: 5261373 acgctgctggagatcaagaagtccttccgcaatgtggacaacgtactgtacgattgggcc 5261314

                   
Query: 181     ggcg 184
               ||||
Sbjct: 5261313 ggcg 5261310



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>dbj|AP005652.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBb0015B15
          Length = 123083

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                        
Query: 121  acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 180
            |||||||||||||||||||| ||||||||| |||  |||||||  |||||||| ||| ||
Sbjct: 2885 acgctgctggagatcaagaagtccttccgcaatgtggacaacgtactgtacgattgggcc 2826

                
Query: 181  ggcg 184
            ||||
Sbjct: 2825 ggcg 2822



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>dbj|AP004991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0016O19
          Length = 169120

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                          
Query: 121    acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 180
              |||||||||||||||||||| ||||||||| |||  |||||||  |||||||| ||| ||
Sbjct: 128095 acgctgctggagatcaagaagtccttccgcaatgtggacaacgtactgtacgattgggcc 128036

                  
Query: 181    ggcg 184
              ||||
Sbjct: 128035 ggcg 128032



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>dbj|AK073793.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070P05, full
           insert sequence
          Length = 3673

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                       
Query: 121 acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 180
           |||||||||||||||||||| ||||||||| |||  |||||||  |||||||| ||| ||
Sbjct: 456 acgctgctggagatcaagaagtccttccgcaatgtggacaacgtactgtacgattgggcc 515

               
Query: 181 ggcg 184
           ||||
Sbjct: 516 ggcg 519



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>gb|AF466199.1| Sorghum bicolor putative receptor protein kinase,
            aminoalcoholphosphotransferase, putative
            growth-regulating factor 1, putative GAG-POL precursor,
            putative GAG-POL precursor, putative RIRE2 orf3, putative
            anthocyanin regulatory C1, putative protein T30F21.6,
            putative copia polyprotein, putative copia polyprotein,
            putative protein NP_196765.1, and gb protein genes,
            complete cds; and putative zinc finger protein gene,
            partial cds
          Length = 144159

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                        
Query: 121  acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 180
            |||||| ||||||||||||| ||||||||| | | || |||||  |||||||| ||| ||
Sbjct: 7569 acgctggtggagatcaagaagtccttccgcaacgtcggcaacgtactgtacgattgggcc 7510

                   
Query: 181  ggcgacg 187
            |||||||
Sbjct: 7509 ggcgacg 7503



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>gb|AY530952.1| Zea mays unknown (Z576C20.2), putative heme oxygenase 1 (Z576C20.3),
              anthocyanin biosynthesis regulatory protein Pl1_B73
              (Z576C20.4), putative growth-regulating factor 1
              (Z576C20.6), and putative aminoalcoholphosphotransferase
              (Z576C20.14) genes, complete cds; and putative receptor
              protein kinase (Z576C20.21) gene, partial cds
          Length = 155173

 Score = 52.0 bits (26), Expect = 6e-04
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                          
Query: 122    cgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtccg 181
              ||||| ||||||||||||| ||||||||| | | || |||||  |||||||| ||| |||
Sbjct: 154331 cgctggtggagatcaagaagtccttccgcaacgtcggcaacgtactgtacgattgggccg 154390

                    
Query: 182    gcgacg 187
              ||||||
Sbjct: 154391 gcgacg 154396



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 147     ccgcgatgccgacaacgcgctg 168
               ||||||||||||||||||||||
Sbjct: 2214128 ccgcgatgccgacaacgcgctg 2214107



 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 156    cgacaacgcgctgtacgac 174
              |||||||||||||||||||
Sbjct: 121802 cgacaacgcgctgtacgac 121784



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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    ccgcgatgccgacaacgcgc 166
              ||||||||||||||||||||
Sbjct: 245630 ccgcgatgccgacaacgcgc 245611



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>ref|XM_472483.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 516

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 123 gctgctggagatcaagaaa 141
           |||||||||||||||||||
Sbjct: 228 gctgctggagatcaagaaa 246



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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 156     cgacaacgcgctgtacgac 174
               |||||||||||||||||||
Sbjct: 1249468 cgacaacgcgctgtacgac 1249450



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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 18      gcccgcgactgcccctgcg 36
               |||||||||||||||||||
Sbjct: 3319728 gcccgcgactgcccctgcg 3319746



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>emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0088C09,
            complete sequence
          Length = 96079

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 123  gctgctggagatcaagaaa 141
            |||||||||||||||||||
Sbjct: 4517 gctgctggagatcaagaaa 4535



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>emb|AL662944.3|OSJN00134 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0028I23,
              complete sequence
          Length = 148736

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 123    gctgctggagatcaagaaa 141
              |||||||||||||||||||
Sbjct: 148119 gctgctggagatcaagaaa 148137



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 123      gctgctggagatcaagaaa 141
                |||||||||||||||||||
Sbjct: 20901294 gctgctggagatcaagaaa 20901312



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>dbj|AK108092.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-A04, full
           insert sequence
          Length = 615

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 123 gctgctggagatcaagaaa 141
           |||||||||||||||||||
Sbjct: 259 gctgctggagatcaagaaa 277



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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 156     cgacaacgcgctgtacgac 174
               |||||||||||||||||||
Sbjct: 2966879 cgacaacgcgctgtacgac 2966897



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>emb|CT033772.6| Mouse DNA sequence from clone RP23-144A16 on chromosome 17, complete
            sequence
          Length = 214867

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 130  gagatcaagaaatccttcc 148
            |||||||||||||||||||
Sbjct: 5891 gagatcaagaaatccttcc 5873


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 515,088
Number of Sequences: 3902068
Number of extensions: 515088
Number of successful extensions: 33045
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32708
Number of HSP's gapped (non-prelim): 337
length of query: 192
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 170
effective length of database: 17,147,199,772
effective search space: 2915023961240
effective search space used: 2915023961240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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