Clone Name | bastl25f12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 65.9 bits (33), Expect = 4e-08 Identities = 57/65 (87%) Strand = Plus / Plus Query: 121 acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 180 ||||| |||||||||||||| ||||||||| ||| ||||||| ||||||||| ||| || Sbjct: 32901846 acgctactggagatcaagaagtccttccgcaatgtggacaacgtgctgtacgattgggcc 32901905 Query: 181 ggcga 185 ||||| Sbjct: 32901906 ggcga 32901910
>dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1534_E09 Length = 126209 Score = 65.9 bits (33), Expect = 4e-08 Identities = 57/65 (87%) Strand = Plus / Plus Query: 121 acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 180 ||||| |||||||||||||| ||||||||| ||| ||||||| ||||||||| ||| || Sbjct: 56587 acgctactggagatcaagaagtccttccgcaatgtggacaacgtgctgtacgattgggcc 56646 Query: 181 ggcga 185 ||||| Sbjct: 56647 ggcga 56651
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 63.9 bits (32), Expect = 2e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 121 acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 180 |||||||||||||||||||| ||||||||| ||| ||||||| |||||||| ||| || Sbjct: 5261373 acgctgctggagatcaagaagtccttccgcaatgtggacaacgtactgtacgattgggcc 5261314 Query: 181 ggcg 184 |||| Sbjct: 5261313 ggcg 5261310
>dbj|AP005652.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0015B15 Length = 123083 Score = 63.9 bits (32), Expect = 2e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 121 acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 180 |||||||||||||||||||| ||||||||| ||| ||||||| |||||||| ||| || Sbjct: 2885 acgctgctggagatcaagaagtccttccgcaatgtggacaacgtactgtacgattgggcc 2826 Query: 181 ggcg 184 |||| Sbjct: 2825 ggcg 2822
>dbj|AP004991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0016O19 Length = 169120 Score = 63.9 bits (32), Expect = 2e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 121 acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 180 |||||||||||||||||||| ||||||||| ||| ||||||| |||||||| ||| || Sbjct: 128095 acgctgctggagatcaagaagtccttccgcaatgtggacaacgtactgtacgattgggcc 128036 Query: 181 ggcg 184 |||| Sbjct: 128035 ggcg 128032
>dbj|AK073793.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070P05, full insert sequence Length = 3673 Score = 63.9 bits (32), Expect = 2e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 121 acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 180 |||||||||||||||||||| ||||||||| ||| ||||||| |||||||| ||| || Sbjct: 456 acgctgctggagatcaagaagtccttccgcaatgtggacaacgtactgtacgattgggcc 515 Query: 181 ggcg 184 |||| Sbjct: 516 ggcg 519
>gb|AF466199.1| Sorghum bicolor putative receptor protein kinase, aminoalcoholphosphotransferase, putative growth-regulating factor 1, putative GAG-POL precursor, putative GAG-POL precursor, putative RIRE2 orf3, putative anthocyanin regulatory C1, putative protein T30F21.6, putative copia polyprotein, putative copia polyprotein, putative protein NP_196765.1, and gb protein genes, complete cds; and putative zinc finger protein gene, partial cds Length = 144159 Score = 54.0 bits (27), Expect = 2e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 121 acgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtcc 180 |||||| ||||||||||||| ||||||||| | | || ||||| |||||||| ||| || Sbjct: 7569 acgctggtggagatcaagaagtccttccgcaacgtcggcaacgtactgtacgattgggcc 7510 Query: 181 ggcgacg 187 ||||||| Sbjct: 7509 ggcgacg 7503
>gb|AY530952.1| Zea mays unknown (Z576C20.2), putative heme oxygenase 1 (Z576C20.3), anthocyanin biosynthesis regulatory protein Pl1_B73 (Z576C20.4), putative growth-regulating factor 1 (Z576C20.6), and putative aminoalcoholphosphotransferase (Z576C20.14) genes, complete cds; and putative receptor protein kinase (Z576C20.21) gene, partial cds Length = 155173 Score = 52.0 bits (26), Expect = 6e-04 Identities = 56/66 (84%) Strand = Plus / Plus Query: 122 cgctgctggagatcaagaaatccttccgcgatgccgacaacgcgctgtacgactggtccg 181 ||||| ||||||||||||| ||||||||| | | || ||||| |||||||| ||| ||| Sbjct: 154331 cgctggtggagatcaagaagtccttccgcaacgtcggcaacgtactgtacgattgggccg 154390 Query: 182 gcgacg 187 |||||| Sbjct: 154391 gcgacg 154396
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 44.1 bits (22), Expect = 0.15 Identities = 22/22 (100%) Strand = Plus / Minus Query: 147 ccgcgatgccgacaacgcgctg 168 |||||||||||||||||||||| Sbjct: 2214128 ccgcgatgccgacaacgcgctg 2214107 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 156 cgacaacgcgctgtacgac 174 ||||||||||||||||||| Sbjct: 121802 cgacaacgcgctgtacgac 121784
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 ccgcgatgccgacaacgcgc 166 |||||||||||||||||||| Sbjct: 245630 ccgcgatgccgacaacgcgc 245611
>ref|XM_472483.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 516 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 123 gctgctggagatcaagaaa 141 ||||||||||||||||||| Sbjct: 228 gctgctggagatcaagaaa 246
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 156 cgacaacgcgctgtacgac 174 ||||||||||||||||||| Sbjct: 1249468 cgacaacgcgctgtacgac 1249450
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 18 gcccgcgactgcccctgcg 36 ||||||||||||||||||| Sbjct: 3319728 gcccgcgactgcccctgcg 3319746
>emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0088C09, complete sequence Length = 96079 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 123 gctgctggagatcaagaaa 141 ||||||||||||||||||| Sbjct: 4517 gctgctggagatcaagaaa 4535
>emb|AL662944.3|OSJN00134 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0028I23, complete sequence Length = 148736 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 123 gctgctggagatcaagaaa 141 ||||||||||||||||||| Sbjct: 148119 gctgctggagatcaagaaa 148137
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 123 gctgctggagatcaagaaa 141 ||||||||||||||||||| Sbjct: 20901294 gctgctggagatcaagaaa 20901312
>dbj|AK108092.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-A04, full insert sequence Length = 615 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 123 gctgctggagatcaagaaa 141 ||||||||||||||||||| Sbjct: 259 gctgctggagatcaagaaa 277
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 156 cgacaacgcgctgtacgac 174 ||||||||||||||||||| Sbjct: 2966879 cgacaacgcgctgtacgac 2966897
>emb|CT033772.6| Mouse DNA sequence from clone RP23-144A16 on chromosome 17, complete sequence Length = 214867 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 130 gagatcaagaaatccttcc 148 ||||||||||||||||||| Sbjct: 5891 gagatcaagaaatccttcc 5873 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 515,088 Number of Sequences: 3902068 Number of extensions: 515088 Number of successful extensions: 33045 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32708 Number of HSP's gapped (non-prelim): 337 length of query: 192 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 170 effective length of database: 17,147,199,772 effective search space: 2915023961240 effective search space used: 2915023961240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)