ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl25f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AVP_HORVU (Q06572) Pyrophosphate-energized vacuolar membrane pro... 88 7e-18
2AVP_PHAAU (P21616) Pyrophosphate-energized vacuolar membrane pro... 56 3e-08
3AVP1_ARATH (P31414) Pyrophosphate-energized vacuolar membrane pr... 55 4e-08
4ACOD_PIG (O02858) Acyl-CoA desaturase (EC 1.14.19.1) (Stearoyl-C... 29 3.7

>AVP_HORVU (Q06572) Pyrophosphate-energized vacuolar membrane proton pump (EC|
           3.6.1.1) (Pyrophosphate-energized inorganic
           pyrophosphatase) (H(+)-PPase)
          Length = 762

 Score = 87.8 bits (216), Expect = 7e-18
 Identities = 44/44 (100%), Positives = 44/44 (100%)
 Frame = +1

Query: 103 MAILGELGTEILIPVCGVIGIVFAVAQWFIVSKVKVTPGAASAA 234
           MAILGELGTEILIPVCGVIGIVFAVAQWFIVSKVKVTPGAASAA
Sbjct: 1   MAILGELGTEILIPVCGVIGIVFAVAQWFIVSKVKVTPGAASAA 44



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>AVP_PHAAU (P21616) Pyrophosphate-energized vacuolar membrane proton pump (EC|
           3.6.1.1) (Pyrophosphate-energized inorganic
           pyrophosphatase) (H(+)-PPase) (Vacuolar
           H(+)-pyrophosphatase)
          Length = 764

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 26/36 (72%), Positives = 31/36 (86%)
 Frame = +1

Query: 106 AILGELGTEILIPVCGVIGIVFAVAQWFIVSKVKVT 213
           AIL +LGTEILIPVC VIGI FA+ QW +VSKVK++
Sbjct: 3   AILPDLGTEILIPVCAVIGIAFALFQWLLVSKVKLS 38



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>AVP1_ARATH (P31414) Pyrophosphate-energized vacuolar membrane proton pump 1|
           (EC 3.6.1.1) (Pyrophosphate-energized inorganic
           pyrophosphatase 1) (H(+)-PPase 1) (Vacuolar proton
           pyrophosphatase 1) (Vacuolar proton pyrophosphatase 3)
          Length = 770

 Score = 55.5 bits (132), Expect = 4e-08
 Identities = 26/48 (54%), Positives = 38/48 (79%), Gaps = 2/48 (4%)
 Frame = +1

Query: 94  LTAMAILGELGTEILIPVCGVIGIVFAVAQWFIVSKVKVTP--GAASA 231
           + A A+L EL TEIL+P+C VIGI F++ QW++VS+VK+T   GA+S+
Sbjct: 1   MVAPALLPELWTEILVPICAVIGIAFSLFQWYVVSRVKLTSDLGASSS 48



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>ACOD_PIG (O02858) Acyl-CoA desaturase (EC 1.14.19.1) (Stearoyl-CoA|
           desaturase) (Fatty acid desaturase)
           (Delta(9)-desaturase) (Fragment)
          Length = 334

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = +1

Query: 94  LTAMAILGELGTEILIPVCGVIGIVFAVAQWFIVSKVKVTPGA 222
           L ++  LG L   ILIP C +  +++A A ++++S V VT GA
Sbjct: 67  LMSLLHLGALYGIILIPTCKIYTLLWAFA-YYLLSAVGVTAGA 108


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,429,936
Number of Sequences: 219361
Number of extensions: 200731
Number of successful extensions: 611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 80,573,946
effective HSP length: 53
effective length of database: 68,947,813
effective search space used: 1654747512
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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