ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl25f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|D13472.2|BLYINOPP Hordeum vulgare mRNA for vacuolar membrane... 295 3e-77
2gb|AY296911.1| Triticum aestivum vacuolar proton-inorganic pyrop... 244 1e-61
3gb|AY103622.1| Zea mays PCO084888 mRNA sequence 62 8e-07
4gb|U31467.1|VRU31467 Vigna radiata pyrophosphatase mRNA, complet... 60 3e-06
5dbj|AB009077.1| Vigna radiata mRNA for proton pyrophosphatase, c... 60 3e-06
6dbj|AP006375.1| Lotus japonicus genomic DNA, chromosome 4, clone... 48 0.012
7gb|AY860110.1| Micromonospora rosaria strain SCC2095 plasmid pMR... 44 0.19
8emb|AL158052.10| Human DNA sequence from clone RP11-570J20 on ch... 44 0.19
9gb|AY255181.1| Hordeum brevisubulatum vacuolar proton-inorganic ... 44 0.19
10gb|AC006450.13|AC006450 Homo sapiens chromosome 9, clone RP11-85... 44 0.19
11gb|AY106681.1| Zea mays PCO136360 mRNA sequence 44 0.19
12dbj|AB032839.1| Hordeum vulgare HVP1 mRNA for vacuolar proton-in... 44 0.19
13ref|XM_475286.1| Oryza sativa (japonica cultivar-group), predic... 42 0.76
14gb|BT017002.1| Zea mays clone EK07D2309H12.c mRNA sequence 42 0.76
15gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.76
16gb|AC163391.4| Mus musculus chromosome 3, clone RP23-173N16, com... 42 0.76
17gb|CP000249.1| Frankia sp. CcI3, complete genome 42 0.76
18gb|AC102465.11| Mus musculus chromosome 3, clone RP24-333O23, co... 42 0.76
19dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.76
20gb|AC115041.15| Mus musculus chromosome 3, clone RP24-285A14, co... 42 0.76
21ref|XM_475908.1| Oryza sativa (japonica cultivar-group), predic... 40 3.0
22ref|XM_450641.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.0
23gb|AY022083.1| Oryza sativa microsatellite MRG4408 containing (T... 40 3.0
24gb|AC079936.7| Oryza sativa (japonica cultivar-group) chromosome... 40 3.0
25gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.0
26gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.0
27gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.0
28gb|BC024053.1| Mus musculus one cut domain, family member 1, mRN... 40 3.0
29gb|AC100600.22| Mus musculus chromosome 9, clone RP23-157H17, co... 40 3.0
30ref|NM_008262.2| Mus musculus one cut domain, family member 1 (O... 40 3.0
31emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 3.0
32emb|Z98981.3|SPAC6F6 S.pombe chromosome I cosmid c6F6 40 3.0
33emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 40 3.0
34emb|BX640426.1| Bordetella parapertussis strain 12822, complete ... 40 3.0
35emb|BX640418.1| Bordetella pertussis strain Tohama I, complete g... 40 3.0
36gb|AC091734.3| Genomic Sequence for Oryza sativa, Nipponbare str... 40 3.0
37gb|AC153857.7| Mus musculus 6 BAC RP23-158G17 (Roswell Park Canc... 40 3.0
38gb|AC103858.2| Homo sapiens chromosome 15, clone RP11-761I4, com... 40 3.0
39ref|NM_001019330.1| Schizosaccharomyces pombe 972h- hypothetical... 40 3.0
40gb|U95945.1|MMU95945 Mus musculus hepatocyte nuclear factor 6 (H... 40 3.0
41dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
42dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
43dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
44dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
45gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 3.0
46gb|AC092178.4| Homo sapiens BAC clone RP11-627I23 from 2, comple... 40 3.0
47gb|AC154430.3| Mus musculus BAC clone RP24-208K8 from chromosome... 40 3.0
48gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 3.0
49dbj|AP004650.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
50dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
51dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 3.0
52dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
53dbj|AK110121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.0
54gb|AF141325.2|HSINPPI2 Homo sapiens inositol polyphosphate 1-pho... 40 3.0
55dbj|AK066933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.0
56emb|X67030.1|SPRPS13G S.pombe rps13 gene for ribosomal protein S13 40 3.0
57emb|AL928581.8| Mouse DNA sequence from clone RP23-318H20 on chr... 40 3.0
58emb|CT025657.12| Mouse DNA sequence from clone RP23-342N19 on ch... 40 3.0
59dbj|AB012766.1| Oryza sativa gene for ovp2, complete cds 40 3.0
60gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.0
61dbj|D45384.1| Oryza sativa mRNA for vacuolar H+-pyrophosphatase,... 40 3.0 
>dbj|D13472.2|BLYINOPP Hordeum vulgare mRNA for vacuolar membrane proton-translocating
           inorganic pyrophosphatase, complete cds
          Length = 2649

 Score =  295 bits (149), Expect = 3e-77
 Identities = 155/157 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  cgtcggcctgccagcctgacagccatggcgatcctcggggagctcgggacggagatcctc 138
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cgtcggcctgccagccagacagccatggcgatcctcggggagctcgggacggagatcctc 60

                                                                       
Query: 139 atccccgtctgcggggtcatcggcatcgtcttcgccgtcgcgcagtggttcatcgtctcc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atccccgtctgcggggtcatcggcatcgtcttcgccgtcgcgcagtggttcatcgtctcc 120

                                                
Query: 199 aaggtcaaggtcaccccaggcgccgcctccgccgccg 235
           ||||||||||||||||| |||||||||||||||||||
Sbjct: 121 aaggtcaaggtcacccccggcgccgcctccgccgccg 157
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>gb|AY296911.1| Triticum aestivum vacuolar proton-inorganic pyrophosphatase mRNA,
           complete cds
          Length = 2671

 Score =  244 bits (123), Expect = 1e-61
 Identities = 132/135 (97%)
 Strand = Plus / Plus

                                                                       
Query: 101 ccatggcgatcctcggggagctcgggacggagatcctcatccccgtctgcggggtcatcg 160
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 29  ccatggcgatcctcggggagctcgggaccgagatcctcatccccgtctgcggggtcgtcg 88

                                                                       
Query: 161 gcatcgtcttcgccgtcgcgcagtggttcatcgtctccaaggtcaaggtcaccccaggcg 220
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 89  gcatcgtcttcgccgtcgcgcagtggttcatcgtctccaaggtcaaggtcacccccggcg 148

                          
Query: 221 ccgcctccgccgccg 235
           |||||||||||||||
Sbjct: 149 ccgcctccgccgccg 163
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>gb|AY103622.1| Zea mays PCO084888 mRNA sequence
          Length = 2801

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 73/87 (83%)
 Strand = Plus / Plus

                                                                       
Query: 100 gccatggcgatcctcggggagctcgggacggagatcctcatccccgtctgcggggtcatc 159
           |||||||||||||||  || |||||  || ||| | ||||||||||||  ||  ||||||
Sbjct: 88  gccatggcgatcctctcggcgctcgccaccgaggtgctcatccccgtcgccgccgtcatc 147

                                      
Query: 160 ggcatcgtcttcgccgtcgcgcagtgg 186
           ||||||| ||||||||||| |||||||
Sbjct: 148 ggcatcgccttcgccgtcgtgcagtgg 174
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>gb|U31467.1|VRU31467 Vigna radiata pyrophosphatase mRNA, complete cds
          Length = 2522

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 72/86 (83%)
 Strand = Plus / Plus

                                                                       
Query: 121 ctcgggacggagatcctcatccccgtctgcggggtcatcggcatcgtcttcgccgtcgcg 180
           ||||| || ||||| ||||| |||||||||| |||||| || |||| ||||||| ||   
Sbjct: 48  ctcggaaccgagattctcattcccgtctgcgcggtcattggaatcgccttcgccctcttc 107

                                     
Query: 181 cagtggttcatcgtctccaaggtcaa 206
           |||||| || ||||||||||||||||
Sbjct: 108 cagtggctcctcgtctccaaggtcaa 133
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>dbj|AB009077.1| Vigna radiata mRNA for proton pyrophosphatase, complete cds
          Length = 2531

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 72/86 (83%)
 Strand = Plus / Plus

                                                                       
Query: 121 ctcgggacggagatcctcatccccgtctgcggggtcatcggcatcgtcttcgccgtcgcg 180
           ||||| || ||||| ||||| |||||||||| |||||| || |||| ||||||| ||   
Sbjct: 38  ctcggaaccgagattctcattcccgtctgcgcggtcattggaatcgccttcgccctcttc 97

                                     
Query: 181 cagtggttcatcgtctccaaggtcaa 206
           |||||| || ||||||||||||||||
Sbjct: 98  cagtggctcctcgtctccaaggtcaa 123
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>dbj|AP006375.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT32M04, TM0219,
             complete sequence
          Length = 72880

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                         
Query: 142   cccgtctgcggggtcatcggcatcgtcttcgccgtcgcgcagtggttcatcgtctccaag 201
             ||||||||||  ||||| || |||||||||||  ||   ||||||||| |||||||||||
Sbjct: 38858 cccgtctgcgccgtcattggaatcgtcttcgctctcttccagtggttcctcgtctccaag 38917

                         
Query: 202   gtcaaggtcacc 213
             || ||| |||||
Sbjct: 38918 gttaagatcacc 38929
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>gb|AY860110.1| Micromonospora rosaria strain SCC2095 plasmid pMR2, complete sequence
          Length = 11188

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 39   cccaccccgcccgccgccgtccggtc 64
            ||||||||| ||||||||||||||||
Sbjct: 2374 cccaccccggccgccgccgtccggtc 2349
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>emb|AL158052.10| Human DNA sequence from clone RP11-570J20 on chromosome 9q33.1-34.12
             Contains three novel genes, the 3' end of the LHX2 gene
             for LIM homeobox protein 2 and four CpG islands, complete
             sequence
          Length = 221887

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 39    cccaccccgcccgccgccgtcc 60
             ||||||||||||||||||||||
Sbjct: 18119 cccaccccgcccgccgccgtcc 18098
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>gb|AY255181.1| Hordeum brevisubulatum vacuolar proton-inorganic pyrophosphatase
           (AVP1) mRNA, complete cds
          Length = 2777

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                     
Query: 158 tcggcatcgtcttcgccgtcgcgcagtggttcatcgtctccaaggtcaaggtcacccc 215
           ||||||||| |||||| ||   |||||||||  | |||||||||||||||||| ||||
Sbjct: 106 tcggcatcgccttcgcggtgctgcagtggtttctggtctccaaggtcaaggtcgcccc 163
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>gb|AC006450.13|AC006450 Homo sapiens chromosome 9, clone RP11-85O21, complete sequence
          Length = 177555

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 39    cccaccccgcccgccgccgtcc 60
             ||||||||||||||||||||||
Sbjct: 33152 cccaccccgcccgccgccgtcc 33173
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>gb|AY106681.1| Zea mays PCO136360 mRNA sequence
          Length = 1141

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 150 cggggtcatcggcatcgtcttc 171
           ||||||||||||||||||||||
Sbjct: 933 cggggtcatcggcatcgtcttc 954
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>dbj|AB032839.1| Hordeum vulgare HVP1 mRNA for vacuolar proton-inorganic
           pyrophosphatase, complete cds
          Length = 2757

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                     
Query: 158 tcggcatcgtcttcgccgtcgcgcagtggttcatcgtctccaaggtcaaggtcacccc 215
           ||||||||| |||||| ||   ||||||| |  |||||||||||||||||||| ||||
Sbjct: 147 tcggcatcgccttcgcggtgctgcagtgggtgctcgtctccaaggtcaaggtcgcccc 204
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>ref|XM_475286.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 621

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 152 gggtcatcggcatcgtcttcgccgt 176
           ||||| |||||||||||||||||||
Sbjct: 278 gggtcgtcggcatcgtcttcgccgt 302
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>gb|BT017002.1| Zea mays clone EK07D2309H12.c mRNA sequence
          Length = 908

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 215 caggcgccgcctccgccgccg 235
           |||||||||||||||||||||
Sbjct: 286 caggcgccgcctccgccgccg 266
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>gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1301_G07,
             complete sequence
          Length = 106166

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 152   gggtcatcggcatcgtcttcgccgt 176
             ||||| |||||||||||||||||||
Sbjct: 75795 gggtcgtcggcatcgtcttcgccgt 75819
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>gb|AC163391.4| Mus musculus chromosome 3, clone RP23-173N16, complete sequence
          Length = 187855

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 88    gccagcctgacagccatggcg 108
             |||||||||||||||||||||
Sbjct: 10456 gccagcctgacagccatggcg 10436
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 188    tcatcgtctccaaggtcaagg 208
              |||||||||||||||||||||
Sbjct: 717070 tcatcgtctccaaggtcaagg 717090
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>gb|AC102465.11| Mus musculus chromosome 3, clone RP24-333O23, complete sequence
          Length = 138893

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 88    gccagcctgacagccatggcg 108
             |||||||||||||||||||||
Sbjct: 25309 gccagcctgacagccatggcg 25289
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 152      gggtcatcggcatcgtcttcgccgt 176
                ||||| |||||||||||||||||||
Sbjct: 21096930 gggtcgtcggcatcgtcttcgccgt 21096954



 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 216      aggcgccgcctccgccgccg 235
                ||||||||||||||||||||
Sbjct: 28373403 aggcgccgcctccgccgccg 28373384



 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 155      tcatcggcatcgtcttcgccgtcg 178
                |||||||||||||| |||||||||
Sbjct: 27855957 tcatcggcatcgtcctcgccgtcg 27855980
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>gb|AC115041.15| Mus musculus chromosome 3, clone RP24-285A14, complete sequence
          Length = 149484

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 88     gccagcctgacagccatggcg 108
              |||||||||||||||||||||
Sbjct: 110603 gccagcctgacagccatggcg 110583
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>ref|XM_475908.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2085

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 216 aggcgccgcctccgccgccg 235
           ||||||||||||||||||||
Sbjct: 77  aggcgccgcctccgccgccg 96
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>ref|XM_450641.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 930

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 212 ccccaggcgccgcctccgccgccg 235
           |||||||||||||| |||||||||
Sbjct: 475 ccccaggcgccgccgccgccgccg 498
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>gb|AY022083.1| Oryza sativa microsatellite MRG4408 containing (TC)X15, genomic
           sequence
          Length = 230

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 38  tcccaccccgcccgccgccg 57
           ||||||||||||||||||||
Sbjct: 227 tcccaccccgcccgccgccg 208
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>gb|AC079936.7| Oryza sativa (japonica cultivar-group) chromosome X clone
             OSJNBb0061I18, complete sequence
          Length = 143163

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    tcccaccccgcccgccgccg 57
             ||||||||||||||||||||
Sbjct: 14658 tcccaccccgcccgccgccg 14677
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>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10,
              complete sequence
          Length = 187034

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    aggcgccgcctccgccgccg 235
              ||||||||||||||||||||
Sbjct: 157645 aggcgccgcctccgccgccg 157626
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>gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0053D02, complete sequence
          Length = 157106

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 155   tcatcggcatcgtcttcgccgtcg 178
             |||||||||||||| |||||||||
Sbjct: 86374 tcatcggcatcgtcctcgccgtcg 86397
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>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08,
            complete sequence
          Length = 119500

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 216  aggcgccgcctccgccgccg 235
            ||||||||||||||||||||
Sbjct: 8327 aggcgccgcctccgccgccg 8308
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>gb|BC024053.1| Mus musculus one cut domain, family member 1, mRNA (cDNA clone
           MGC:36136 IMAGE:5101697), complete cds
          Length = 1836

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   acacagagagagcgagagac 20
           ||||||||||||||||||||
Sbjct: 229 acacagagagagcgagagac 248
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>gb|AC100600.22| Mus musculus chromosome 9, clone RP23-157H17, complete sequence
          Length = 225538

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    acacagagagagcgagagac 20
            ||||||||||||||||||||
Sbjct: 9870 acacagagagagcgagagac 9851
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>ref|NM_008262.2| Mus musculus one cut domain, family member 1 (Onecut1), mRNA
          Length = 1836

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   acacagagagagcgagagac 20
           ||||||||||||||||||||
Sbjct: 229 acacagagagagcgagagac 248
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 196     tccaaggtcaaggtcacccc 215
               ||||||||||||||||||||
Sbjct: 1998611 tccaaggtcaaggtcacccc 1998630
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>emb|Z98981.3|SPAC6F6 S.pombe chromosome I cosmid c6F6
          Length = 43307

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   gatcctcggggagctcggga 127
             ||||||||||||||||||||
Sbjct: 21137 gatcctcggggagctcggga 21156
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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   atcggcatcgtcttcgccgt 176
             ||||||||||||||||||||
Sbjct: 75382 atcggcatcgtcttcgccgt 75401
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>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 157    atcggcatcgtcttcgccgt 176
              ||||||||||||||||||||
Sbjct: 347195 atcggcatcgtcttcgccgt 347214
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>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12
          Length = 349346

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    atcggcatcgtcttcgccgt 176
              ||||||||||||||||||||
Sbjct: 326805 atcggcatcgtcttcgccgt 326786
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>gb|AC091734.3| Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0068A07, from Chromosome 10, complete sequence
          Length = 154505

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    tcccaccccgcccgccgccg 57
             ||||||||||||||||||||
Sbjct: 10942 tcccaccccgcccgccgccg 10923
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>gb|AC153857.7| Mus musculus 6 BAC RP23-158G17 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 215780

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 29     cccccctcatcccaccccgc 48
              ||||||||||||||||||||
Sbjct: 101292 cccccctcatcccaccccgc 101311
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>gb|AC103858.2| Homo sapiens chromosome 15, clone RP11-761I4, complete sequence
          Length = 194996

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     acacagagagagcgagagac 20
             ||||||||||||||||||||
Sbjct: 83171 acacagagagagcgagagac 83190
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>ref|NM_001019330.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC6F6.07c),
           partial mRNA
          Length = 456

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 108 gatcctcggggagctcggga 127
           ||||||||||||||||||||
Sbjct: 262 gatcctcggggagctcggga 243
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>gb|U95945.1|MMU95945 Mus musculus hepatocyte nuclear factor 6 (HNF-6) mRNA, complete
          cds
          Length = 1628

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  acacagagagagcgagagac 20
          ||||||||||||||||||||
Sbjct: 22 acacagagagagcgagagac 41
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 38       tcccaccccgcccgccgccg 57
                ||||||||||||||||||||
Sbjct: 12489517 tcccaccccgcccgccgccg 12489498
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 212      ccccaggcgccgcctccgccgccg 235
                |||||||||||||| |||||||||
Sbjct: 11964009 ccccaggcgccgccgccgccgccg 11964032
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 216      aggcgccgcctccgccgccg 235
                ||||||||||||||||||||
Sbjct: 10207804 aggcgccgcctccgccgccg 10207785
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                               
Query: 100     gccatggcgatcctcggggagctcgggacggagatcctcatccccgtc 147
               |||||||||||||||  || ||||||||| ||| |  |||||||||||
Sbjct: 3930453 gccatggcgatcctctcggcgctcgggaccgaggtgttcatccccgtc 3930500
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 74      ggtttcgtcggcctgccagc 93
               ||||||||||||||||||||
Sbjct: 2831217 ggtttcgtcggcctgccagc 2831198
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>gb|AC092178.4| Homo sapiens BAC clone RP11-627I23 from 2, complete sequence
          Length = 166299

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      acacagagagagcgagagac 20
              ||||||||||||||||||||
Sbjct: 103011 acacagagagagcgagagac 102992
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>gb|AC154430.3| Mus musculus BAC clone RP24-208K8 from chromosome 16, complete sequence
          Length = 178222

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 84    gcctgccagcctgacagccatggc 107
             ||||||||||||| ||||||||||
Sbjct: 45785 gcctgccagcctgccagccatggc 45762
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 212     ccccaggcgccgcctccgccgccg 235
               |||||||||||||| |||||||||
Sbjct: 2401838 ccccaggcgccgccgccgccgccg 2401815
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>dbj|AP004650.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1540_G08
          Length = 126263

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   aggcgccgcctccgccgccg 235
             ||||||||||||||||||||
Sbjct: 13827 aggcgccgcctccgccgccg 13808
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>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0035I03
          Length = 153749

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                             
Query: 100   gccatggcgatcctcggggagctcgggacggagatcctcatccccgtc 147
             |||||||||||||||  || ||||||||| ||| |  |||||||||||
Sbjct: 36329 gccatggcgatcctctcggcgctcgggaccgaggtgttcatccccgtc 36376
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 179     cgcagtggttcatcgtctcc 198
               ||||||||||||||||||||
Sbjct: 4898734 cgcagtggttcatcgtctcc 4898753
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>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0441A12
          Length = 185437

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 212   ccccaggcgccgcctccgccgccg 235
             |||||||||||||| |||||||||
Sbjct: 68489 ccccaggcgccgccgccgccgccg 68512
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>dbj|AK110121.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-161-B07, full
            insert sequence
          Length = 3052

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 156  catcggcatcgtcttcgccgtcgc 179
            ||||||||||||| ||||||||||
Sbjct: 1731 catcggcatcgtcatcgccgtcgc 1708
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>gb|AF141325.2|HSINPPI2 Homo sapiens inositol polyphosphate 1-phosphatase (INPP1) gene,
             complete cds
          Length = 37294

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     acacagagagagcgagagac 20
             ||||||||||||||||||||
Sbjct: 26363 acacagagagagcgagagac 26344
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>dbj|AK066933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091F19, full
           insert sequence
          Length = 2738

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 100 gccatggcgatcctcggggagctcgggacggagatcctcatccccgtc 147
           |||||||||||||||  || ||||||||| ||| |  |||||||||||
Sbjct: 107 gccatggcgatcctctcggcgctcgggaccgaggtgttcatccccgtc 154
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>emb|X67030.1|SPRPS13G S.pombe rps13 gene for ribosomal protein S13
          Length = 983

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 108 gatcctcggggagctcggga 127
           ||||||||||||||||||||
Sbjct: 552 gatcctcggggagctcggga 533
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>emb|AL928581.8| Mouse DNA sequence from clone RP23-318H20 on chromosome 2, complete
             sequence
          Length = 178735

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 29    cccccctcatcccaccccgcccgc 52
             |||||| |||||||||||||||||
Sbjct: 81012 ccccccccatcccaccccgcccgc 80989
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>emb|CT025657.12| Mouse DNA sequence from clone RP23-342N19 on chromosome 9, complete
             sequence
          Length = 202383

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     acacagagagagcgagagac 20
             ||||||||||||||||||||
Sbjct: 41380 acacagagagagcgagagac 41399
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>dbj|AB012766.1| Oryza sativa gene for ovp2, complete cds
          Length = 5985

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                            
Query: 100  gccatggcgatcctcggggagctcgggacggagatcctcatccccgtc 147
            |||||||||||||||  || ||||||||| ||| |  |||||||||||
Sbjct: 1330 gccatggcgatcctctcggcgctcgggaccgaggtgttcatccccgtc 1377
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 38       tcccaccccgcccgccgccg 57
                ||||||||||||||||||||
Sbjct: 12496857 tcccaccccgcccgccgccg 12496838
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>dbj|D45384.1| Oryza sativa mRNA for vacuolar H+-pyrophosphatase, complete cds
          Length = 2710

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 100 gccatggcgatcctcggggagctcgggacggagatcctcatccccgtc 147
           |||||||||||||||  || ||||||||| ||| |  |||||||||||
Sbjct: 92  gccatggcgatcctctcggcgctcgggaccgaggtgttcatccccgtc 139


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,629,377
Number of Sequences: 3902068
Number of extensions: 1629377
Number of successful extensions: 92151
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91133
Number of HSP's gapped (non-prelim): 1017
length of query: 235
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 213
effective length of database: 17,147,199,772
effective search space: 3652353551436
effective search space used: 3652353551436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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