ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl25f05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 46 0.099
2dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 46 0.099
3gb|AE011989.1| Xanthomonas axonopodis pv. citri str. 306, secti... 46 0.099
4gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 46 0.099
5ref|XM_746906.1| Aspergillus fumigatus Af293 hypothetical protei... 44 0.39
6gb|AY183411.1| Phytophthora sojae elicitin protein (SOJ3) mRNA, ... 44 0.39
7gb|DQ229243.1| Phytophthora sojae elicitin-like protein SOJ3D ge... 44 0.39
8emb|AL136110.17| Human DNA sequence from clone RP3-479G13 on chr... 42 1.5
9emb|CR555306.1| Azoarcus sp. EbN1 complete genome 42 1.5
10dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
11gb|AC025906.2|AC025906 Oryza sativa (japonica cultivar-group) ch... 42 1.5
12dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 1.5
13dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.5
14gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 42 1.5
15gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
16ref|NM_188721.1| Oryza sativa (japonica cultivar-group), predic... 40 6.1
17gb|AC163358.3| Mus musculus BAC clone RP23-11M14 from chromosome... 40 6.1
18ref|XM_465930.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.1
19gb|AC120859.12| Mus musculus chromosome 18, clone RP24-200D2, co... 40 6.1
20ref|XM_417875.1| PREDICTED: Gallus gallus similar to Sorting nex... 40 6.1
21gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence 40 6.1
22gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 6.1
23gb|AC140208.2| Mus musculus BAC clone RP24-469B21 from chromosom... 40 6.1
24gb|AY191612.1| Pan troglodytes Rho-associated protein kinase (RO... 40 6.1
25gb|AC114643.9| Mus musculus chromosome 6, clone RP24-127D6, comp... 40 6.1
26gb|AC115843.10| Mus musculus chromosome 9, clone RP24-239P6, com... 40 6.1
27gb|AC124688.3| Mus musculus BAC clone RP24-484D9 from chromosome... 40 6.1
28gb|AC122252.4| Mus musculus BAC clone RP23-170E7 from chromosome... 40 6.1
29gb|AC123819.2| Mus musculus BAC clone RP23-460M11 from chromosom... 40 6.1
30gb|AC121824.2| Mus musculus BAC clone RP23-467P15 from 18, compl... 40 6.1
31gb|AC118632.7| Mus musculus chromosome 18, clone RP24-94D24, com... 40 6.1
32gb|AC069564.34| Mus musculus strain C57BL/6J chromosome 17 clone... 40 6.1
33gb|AC100953.12| Mus musculus chromosome 5, clone RP23-73P16, com... 40 6.1
34gb|BC098889.1| Danio rerio telomeric repeat binding factor a, mR... 40 6.1
35emb|AL590302.6| Human DNA sequence from clone RP11-252P19 on chr... 40 6.1
36emb|AL365502.57| Human DNA sequence from clone RP11-48C7 on chro... 40 6.1
37gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 6.1
38emb|AL138834.28| Human DNA sequence from clone RP11-113A10 on ch... 40 6.1
39emb|AL078477.5|HSDJ259N9 Human DNA sequence from clone RP1-69B10... 40 6.1
40ref|XM_795107.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 40 6.1
41emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.1
42emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete ... 40 6.1
43emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4,... 40 6.1
44emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4,... 40 6.1
45emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 40 6.1
46gb|BC096857.1| Danio rerio telomeric repeat binding factor a, mR... 40 6.1
47gb|AC160936.2| Mus musculus BAC clone RP23-300E17 from chromosom... 40 6.1
48gb|AC183297.3| Pan troglodytes BAC clone CH251-300E12 from chrom... 40 6.1
49gb|AE005766.1| Caulobacter crescentus CB15 section 92 of 359 of ... 40 6.1
50gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 6.1
51gb|AC160561.2| Mus musculus BAC clone RP23-102D22 from chromosom... 40 6.1
52gb|CP000249.1| Frankia sp. CcI3, complete genome 40 6.1
53gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 6.1
54gb|AF072135.1|AF072135 Caulobacter crescentus hook associated pr... 40 6.1
55gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 6.1
56dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
57dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
58dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
59dbj|D78345.1| Homo sapiens DNA, gamma gene loci of immunoglobuli... 40 6.1
60gb|AC087653.6| Homo sapiens chromosome 11, clone RP1-259N9, comp... 40 6.1
61dbj|AP003201.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
62dbj|AP004861.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
63emb|AL928742.3|CNS08CBF Human chromosome 14 DNA sequence BAC R-7... 40 6.1
64emb|AL122127.6|CNS01DT2 Human chromosome 14 DNA sequence BAC R-4... 40 6.1
65ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) ... 40 6.1
66emb|CR956421.19| Pig DNA sequence from clone PigE-225A14 on chro... 40 6.1
67gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 6.1
68emb|AL844560.5| Mouse DNA sequence from clone RP23-334M9 on chro... 40 6.1
69gb|AC151735.3| Mus musculus BAC clone RP23-24D16 from 9, complet... 40 6.1
70gb|AC154382.1| Mus musculus BAC clone RP23-51D17 from 13, comple... 40 6.1
71gb|AC140392.3| Mus musculus BAC clone RP24-89F9 from chromosome ... 40 6.1
72emb|AL121820.4|CNS01DSM Human chromosome 14 DNA sequence BAC C-2... 40 6.1
73emb|Z17370.1|HSIGG1CP H.sapiens germline immunoglobulin gamma1 c... 40 6.1
74emb|AL928761.2|CNS08CBY Human chromosome 14 DNA sequence Partial... 40 6.1
75dbj|AP000845.4| Homo sapiens genomic DNA, chromosome 18p clone:R... 40 6.1 
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 73      gcgcgccactgccgcggccagcg 95
               |||||||||||||||||||||||
Sbjct: 4060472 gcgcgccactgccgcggccagcg 4060494
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 73      gcgcgccactgccgcggccagcg 95
               |||||||||||||||||||||||
Sbjct: 1211146 gcgcgccactgccgcggccagcg 1211124
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>gb|AE011989.1| Xanthomonas axonopodis pv. citri str. 306,  section 367 of 469 of the
            complete genome
          Length = 11053

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 73   gcgcgccactgccgcggccagcg 95
            |||||||||||||||||||||||
Sbjct: 1311 gcgcgccactgccgcggccagcg 1333
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 73      gcgcgccactgccgcggccagcg 95
               |||||||||||||||||||||||
Sbjct: 1244691 gcgcgccactgccgcggccagcg 1244669
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>ref|XM_746906.1| Aspergillus fumigatus Af293 hypothetical protein (Afu4g08270)
           partial mRNA
          Length = 1005

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 213 gtgagcggggcgacaggcgcga 234
           ||||||||||||||||||||||
Sbjct: 352 gtgagcggggcgacaggcgcga 331



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 258 gtgagcggggcgacaggcgcga 279
           ||||||||||||||||||||||
Sbjct: 352 gtgagcggggcgacaggcgcga 331
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>gb|AY183411.1| Phytophthora sojae elicitin protein (SOJ3) mRNA, complete cds
          Length = 814

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 313 cgacggcgacggccgcgacctcgacg 338
           |||||||| |||||||||||||||||
Sbjct: 557 cgacggcgtcggccgcgacctcgacg 582
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>gb|DQ229243.1| Phytophthora sojae elicitin-like protein SOJ3D gene, complete cds
          Length = 633

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 313 cgacggcgacggccgcgacctcgacg 338
           |||||||| |||||||||||||||||
Sbjct: 488 cgacggcgtcggccgcgacctcgacg 513
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>emb|AL136110.17| Human DNA sequence from clone RP3-479G13 on chromosome 6 Contains part
             of the AKAP7 gene for A kinase (PRKA) anchor protein 7,
             complete sequence
          Length = 71179

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 120   cacccctcctccttctccttc 140
             |||||||||||||||||||||
Sbjct: 54697 cacccctcctccttctccttc 54677
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 301     cggcgacctgtgcgacggcgacggc 325
               |||||||||| ||||||||||||||
Sbjct: 1863930 cggcgacctgcgcgacggcgacggc 1863906
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 121      acccctcctccttctccttcc 141
                |||||||||||||||||||||
Sbjct: 14496065 acccctcctccttctccttcc 14496045
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>gb|AC025906.2|AC025906 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0075H14,
              complete sequence
          Length = 155420

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 121    acccctcctccttctccttcc 141
              |||||||||||||||||||||
Sbjct: 110428 acccctcctccttctccttcc 110408
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 152     tgcgacggcggcgacctgggc 172
               |||||||||||||||||||||
Sbjct: 3950998 tgcgacggcggcgacctgggc 3950978
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 229     gcgcgacctcgacggcgcccg 249
               |||||||||||||||||||||
Sbjct: 1646380 gcgcgacctcgacggcgcccg 1646400



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 72      ggcgcgccactgccgcggccagcg 95
               ||||||||||||||||| ||||||
Sbjct: 3757805 ggcgcgccactgccgcgcccagcg 3757828
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 301     cggcgacctgtgcgacggcgacggc 325
               |||||||||| ||||||||||||||
Sbjct: 1813293 cggcgacctgcgcgacggcgacggc 1813269



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 56      aagctcgaggccggccggcgcgcc 79
               |||||||| |||||||||||||||
Sbjct: 1705856 aagctcgatgccggccggcgcgcc 1705833
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 121      acccctcctccttctccttcc 141
                |||||||||||||||||||||
Sbjct: 14504307 acccctcctccttctccttcc 14504287
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>ref|NM_188721.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1380

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 ggacctgtgcgacggcggcg 164
           ||||||||||||||||||||
Sbjct: 681 ggacctgtgcgacggcggcg 700
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>gb|AC163358.3| Mus musculus BAC clone RP23-11M14 from chromosome 14, complete
           sequence
          Length = 208634

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 122 cccctcctccttctccttcc 141
           ||||||||||||||||||||
Sbjct: 622 cccctcctccttctccttcc 641
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>ref|XM_465930.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 663

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 122 cccctcctccttctccttcc 141
           ||||||||||||||||||||
Sbjct: 426 cccctcctccttctccttcc 407
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>gb|AC120859.12| Mus musculus chromosome 18, clone RP24-200D2, complete sequence
          Length = 184327

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    cccctcctccttctccttcc 141
              ||||||||||||||||||||
Sbjct: 150628 cccctcctccttctccttcc 150609
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>ref|XM_417875.1| PREDICTED: Gallus gallus similar to Sorting nexin 19 (LOC419734),
           mRNA
          Length = 2771

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 382 cggcgcacgtgcgcgaggcg 401
           ||||||||||||||||||||
Sbjct: 62  cggcgcacgtgcgcgaggcg 81
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>gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence
          Length = 204120

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   gcgacggcgacggccgcgac 331
             ||||||||||||||||||||
Sbjct: 60454 gcgacggcgacggccgcgac 60473
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 312     gcgacggcgacggccgcgacctcg 335
               ||||||||||||| ||||||||||
Sbjct: 1653221 gcgacggcgacgggcgcgacctcg 1653198
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>gb|AC140208.2| Mus musculus BAC clone RP24-469B21 from chromosome 14, complete sequence
          Length = 200350

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    cccctcctccttctccttcc 141
              ||||||||||||||||||||
Sbjct: 184620 cccctcctccttctccttcc 184639
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>gb|AY191612.1| Pan troglodytes Rho-associated protein kinase (ROCK1) gene, partial cds;
              ubiquitin specific protease 14 (USP14) gene, complete cds;
              and THO complex 1 (THOC1) gene, partial cds
          Length = 186959

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      tttttcgttttcctctctag 22
              ||||||||||||||||||||
Sbjct: 141238 tttttcgttttcctctctag 141257
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>gb|AC114643.9| Mus musculus chromosome 6, clone RP24-127D6, complete sequence
          Length = 215696

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   cccctcctccttctccttcc 141
             ||||||||||||||||||||
Sbjct: 98182 cccctcctccttctccttcc 98201
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>gb|AC115843.10| Mus musculus chromosome 9, clone RP24-239P6, complete sequence
          Length = 215265

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   cccctcctccttctccttcc 141
             ||||||||||||||||||||
Sbjct: 86181 cccctcctccttctccttcc 86200
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>gb|AC124688.3| Mus musculus BAC clone RP24-484D9 from chromosome 14, complete
            sequence
          Length = 141678

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 122  cccctcctccttctccttcc 141
            ||||||||||||||||||||
Sbjct: 6135 cccctcctccttctccttcc 6154
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>gb|AC122252.4| Mus musculus BAC clone RP23-170E7 from chromosome 17, complete sequence
          Length = 219695

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    cccctcctccttctccttcc 141
              ||||||||||||||||||||
Sbjct: 119653 cccctcctccttctccttcc 119672
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>gb|AC123819.2| Mus musculus BAC clone RP23-460M11 from chromosome 8, complete sequence
          Length = 202899

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    cccctcctccttctccttcc 141
              ||||||||||||||||||||
Sbjct: 122427 cccctcctccttctccttcc 122446
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>gb|AC121824.2| Mus musculus BAC clone RP23-467P15 from 18, complete sequence
          Length = 195027

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   cccctcctccttctccttcc 141
             ||||||||||||||||||||
Sbjct: 76985 cccctcctccttctccttcc 76966
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>gb|AC118632.7| Mus musculus chromosome 18, clone RP24-94D24, complete sequence
          Length = 198636

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    cccctcctccttctccttcc 141
              ||||||||||||||||||||
Sbjct: 198258 cccctcctccttctccttcc 198277
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>gb|AC069564.34| Mus musculus strain C57BL/6J chromosome 17 clone rp23-435n13,
           complete sequence
          Length = 185784

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 122 cccctcctccttctccttcc 141
           ||||||||||||||||||||
Sbjct: 215 cccctcctccttctccttcc 196
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>gb|AC100953.12| Mus musculus chromosome 5, clone RP23-73P16, complete sequence
          Length = 216490

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   tcacccctcctccttctcct 138
             ||||||||||||||||||||
Sbjct: 78807 tcacccctcctccttctcct 78826
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>gb|BC098889.1| Danio rerio telomeric repeat binding factor a, mRNA (cDNA clone
            MGC:114011 IMAGE:2601225), complete cds
          Length = 1910

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   gtgtgtgtggcggctgcagg 46
            ||||||||||||||||||||
Sbjct: 1361 gtgtgtgtggcggctgcagg 1342
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>emb|AL590302.6| Human DNA sequence from clone RP11-252P19 on chromosome 6 Contains 2
            novel genes and 3 CpG islands, complete sequence
          Length = 105898

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 122  cccctcctccttctccttcc 141
            ||||||||||||||||||||
Sbjct: 6965 cccctcctccttctccttcc 6946
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>emb|AL365502.57| Human DNA sequence from clone RP11-48C7 on chromosome 9q34.2-34.3
             Contains the gene for nasal embryonic luteinizing
             hormone-releasing hormone factor (DKFZP586J1624), a novel
             gene (FLJ31318), the MRPL41 gene for mitochondrial
             ribosomal protein L41 (RPML27, MRP-L270), a novel gene
             (LOC9271), the gene for melanin-concentrating hormone
             receptor 1 interacting zinc-finger protein (ZMYND17)
             (MIZIP), a novel gene (MGC40555), a novel protein and
             eleven CpG islands, complete sequence
          Length = 174995

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   cccctcctccttctccttcc 141
             ||||||||||||||||||||
Sbjct: 58239 cccctcctccttctccttcc 58220



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   cccctcctccttctccttcc 141
             ||||||||||||||||||||
Sbjct: 58201 cccctcctccttctccttcc 58182



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   cccctcctccttctccttcc 141
             ||||||||||||||||||||
Sbjct: 58182 cccctcctccttctccttcc 58163



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   cccctcctccttctccttcc 141
             ||||||||||||||||||||
Sbjct: 58163 cccctcctccttctccttcc 58144
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 276     gcgacctcgacagcgcccgt 295
               ||||||||||||||||||||
Sbjct: 1307899 gcgacctcgacagcgcccgt 1307918
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>emb|AL138834.28| Human DNA sequence from clone RP11-113A10 on chromosome 9 Contains
             three seven transmembrane helix receptor pseudogenes, a
             pseudogene similar to part of a seven transmembrane helix
             receptor, the RECK gene for
             reversion-inducing-cysteine-rich protein with kazal motifs
             (ST15, hRECK) and a CpG island, complete sequence
          Length = 123413

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   acccctcctccttctccttc 140
             ||||||||||||||||||||
Sbjct: 33044 acccctcctccttctccttc 33063
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>emb|AL078477.5|HSDJ259N9 Human DNA sequence from clone RP1-69B10 on chromosome 11p13 Contains a
             pseudogene similar to heterogeneous nuclear
             ribonucleoprotein, the gene for GA17 protein, ESTs, STSs,
             GSSs and a CpG island, complete sequence
          Length = 107652

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   cccctcctccttctccttcc 141
             ||||||||||||||||||||
Sbjct: 45357 cccctcctccttctccttcc 45376
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>ref|XM_795107.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC582888 (LOC582888), mRNA
          Length = 973

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 124 cctcctccttctccttccgatgga 147
           ||||||||| ||||||||||||||
Sbjct: 479 cctcctcctcctccttccgatgga 456
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 312     gcgacggcgacggccgcgacctcg 335
               ||||||||||||| ||||||||||
Sbjct: 2988371 gcgacggcgacgggcgcgacctcg 2988348
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>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29
          Length = 277000

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 313   cgacggcgacggccgcgacc 332
             ||||||||||||||||||||
Sbjct: 14723 cgacggcgacggccgcgacc 14742
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>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11,
            complete sequence
          Length = 147806

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 310  gtgcgacggcgacggccgcg 329
            ||||||||||||||||||||
Sbjct: 5654 gtgcgacggcgacggccgcg 5673
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>emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065O17,
              complete sequence
          Length = 167269

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 310    gtgcgacggcgacggccgcg 329
              ||||||||||||||||||||
Sbjct: 161282 gtgcgacggcgacggccgcg 161301
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    ccggcgcgacctcgagagcg 200
              ||||||||||||||||||||
Sbjct: 139665 ccggcgcgacctcgagagcg 139684
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>gb|BC096857.1| Danio rerio telomeric repeat binding factor a, mRNA (cDNA clone
            MGC:111909 IMAGE:7221992), complete cds
          Length = 1876

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   gtgtgtgtggcggctgcagg 46
            ||||||||||||||||||||
Sbjct: 1343 gtgtgtgtggcggctgcagg 1324
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>gb|AC160936.2| Mus musculus BAC clone RP23-300E17 from chromosome 12, complete
             sequence
          Length = 198897

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   cccctcctccttctccttcc 141
             ||||||||||||||||||||
Sbjct: 15085 cccctcctccttctccttcc 15104
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>gb|AC183297.3| Pan troglodytes BAC clone CH251-300E12 from chromosome 18, complete
             sequence
          Length = 173095

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     tttttcgttttcctctctag 22
             ||||||||||||||||||||
Sbjct: 76152 tttttcgttttcctctctag 76171
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>gb|AE005766.1| Caulobacter crescentus CB15 section 92 of 359 of the complete genome
          Length = 10091

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 176  ggcgaccggcgcgacctcga 195
            ||||||||||||||||||||
Sbjct: 8079 ggcgaccggcgcgacctcga 8060
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 319     cgacggccgcgacctcgacgaccc 342
               |||||||||||||||| |||||||
Sbjct: 3541589 cgacggccgcgacctcaacgaccc 3541612
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>gb|AC160561.2| Mus musculus BAC clone RP23-102D22 from chromosome 12, complete sequence
          Length = 204231

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    cccctcctccttctccttcc 141
              ||||||||||||||||||||
Sbjct: 134044 cccctcctccttctccttcc 134063
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 310     gtgcgacggcgacggccgcgacctcgac 337
               |||||||||||||||||||  |||||||
Sbjct: 5355478 gtgcgacggcgacggccgcctcctcgac 5355505
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Minus

                                              
Query: 139     tccgatggacctgt--gcgacggcggcgacc 167
               ||||||||||||||  |||||||||||||||
Sbjct: 1796300 tccgatggacctgtgggcgacggcggcgacc 1796270
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>gb|AF072135.1|AF072135 Caulobacter crescentus hook associated protein I homolog (flaN),
            flagellar operon, complete sequence and II.1 protein
            (II.1) genes, complete cds
          Length = 6943

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 176  ggcgaccggcgcgacctcga 195
            ||||||||||||||||||||
Sbjct: 2389 ggcgaccggcgcgacctcga 2370
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 319     cgacggccgcgacctcgacg 338
               ||||||||||||||||||||
Sbjct: 1500447 cgacggccgcgacctcgacg 1500466
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 310      gtgcgacggcgacggccgcg 329
                ||||||||||||||||||||
Sbjct: 27998429 gtgcgacggcgacggccgcg 27998448
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 122      cccctcctccttctccttcc 141
                ||||||||||||||||||||
Sbjct: 18370251 cccctcctccttctccttcc 18370270
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 145     ggacctgtgcgacggcggcg 164
               ||||||||||||||||||||
Sbjct: 7847980 ggacctgtgcgacggcggcg 7847999
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>dbj|D78345.1| Homo sapiens DNA, gamma gene loci of immunoglobulin heavy chains
          Length = 21013

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    gtgtgtgtggcggctgcagg 46
             ||||||||||||||||||||
Sbjct: 11385 gtgtgtgtggcggctgcagg 11366
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>gb|AC087653.6| Homo sapiens chromosome 11, clone RP1-259N9, complete sequence
          Length = 138141

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 122 cccctcctccttctccttcc 141
           ||||||||||||||||||||
Sbjct: 686 cccctcctccttctccttcc 705
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>dbj|AP003201.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1066G12
          Length = 136263

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   ggacctgtgcgacggcggcg 164
             ||||||||||||||||||||
Sbjct: 42926 ggacctgtgcgacggcggcg 42945
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>dbj|AP004861.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0001A11
          Length = 153252

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   cccctcctccttctccttcc 141
             ||||||||||||||||||||
Sbjct: 33175 cccctcctccttctccttcc 33194
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>emb|AL928742.3|CNS08CBF Human chromosome 14 DNA sequence BAC R-731F5 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176237

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    gtgtgtgtggcggctgcagg 46
             ||||||||||||||||||||
Sbjct: 34140 gtgtgtgtggcggctgcagg 34121



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    gtgtgtgtggcggctgcagg 46
             ||||||||||||||||||||
Sbjct: 15413 gtgtgtgtggcggctgcagg 15394
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>emb|AL122127.6|CNS01DT2 Human chromosome 14 DNA sequence BAC R-417P24 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 169802

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    gtgtgtgtggcggctgcagg 46
             ||||||||||||||||||||
Sbjct: 38357 gtgtgtgtggcggctgcagg 38376



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    gtgtgtgtggcggctgcagg 46
             ||||||||||||||||||||
Sbjct: 10593 gtgtgtgtggcggctgcagg 10612
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>ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) on chromosome 14
          Length = 1279711

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 27      gtgtgtgtggcggctgcagg 46
               ||||||||||||||||||||
Sbjct: 1199641 gtgtgtgtggcggctgcagg 1199622



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 27      gtgtgtgtggcggctgcagg 46
               ||||||||||||||||||||
Sbjct: 1180914 gtgtgtgtggcggctgcagg 1180895



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 27      gtgtgtgtggcggctgcagg 46
               ||||||||||||||||||||
Sbjct: 1155873 gtgtgtgtggcggctgcagg 1155854



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 27      gtgtgtgtggcggctgcagg 46
               ||||||||||||||||||||
Sbjct: 1082645 gtgtgtgtggcggctgcagg 1082626



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 27      gtgtgtgtggcggctgcagg 46
               ||||||||||||||||||||
Sbjct: 1054881 gtgtgtgtggcggctgcagg 1054862
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>emb|CR956421.19| Pig DNA sequence from clone PigE-225A14 on chromosome 6, complete
            sequence
          Length = 127959

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 122  cccctcctccttctccttcc 141
            ||||||||||||||||||||
Sbjct: 3594 cccctcctccttctccttcc 3613
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 228     ggcgcgacctcgacggcgcc 247
               ||||||||||||||||||||
Sbjct: 3160808 ggcgcgacctcgacggcgcc 3160789
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>emb|AL844560.5| Mouse DNA sequence from clone RP23-334M9 on chromosome 2, complete
              sequence
          Length = 185066

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    cccctcctccttctccttcc 141
              ||||||||||||||||||||
Sbjct: 106517 cccctcctccttctccttcc 106498
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>gb|AC151735.3| Mus musculus BAC clone RP23-24D16 from 9, complete sequence
          Length = 201762

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   cccctcctccttctccttcc 141
             ||||||||||||||||||||
Sbjct: 25652 cccctcctccttctccttcc 25671
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>gb|AC154382.1| Mus musculus BAC clone RP23-51D17 from 13, complete sequence
          Length = 180348

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    cccctcctccttctccttcc 141
              ||||||||||||||||||||
Sbjct: 113360 cccctcctccttctccttcc 113379
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>gb|AC140392.3| Mus musculus BAC clone RP24-89F9 from chromosome 9, complete sequence
          Length = 225973

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    cccctcctccttctccttcc 141
              ||||||||||||||||||||
Sbjct: 147861 cccctcctccttctccttcc 147880
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>emb|AL121820.4|CNS01DSM Human chromosome 14 DNA sequence BAC C-2325P2 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 117449

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   tgcgcgcggcgacctgtgcg 314
             ||||||||||||||||||||
Sbjct: 65523 tgcgcgcggcgacctgtgcg 65542
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>emb|Z17370.1|HSIGG1CP H.sapiens germline immunoglobulin gamma1 chain constant region gene
          Length = 2802

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   gtgtgtgtggcggctgcagg 46
            ||||||||||||||||||||
Sbjct: 2726 gtgtgtgtggcggctgcagg 2707
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>emb|AL928761.2|CNS08CBY Human chromosome 14 DNA sequence Partial sequence from library PCR
            product from genomic DNA from chromosome 14 of Homo
            sapiens (Human), complete sequence
          Length = 13616

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   gtgtgtgtggcggctgcagg 46
            ||||||||||||||||||||
Sbjct: 1839 gtgtgtgtggcggctgcagg 1820
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>dbj|AP000845.4| Homo sapiens genomic DNA, chromosome 18p clone:RP11-705O1, complete
             sequences
          Length = 142000

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     tttttcgttttcctctctag 22
             ||||||||||||||||||||
Sbjct: 25776 tttttcgttttcctctctag 25795


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,924,545
Number of Sequences: 3902068
Number of extensions: 2924545
Number of successful extensions: 106457
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 103114
Number of HSP's gapped (non-prelim): 3387
length of query: 453
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 431
effective length of database: 17,147,199,772
effective search space: 7390443101732
effective search space used: 7390443101732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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