>MKRN1_MACEU (Q9TT91) Makorin-1|
          Length = 478

 Score = 34.3 bits (77), Expect = 0.072
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = +2

Query: 14  AAVSTTITPPSLLPESGADAMSPLLRPAVLPVCAATSGGGGGNSDKW 154
           AA  TT T       +   A SP L P V     A  GGGGG+   W
Sbjct: 5   AAPGTTATTSGAAAAAAVAAASPTLTPTVASQSPAAGGGGGGSGGGW 51

>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon)
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2167

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 13/53 (24%)
 Frame = +2

Query: 41   PSLLPESGADAMSPLLRPAVLPVC-------------AATSGGGGGNSDKWAP 160
            PSLLP S    +SP  RP+ LP+              ++ +GG GG++D +AP
Sbjct: 2007 PSLLPASD-HKVSPAPRPSSLPILPSGPIYPGLFDIRSSPTGGAGGSTDPFAP 2058

>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2161

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 13/53 (24%)
 Frame = +2

Query: 41   PSLLPESGADAMSPLLRPAVLPVC-------------AATSGGGGGNSDKWAP 160
            PSLLP S    +SP  RP+ LP+               + +GG GG++D +AP
Sbjct: 2001 PSLLPAS-EHKVSPAPRPSSLPILPSGPLYPGLFDIRGSPTGGAGGSADPFAP 2052

>SLAP2_CLOTM (Q06853) Cell surface glycoprotein 2 precursor (S-layer protein 2)|
          Length = 688

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +2

Query: 35  TPPSLLPESGADAMSPLLRPAVLPVCAAT---SGGGGG 139
           TP    P + A + +P   PAV P  +AT    GGGGG
Sbjct: 392 TPTQTPPTTTAPSQTPTQTPAVTPTQSATPSDPGGGGG 429

>SSB_XANAC (Q8PIJ2) Single-stranded DNA-binding protein (SSB)|
           (Helix-destabilizing protein)
          Length = 180

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 125 GGGGGNSDKWAPRQQRPWWGRSKQSLP 205
           GGGGG    +APR+Q+P     +QS P
Sbjct: 145 GGGGGGGQDYAPRRQQP---AQQQSAP 168

>SSB_XANCP (Q8P778) Single-stranded DNA-binding protein (SSB)|
           (Helix-destabilizing protein)
          Length = 172

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 125 GGGGGNSDKWAPRQQRPWWGRSKQSLP 205
           GGGGG    +APR+Q+P     +QS P
Sbjct: 137 GGGGGGGQDYAPRRQQP---AQQQSAP 160

>HXA3_MOUSE (P02831) Homeobox protein Hox-A3 (Hox-1.5) (MO-10)|
          Length = 443

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 10/47 (21%)
 Frame = +2

Query: 38  PPSLLPESGADAMSPLLRPAVLPVCA----------ATSGGGGGNSD 148
           PP   P  GA  + P   PA LP CA          A   G GG  D
Sbjct: 296 PPFSKPPQGAYGLPPASYPAPLPSCAPPPPPQKRYTAAGSGAGGTPD 342

>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 135 kDa subunit)
           (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130)
           (TAFII130)
          Length = 1085

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +2

Query: 38  PPSLLPESGADAMSPLLRPAVLPVCAATSGGGGGNSDKWAPRQQRP 175
           P +L    G  A  P   PAV P  AA +GG  G +   AP    P
Sbjct: 277 PATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGP 322

>ADP1_MYCPN (P11311) Adhesin P1 precursor (Cytadhesin P1) (Attachment protein)|
          Length = 1627

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 113 AATSGGGGGNSDKWAPRQQRPW 178
           A +S G GGNS+  +P   RPW
Sbjct: 335 ALSSSGSGGNSNPGSPTPWRPW 356

>RF1_SYNPX (Q7U4H2) Peptide chain release factor 1 (RF-1)|
          Length = 365

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 20  VSTTITPPSLLPESGADAMSPLLRPAVLPVCAATSGGGGGNS 145
           V T+    +++PE  ADA+   L P  L +  A SGG GG +
Sbjct: 201 VHTSTATVAVMPE--ADAVEVQLDPKDLEISTARSGGAGGQN 240

>WASP_HUMAN (P42768) Wiskott-Aldrich syndrome protein (WASp)|
          Length = 501

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +2

Query: 38  PPSLLPESGADAMSPLLRPAVLPVCAATSGGGGG 139
           PP   P SG     P L PA++P      GGG G
Sbjct: 398 PPPPPPSSGNGPAPPPLPPALVPAGGLAPGGGRG 431

>Y205_MYCPN (P75571) Hypothetical protein MPN205 (GT9_orf438V)|
          Length = 438

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 113 AATSGGGGGNSDKWAPRQQRPW 178
           A +S G GGNS+  +P   RPW
Sbjct: 244 APSSSGSGGNSNPGSPTPWRPW 265

>PHX2B_MOUSE (O35690) Paired mesoderm homeobox protein 2B (Paired-like homeobox|
           2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox)
           (NBPhox)
          Length = 314

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 92  PAVLPVCAATSGGGGGNSDKWAPRQQRP 175
           P   P C A  GGGGG S   AP    P
Sbjct: 202 PNPTPSCGANGGGGGGPSPAGAPGAAGP 229

>PHX2B_HUMAN (Q99453) Paired mesoderm homeobox protein 2B (Paired-like homeobox|
           2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox)
           (NBPhox)
          Length = 314

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 92  PAVLPVCAATSGGGGGNSDKWAPRQQRP 175
           P   P C A  GGGGG S   AP    P
Sbjct: 202 PNPTPSCGANGGGGGGPSPAGAPGAAGP 229

>YRR2_CAEEL (Q09345) Hypothetical protein R144.2|
          Length = 823

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 41  PSLLPESGADAMSPLLRPAVLPVCAATSGGG-GGNSDKWAPRQQRPWWGRSK-QSLPHQP 214
           P+  P S  +   P   PA LP+    + G  GG  ++  P+Q   W G +K Q++P  P
Sbjct: 573 PARSPSSPRNQTPP---PANLPIPGMNNAGQRGGYHNRHQPQQNARWGGANKQQNIPPPP 629

>ZN384_RAT (Q9EQJ4) Zinc finger protein 384 (Nuclear matrix transcription|
           factor 4) (Nuclear matrix protein 4) (Cas-associated
           zinc finger protein)
          Length = 579

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = +2

Query: 20  VSTTITPPSLLPESGADAMSPLLRPAVLPVCAATSGGGGGNSDKWAPRQQRPWWGRSKQS 199
           +ST +   +L P S A  + P L   V        GGGGG     AP   +P  GR K+ 
Sbjct: 142 ISTPMIVSALPPGSQALQVVPDLSKKVASTLTEEGGGGGGGGGTVAP--PKPPRGRKKKR 199

Query: 200 L 202
           +
Sbjct: 200 M 200

>GLMU_NOCFA (Q5YQ11) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 495

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/56 (28%), Positives = 21/56 (37%)
 Frame = +2

Query: 2   SHTFAAVSTTITPPSLLPESGADAMSPLLRPAVLPVCAATSGGGGGNSDKWAPRQQ 169
           SH      T    P  + +    A   +LR  V P   A SGG   N + W  R +
Sbjct: 410 SHVRTGSDTMFVAPVTVGDGAYTAAGTVLRRNVPPGALAVSGGPQKNIENWVQRHR 465

>METRN_HUMAN (Q9UJH8) Meteorin precursor|
          Length = 293

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 53  PESGADAMSPLLRPAVLPVCAATSGGGGGNSDKWAPRQQRPWWGRSKQSLPHQ 211
           P +GA   +     A+  + A   G  GG   +W PR++R  +    Q+ PHQ
Sbjct: 88  PFAGAQVFAERAGGALELLLAEGPGPAGGRCVRWGPRERRALF---LQATPHQ 137

>PSTS1_MYCTU (P15712) Phosphate-binding protein 1 precursor (PBP-1) (PstS-1)|
           (Protein antigen B) (PAB) (Antigen Ag78)
          Length = 374

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +2

Query: 14  AAVSTTITPPSLLPESGADAMSPLLRPAVLPVCAATSG 127
           AA      PPS  PE+GA A +    PA  PV  A +G
Sbjct: 20  AAAGCGSKPPSGSPETGAGAGTVATTPASSPVTLAETG 57

>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)|
           (Trinucleotide repeat-containing gene 13 protein)
          Length = 1312

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = +2

Query: 23  STTITPPSLLPESGADAMSPLLRPAVLPVCAATSGGG------GGNSDKWAPR 163
           S  +  P+  P   + ++S     A   V AATSGGG      G NS+K  P+
Sbjct: 201 SGLLASPAAAPSPSSSSVSSSSATAPSSVVAATSGGGRPGLGRGRNSNKGLPQ 253

>SYEP_DROME (P28668) Bifunctional aminoacyl-tRNA synthetase [Includes:|
            Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA
            ligase); Prolyl-tRNA synthetase (EC 6.1.1.15)
            (Proline--tRNA ligase)]
          Length = 1714

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 113  AATSGGGGGNSDKWAPRQQRP 175
            A   GGGGG S K AP++ +P
Sbjct: 1171 AGRGGGGGGGSAKKAPKEAQP 1191

>ZN384_HUMAN (Q8TF68) Zinc finger protein 384 (Nuclear matrix transcription|
           factor 4) (Nuclear matrix protein 4) (CAG repeat protein
           1) (CAS-interacting zinc finger protein)
          Length = 576

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +2

Query: 20  VSTTITPPSLLPESGADAMSPLLRPAVLPVCAATSGGGGGNSDKWAPRQQRPWWGRSKQS 199
           +S  +   +L P S A  + P L   V        GGGGG     AP+  R   GR K+ 
Sbjct: 142 ISAPMIVSALPPGSQALQVVPDLSKKVASTLTEEGGGGGGGGGSVAPKPPR---GRKKKR 198

Query: 200 L 202
           +
Sbjct: 199 M 199


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,177,327
Number of Sequences: 219361
Number of extensions: 382806
Number of successful extensions: 2049
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2035
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)