ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl25f01 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ250663.2|HVU250663 Hordeum vulgare partial mRNA for putative proteinase inhibitor (bci-7 gene) Length = 306 Score = 283 bits (143), Expect = 8e-74 Identities = 146/147 (99%) Strand = Plus / Plus Query: 15 gtcaagttcacgcctgccgaatcgaggatgagctgcgccgccccaaaagcccccgccgga 74 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gtcaagttcacgcctgccgaatcgaggatgagctgcgccgccccaaaagcccccgccgga 60 Query: 75 gaggagaagaagacgtcatggccggaggtagtgggaaagtccatcgaggaggccaaggag 134 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 61 gaggagaagaagacgtcatggccggaggtagcgggaaagtccatcgaggaggccaaggag 120 Query: 135 atcatccttaaggacatgcctgaagcg 161 ||||||||||||||||||||||||||| Sbjct: 121 atcatccttaaggacatgcctgaagcg 147
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 256 bits (129), Expect = 2e-65 Identities = 129/129 (100%) Strand = Plus / Minus Query: 33 gaatcgaggatgagctgcgccgccccaaaagcccccgccggagaggagaagaagacgtca 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 220843 gaatcgaggatgagctgcgccgccccaaaagcccccgccggagaggagaagaagacgtca 220784 Query: 93 tggccggaggtagtgggaaagtccatcgaggaggccaaggagatcatccttaaggacatg 152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 220783 tggccggaggtagtgggaaagtccatcgaggaggccaaggagatcatccttaaggacatg 220724 Query: 153 cctgaagcg 161 ||||||||| Sbjct: 220723 cctgaagcg 220715 Score = 165 bits (83), Expect = 5e-38 Identities = 116/127 (91%) Strand = Plus / Minus Query: 33 gaatcgaggatgagctgcgccgccccaaaagcccccgccggagaggagaagaagacgtca 92 |||||||||||||||||||| | ||||||||| |||||||| |||||||||||| ||||| Sbjct: 217773 gaatcgaggatgagctgcgctgacccaaaagcacccgccggtgaggagaagaagtcgtca 217714 Query: 93 tggccggaggtagtgggaaagtccatcgaggaggccaaggagatcatccttaaggacatg 152 ||||||||| ||||||| |||||||||||||| |||| |||| ||||||| ||||||||| Sbjct: 217713 tggccggagttagtggggaagtccatcgaggacgccagggaggtcatcctcaaggacatg 217654 Query: 153 cctgaag 159 ||||||| Sbjct: 217653 cctgaag 217647 Score = 121 bits (61), Expect = 7e-25 Identities = 88/97 (90%) Strand = Plus / Minus Query: 65 ccccgccggagaggagaagaagacgtcatggccggaggtagtgggaaagtccatcgagga 124 ||||||||| |||||||||||| |||||||||||||| ||||||| |||||||||||||| Sbjct: 223976 ccccgccggtgaggagaagaagtcgtcatggccggagttagtggggaagtccatcgagga 223917 Query: 125 ggccaaggagatcatccttaaggacatgcctgaagcg 161 |||| |||| ||||||| ||||| |||||||||||| Sbjct: 223916 cgccagggaggtcatcctcaaggatatgcctgaagcg 223880 Score = 105 bits (53), Expect = 4e-20 Identities = 86/97 (88%) Strand = Plus / Minus Query: 65 ccccgccggagaggagaagaagacgtcatggccggaggtagtgggaaagtccatcgagga 124 ||||||||| |||||||||||| |||| ||| ||||| ||||||| |||||||||||||| Sbjct: 225117 ccccgccggtgaggagaagaagtcgtcctgggcggagttagtggggaagtccatcgagga 225058 Query: 125 ggccaaggagatcatccttaaggacatgcctgaagcg 161 |||| | || ||||||| |||||||||||||||||| Sbjct: 225057 cgccaggaaggtcatcctcaaggacatgcctgaagcg 225021 Score = 71.9 bits (36), Expect = 6e-10 Identities = 69/80 (86%) Strand = Plus / Plus Query: 81 aagaagacgtcatggccggaggtagtgggaaagtccatcgaggaggccaaggagatcatc 140 ||||||||||| ||||||||||| || || | ||||| ||||||||||||||||||| Sbjct: 206987 aagaagacgtcttggccggaggtggtcggcctgaccatcaaggaggccaaggagatcatt 207046 Query: 141 cttaaggacatgcctgaagc 160 || ||||||| ||||||||| Sbjct: 207047 ctcaaggacaagcctgaagc 207066 Score = 48.1 bits (24), Expect = 0.008 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1 aaatactcatatcagtcaagttca 24 |||||||||||||||||||||||| Sbjct: 221036 aaatactcatatcagtcaagttca 221013 Score = 40.1 bits (20), Expect = 2.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 aaatactcatatcagtcaagttca 24 |||||||| ||||||||||||||| Sbjct: 218495 aaatactcgtatcagtcaagttca 218472
>gb|BT017006.1| Zea mays clone EK07D2310C10.c mRNA sequence Length = 531 Score = 73.8 bits (37), Expect = 1e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 78 gagaagaagacgtcatggccggaggtagtgggaaagtccatcgaggaggccaaggagatc 137 |||||||||||||| ||||||||||| ||||| | ||||||| ||||||| | ||||| | Sbjct: 115 gagaagaagacgtcgtggccggaggtggtgggcatgtccatcaaggaggcgacggagacc 174 Query: 138 atccttaaggacatgcc 154 || || ||||||||||| Sbjct: 175 attctcaaggacatgcc 191
>gb|AY112541.1| Zea mays CL44946_1 mRNA sequence Length = 509 Score = 48.1 bits (24), Expect = 0.008 Identities = 57/68 (83%) Strand = Plus / Minus Query: 87 acgtcatggccggaggtagtgggaaagtccatcgaggaggccaaggagatcatccttaag 146 ||||| ||||||||||| ||||| | ||||||| ||||||| | ||||| || || ||| Sbjct: 358 acgtcgtggccggaggtggtgggcatgtccatcaaggaggcgacggagactattctcaag 299 Query: 147 gacatgcc 154 |||||||| Sbjct: 298 gacatgcc 291
>gb|M21400.1|BLYCI1A Barley chymotrypsin inhibitor (CI-1A) mRNA, complete cds Length = 446 Score = 44.1 bits (22), Expect = 0.13 Identities = 46/54 (85%) Strand = Plus / Plus Query: 90 tcatggccggaggtagtgggaaagtccatcgaggaggccaaggagatcatcctt 143 |||||||||||||| || || | |||| |||| ||||||| |||||||||||| Sbjct: 140 tcatggccggaggtggtcgggatgtccgccgagaaggccaaagagatcatcctt 193
>ref|XM_369944.1| Magnaporthe grisea 70-15 hypothetical protein (MG06459.4) partial mRNA Length = 2781 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 atcgaggaggccaaggagat 136 |||||||||||||||||||| Sbjct: 850 atcgaggaggccaaggagat 869
>ref|XM_537053.2| PREDICTED: Canis familiaris similar to Cofilin-1 (Cofilin, non-muscle isoform) (18 kDa phosphoprotein) (p18) (LOC479927), mRNA Length = 1046 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 tcgaggaggccaaggagatc 137 |||||||||||||||||||| Sbjct: 227 tcgaggaggccaaggagatc 246
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 tcgaggaggccaaggagatc 137 |||||||||||||||||||| Sbjct: 131084 tcgaggaggccaaggagatc 131103
>ref|XM_682322.1| PREDICTED: Danio rerio similar to papilin (LOC559025), mRNA Length = 3387 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 aggaggccaaggagatcatc 140 |||||||||||||||||||| Sbjct: 179 aggaggccaaggagatcatc 198
>gb|AF333038.2| Streptomyces viridochromogenes Avilamycin A biosynthetic gene cluster, complete sequence Length = 59816 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 tcgaggaggccaaggagatc 137 |||||||||||||||||||| Sbjct: 2080 tcgaggaggccaaggagatc 2099
>gb|AC166113.3| Mus musculus BAC clone RP23-23E6 from chromosome 14, complete sequence Length = 252394 Score = 40.1 bits (20), Expect = 2.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 123 gaggccaaggagatcatccttaaggaca 150 ||||||||| ||| |||||||||||||| Sbjct: 98517 gaggccaagcagaacatccttaaggaca 98490
>gb|AC168217.2| Mus musculus BAC clone RP24-498P8 from chromosome 9, complete sequence Length = 171426 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 115 ccatcgaggaggccaagga 133 ||||||||||||||||||| Sbjct: 168478 ccatcgaggaggccaagga 168496
>ref|XM_519405.1| PREDICTED: Pan troglodytes similar to myotrophin; V-1 protein (LOC463756), mRNA Length = 450 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 gccggagaggagaagaaga 87 ||||||||||||||||||| Sbjct: 209 gccggagaggagaagaaga 191
>ref|NM_145808.1| Homo sapiens myotrophin (MTPN), mRNA Length = 3770 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 gccggagaggagaagaaga 87 ||||||||||||||||||| Sbjct: 128 gccggagaggagaagaaga 110
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 38.2 bits (19), Expect = 7.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 111 aagtccatcgaggaggccaagga 133 |||| |||||||||||||||||| Sbjct: 1604412 aagtacatcgaggaggccaagga 1604390
>gb|AY492287.1| Turicella otitidis strain CIP 104075 RpoB (rpoB) gene, partial cds Length = 3250 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 117 atcgaggaggccaaggaga 135 ||||||||||||||||||| Sbjct: 295 atcgaggaggccaaggaga 313
>ref|XM_426217.1| PREDICTED: Gallus gallus similar to carbamoylphosphate synthetase 2/aspartate transcarbamylase/dihydroorotase; CAD trifunctional protein; multifunctional protein CAD (LOC428659), mRNA Length = 5274 Score = 38.2 bits (19), Expect = 7.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 111 aagtccatcgaggaggccaaggagatc 137 |||| |||| ||||||||||||||||| Sbjct: 4234 aagttcatccaggaggccaaggagatc 4260
>gb|BC028093.1| Homo sapiens myotrophin, mRNA (cDNA clone MGC:40373 IMAGE:3876632), complete cds Length = 780 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 gccggagaggagaagaaga 87 ||||||||||||||||||| Sbjct: 154 gccggagaggagaagaaga 136
>ref|XM_566954.1| Cryptococcus neoformans var. neoformans JEC21 aspartate carbamoyltransferase (CNA06000) partial mRNA Length = 7160 Score = 38.2 bits (19), Expect = 7.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 111 aagtccatcgaggaggccaagga 133 |||| |||||||||||||||||| Sbjct: 3871 aagtacatcgaggaggccaagga 3893
>ref|XM_547419.2| PREDICTED: Canis familiaris similar to quiescin Q6 isoform a (LOC490299), mRNA Length = 2394 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 gagaggagaagaagacgtc 91 ||||||||||||||||||| Sbjct: 59 gagaggagaagaagacgtc 77
>emb|CR732608.1|CNS0GS85 Tetraodon nigroviridis full-length cDNA Length = 1429 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 119 cgaggaggccaaggagatc 137 ||||||||||||||||||| Sbjct: 204 cgaggaggccaaggagatc 222
>emb|CR725571.2|CNS0GMSP Tetraodon nigroviridis full-length cDNA Length = 1580 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 119 cgaggaggccaaggagatc 137 ||||||||||||||||||| Sbjct: 362 cgaggaggccaaggagatc 380
>emb|CR683457.2|CNS0FQB1 Tetraodon nigroviridis full-length cDNA Length = 1220 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 119 cgaggaggccaaggagatc 137 ||||||||||||||||||| Sbjct: 358 cgaggaggccaaggagatc 376
>emb|CR654263.2|CNS0F3ST Tetraodon nigroviridis full-length cDNA Length = 1415 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 119 cgaggaggccaaggagatc 137 ||||||||||||||||||| Sbjct: 209 cgaggaggccaaggagatc 227
>emb|CR650638.2|CNS0F104 Tetraodon nigroviridis full-length cDNA Length = 1465 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 119 cgaggaggccaaggagatc 137 ||||||||||||||||||| Sbjct: 218 cgaggaggccaaggagatc 236
>emb|CR639903.2|CNS0ESPX Tetraodon nigroviridis full-length cDNA Length = 1430 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 119 cgaggaggccaaggagatc 137 ||||||||||||||||||| Sbjct: 214 cgaggaggccaaggagatc 232
>gb|AC144428.1| Pan troglodytes BAC clone RP43-2C19 from 7, complete sequence Length = 208183 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 gccggagaggagaagaaga 87 ||||||||||||||||||| Sbjct: 1958 gccggagaggagaagaaga 1976
>emb|CR634333.2|CNS0EOF7 Tetraodon nigroviridis full-length cDNA Length = 1557 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 119 cgaggaggccaaggagatc 137 ||||||||||||||||||| Sbjct: 345 cgaggaggccaaggagatc 363
>emb|CR634681.2|CNS0EOOV Tetraodon nigroviridis full-length cDNA Length = 1533 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 119 cgaggaggccaaggagatc 137 ||||||||||||||||||| Sbjct: 328 cgaggaggccaaggagatc 346
>emb|CR633905.1|CNS0EO3B Tetraodon nigroviridis full-length cDNA Length = 1421 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 119 cgaggaggccaaggagatc 137 ||||||||||||||||||| Sbjct: 210 cgaggaggccaaggagatc 228
>gb|BC013989.1| Homo sapiens cDNA clone IMAGE:3641578, **** WARNING: chimeric clone **** Length = 4793 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 gccggagaggagaagaaga 87 ||||||||||||||||||| Sbjct: 256 gccggagaggagaagaaga 238
>gb|AF106075.1| Homo sapiens V-1 protein mRNA, complete cds Length = 723 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 gccggagaggagaagaaga 87 ||||||||||||||||||| Sbjct: 105 gccggagaggagaagaaga 87
>ref|NM_007567.1| Mus musculus bassoon (Bsn), mRNA Length = 11936 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 115 ccatcgaggaggccaagga 133 ||||||||||||||||||| Sbjct: 10148 ccatcgaggaggccaagga 10166
>gb|AE008812.1| Salmonella typhimurium LT2, section 116 of 220 of the complete genome Length = 23865 Score = 38.2 bits (19), Expect = 7.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 56 cccaaaagcccccgccggagagg 78 |||||||||||||||||| |||| Sbjct: 16824 cccaaaagcccccgccggtgagg 16802
>emb|AL834231.1|HSM805255 Homo sapiens mRNA; cDNA DKFZp761E1322 (from clone DKFZp761E1322) Length = 3770 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 gccggagaggagaagaaga 87 ||||||||||||||||||| Sbjct: 128 gccggagaggagaagaaga 110
>dbj|AK056225.1| Homo sapiens cDNA FLJ31663 fis, clone NT2RI2004504, highly similar to MYOTROPHIN Length = 2156 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 gccggagaggagaagaaga 87 ||||||||||||||||||| Sbjct: 159 gccggagaggagaagaaga 141
>gb|AY028171.1| Leishmania donovani extra chromosome XC290, partial sequence Length = 44273 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 48 tgcgccgccccaaaagccc 66 ||||||||||||||||||| Sbjct: 32042 tgcgccgccccaaaagccc 32060
>gb|U68765.1|STU68765 Salmonella typhimurium 5'-phosphoribosylglycinamide transformylase (purN) and 5'-phosphoribosyl-5-aminoimidazole synthetase (purI) genes, complete cds Length = 3391 Score = 38.2 bits (19), Expect = 7.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 56 cccaaaagcccccgccggagagg 78 |||||||||||||||||| |||| Sbjct: 1826 cccaaaagcccccgccggtgagg 1848
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 7.8 Identities = 25/27 (92%) Strand = Plus / Minus Query: 83 gaagacgtcatggccggaggtagtggg 109 ||||||||| ||||||||||| ||||| Sbjct: 22236771 gaagacgtcgtggccggaggtggtggg 22236745 Score = 38.2 bits (19), Expect = 7.8 Identities = 25/27 (92%) Strand = Plus / Minus Query: 83 gaagacgtcatggccggaggtagtggg 109 ||||||||| ||||||||||| ||||| Sbjct: 22232067 gaagacgtcgtggccggaggtggtggg 22232041 Score = 38.2 bits (19), Expect = 7.8 Identities = 25/27 (92%) Strand = Plus / Minus Query: 83 gaagacgtcatggccggaggtagtggg 109 ||||||||| ||||||||||| ||||| Sbjct: 22227438 gaagacgtcgtggccggaggtggtggg 22227412
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 cgccggagaggagaagaag 86 ||||||||||||||||||| Sbjct: 553352 cgccggagaggagaagaag 553370
>gb|AC154767.2| Mus musculus BAC clone RP23-105P19 from chromosome 13, complete sequence Length = 189362 Score = 38.2 bits (19), Expect = 7.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 136 tcatccttaaggacatgcctgaa 158 ||||| ||||||||||||||||| Sbjct: 63602 tcatctttaaggacatgcctgaa 63580
>gb|AC145938.4| Pan troglodytes BAC clone RP43-18H20 from chromosome 7, complete sequence Length = 178210 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 gccggagaggagaagaaga 87 ||||||||||||||||||| Sbjct: 138845 gccggagaggagaagaaga 138863
>gb|AC015987.6| Homo sapiens chromosome 7 clone RP11-207O19, complete sequence Length = 181882 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 gccggagaggagaagaaga 87 ||||||||||||||||||| Sbjct: 171157 gccggagaggagaagaaga 171175
>gb|AC024083.3|AC024083 Homo sapiens chromosome 7 clone RP11-24I23, complete sequence Length = 152283 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 gccggagaggagaagaaga 87 ||||||||||||||||||| Sbjct: 72838 gccggagaggagaagaaga 72856
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 119 cgaggaggccaaggagatc 137 ||||||||||||||||||| Sbjct: 1061080 cgaggaggccaaggagatc 1061098
>dbj|AK129141.1| Mus musculus mRNA for mKIAA0434 protein Length = 7506 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 115 ccatcgaggaggccaagga 133 ||||||||||||||||||| Sbjct: 1833 ccatcgaggaggccaagga 1851
>gb|AC137678.11| Mus musculus chromosome 9, clone RP24-484G16, complete sequence Length = 172337 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 115 ccatcgaggaggccaagga 133 ||||||||||||||||||| Sbjct: 119233 ccatcgaggaggccaagga 119215
>dbj|AK058739.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-G06, full insert sequence Length = 451 Score = 38.2 bits (19), Expect = 7.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 83 gaagacgtcatggccggaggtagtggg 109 ||||||||| ||||||||||| ||||| Sbjct: 132 gaagacgtcgtggccggaggtggtggg 158
>emb|CR925800.7| Zebrafish DNA sequence from clone ZFOS-476E6 in linkage group 4, complete sequence Length = 19867 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 aggaggccaaggagatcat 139 ||||||||||||||||||| Sbjct: 3205 aggaggccaaggagatcat 3187
>emb|Y17038.1|MMY17038 Mus musculus bassoon gene, exon 6 to 11 Length = 6000 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 115 ccatcgaggaggccaagga 133 ||||||||||||||||||| Sbjct: 1716 ccatcgaggaggccaagga 1734
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 7.8 Identities = 25/27 (92%) Strand = Plus / Minus Query: 83 gaagacgtcatggccggaggtagtggg 109 ||||||||| ||||||||||| ||||| Sbjct: 22165116 gaagacgtcgtggccggaggtggtggg 22165090 Score = 38.2 bits (19), Expect = 7.8 Identities = 25/27 (92%) Strand = Plus / Minus Query: 83 gaagacgtcatggccggaggtagtggg 109 ||||||||| ||||||||||| ||||| Sbjct: 22160412 gaagacgtcgtggccggaggtggtggg 22160386 Score = 38.2 bits (19), Expect = 7.8 Identities = 25/27 (92%) Strand = Plus / Minus Query: 83 gaagacgtcatggccggaggtagtggg 109 ||||||||| ||||||||||| ||||| Sbjct: 22155783 gaagacgtcgtggccggaggtggtggg 22155757
>emb|AL731742.3|CNS08C7R Oryza sativa chromosome 12, . BAC OJ1123_B09 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155585 Score = 38.2 bits (19), Expect = 7.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 83 gaagacgtcatggccggaggtagtggg 109 ||||||||| ||||||||||| ||||| Sbjct: 25572 gaagacgtcgtggccggaggtggtggg 25598 Score = 38.2 bits (19), Expect = 7.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 83 gaagacgtcatggccggaggtagtggg 109 ||||||||| ||||||||||| ||||| Sbjct: 20943 gaagacgtcgtggccggaggtggtggg 20969 Score = 38.2 bits (19), Expect = 7.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 83 gaagacgtcatggccggaggtagtggg 109 ||||||||| ||||||||||| ||||| Sbjct: 16239 gaagacgtcgtggccggaggtggtggg 16265
>gb|AC087276.13| Homo sapiens chromosome 11, clone RP11-484D2, complete sequence Length = 204109 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 71 cggagaggagaagaagacg 89 ||||||||||||||||||| Sbjct: 118500 cggagaggagaagaagacg 118518 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,448,793 Number of Sequences: 3902068 Number of extensions: 1448793 Number of successful extensions: 110669 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110373 Number of HSP's gapped (non-prelim): 295 length of query: 161 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 139 effective length of database: 17,147,199,772 effective search space: 2383460768308 effective search space used: 2383460768308 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
