Clone Name | bastl25e09 |
---|---|
Clone Library Name | barley_pub |
>SASH1_MOUSE (P59808) SAM and SH3 domain-containing protein 1| Length = 1230 Score = 36.6 bits (83), Expect = 0.033 Identities = 27/91 (29%), Positives = 37/91 (40%) Frame = +3 Query: 153 D*CKMVTVHGFANGTSDGTANRKIKRLFNSSERKNPTNFQFERHVARLESRQQQQPRRCI 332 D K +H N T R K+L E K P+ E HV E+ Q R + Sbjct: 247 DSVKFKRLHKLVNST-----RRVRKKLIRVEEMKKPSAEGGEEHV--FENSPVQDERSAL 299 Query: 333 FTTILPIEFFHTSSEPTSPEDSLDSASSPPS 425 ++ + FF+ S PED DS + PS Sbjct: 300 YSGVHKKPFFYDGSPEKPPEDDADSLTPSPS 330
>CAN5_MOUSE (O08688) Calpain-5 (EC 3.4.22.-) (nCL-3)| Length = 640 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 12/53 (22%) Frame = -3 Query: 439 CKKIIDGGEDAESR------------LSSGDVGSDEVWKNSIGKIVVKIHRLG 317 C + +DGG A++ L+ GD+ +DE +N + + V+K+H G Sbjct: 173 CYQALDGGNTADALVDFTGGVSEPIDLTEGDLATDEAKRNQLFERVLKVHSRG 225
>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22| Length = 1010 Score = 28.9 bits (63), Expect = 6.9 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = -1 Query: 159 ISRWPPRQGGGRSCRSAPLRSQS 91 +SR PPR+G GRS P RS+S Sbjct: 749 LSRTPPRRGRGRSYSRTPSRSRS 771
>PLCB_HUMAN (O15120) 1-acyl-sn-glycerol-3-phosphate acyltransferase beta (EC| 2.3.1.51) (1-AGP acyltransferase 2) (1-AGPAT 2) (Lysophosphatidic acid acyltransferase-beta) (LPAAT-beta) (1-acylglycerol-3-phosphate O-acyltransferase 2) Length = 278 Score = 28.5 bits (62), Expect = 9.1 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Frame = -3 Query: 274 NWKLVGFFL-SDELKRRLIFLLAVPSLVPLANPCTVTILHQSVAAAAGGREELPLRSAPI 98 N ++G+F+ S + L F + P + A PC + HQS+ G E LP R I Sbjct: 59 NMSIIGWFVRSFKYFYGLRFEVRDPRRLQEARPCVIVSNHQSILDMMGLMEVLPERCVQI 118 Query: 97 PVR 89 R Sbjct: 119 AKR 121
>CAC1G_HUMAN (O43497) Voltage-dependent T-type calcium channel alpha-1G subunit| (Voltage-gated calcium channel alpha subunit Cav3.1) (Cav3.1c) (NBR13) Length = 2377 Score = 28.5 bits (62), Expect = 9.1 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -1 Query: 195 YHWQIHAQSPFCISRWPPRQGGGRSCRSAP 106 Y + +SPF S+ PR+ G RSCRS P Sbjct: 259 YQTENEDESPFICSQ--PRENGMRSCRSVP 286
>CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alpha-1G subunit| (Voltage-gated calcium channel alpha subunit Cav3.1) Length = 2254 Score = 28.5 bits (62), Expect = 9.1 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -1 Query: 195 YHWQIHAQSPFCISRWPPRQGGGRSCRSAP 106 Y + +SPF S+ PR+ G RSCRS P Sbjct: 259 YQTENEDESPFICSQ--PRENGMRSCRSVP 286
>UBP53_HUMAN (Q70EK8) Inactive ubiquitin carboxyl-terminal hydrolase 53| (Ubiquitin-specific peptidase 53) Length = 1073 Score = 28.5 bits (62), Expect = 9.1 Identities = 17/63 (26%), Positives = 33/63 (52%) Frame = +3 Query: 228 RLFNSSERKNPTNFQFERHVARLESRQQQQPRRCIFTTILPIEFFHTSSEPTSPEDSLDS 407 +LF SS + P + H+ + + ++ ++P C F+ L IE +SE T +D+ Sbjct: 792 KLFPSSSLQIPKDHNAREHIHQSDEQKLEKPNECKFSEWLNIE----NSERTGLPFHVDN 847 Query: 408 ASS 416 ++S Sbjct: 848 SAS 850
>MRAZ_PSEU2 (Q4ZNY1) Protein mraZ| Length = 151 Score = 28.5 bits (62), Expect = 9.1 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 5/72 (6%) Frame = -3 Query: 412 DAESRLSSGDVGSDEVWKNSIGKIVVKIHRLGCCCCLDSRRAT*RSNWKLVGFFLSD--- 242 DA+ RL+ DE+ S G+++V I + C CL S W+L+ L D Sbjct: 11 DAKGRLAMPSRYRDELDSRSAGQLIVTIDAVDPCLCLYP-----LSEWELIEAKLRDLAT 65 Query: 241 --ELKRRLIFLL 212 E RRL LL Sbjct: 66 FREENRRLQRLL 77
>MRAZ_PSE14 (Q48EE9) Protein mraZ| Length = 151 Score = 28.5 bits (62), Expect = 9.1 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 5/72 (6%) Frame = -3 Query: 412 DAESRLSSGDVGSDEVWKNSIGKIVVKIHRLGCCCCLDSRRAT*RSNWKLVGFFLSD--- 242 DA+ RL+ DE+ S G+++V I + C CL S W+L+ L D Sbjct: 11 DAKGRLAMPSRYRDELDSRSAGQLIVTIDAVDPCLCLYP-----LSEWELIEAKLRDLAT 65 Query: 241 --ELKRRLIFLL 212 E RRL LL Sbjct: 66 FREENRRLQRLL 77 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,893,269 Number of Sequences: 219361 Number of extensions: 1260153 Number of successful extensions: 3792 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 3646 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3787 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)