ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl25e06 |
|---|---|
| Clone Library Name | barley_pub |
>SYV_ARATH (P93736) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 1108 Score = 81.6 bits (200), Expect = 1e-15 Identities = 33/46 (71%), Positives = 40/46 (86%) Frame = +3 Query: 357 ADDENPEDFIDPETPSGQKKSLAPXMAKQYSPSTVEKSWYAWWESA 494 A +ENPEDF+DPETP G++K L+ MAKQYSP+TVEKSWYAWWE + Sbjct: 111 ASEENPEDFVDPETPLGERKRLSSQMAKQYSPATVEKSWYAWWEKS 156
>SYV_FUGRU (P49696) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 1217 Score = 46.2 bits (108), Expect = 5e-05 Identities = 18/37 (48%), Positives = 22/37 (59%) Frame = +3 Query: 387 DPETPSGQKKSLAPXMAKQYSPSTVEKSWYAWWESAG 497 D TPSG+KK + + YSP VE +WY WWE G Sbjct: 230 DIPTPSGEKKDVVSPLPDSYSPQYVEAAWYPWWEKQG 266
>SYV_MOUSE (Q9Z1Q9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) (Protein G7a) Length = 1263 Score = 45.8 bits (107), Expect = 6e-05 Identities = 18/37 (48%), Positives = 22/37 (59%) Frame = +3 Query: 387 DPETPSGQKKSLAPXMAKQYSPSTVEKSWYAWWESAG 497 D TP G+KK ++ M YSP VE +WY WWE G Sbjct: 280 DLPTPPGEKKDVSGAMPDSYSPQYVEAAWYPWWERQG 316
>SYV_RAT (Q04462) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 1264 Score = 45.8 bits (107), Expect = 6e-05 Identities = 18/37 (48%), Positives = 22/37 (59%) Frame = +3 Query: 387 DPETPSGQKKSLAPXMAKQYSPSTVEKSWYAWWESAG 497 D TP G+KK ++ M YSP VE +WY WWE G Sbjct: 281 DLPTPPGEKKDVSGTMPDSYSPQYVEAAWYPWWERQG 317
>SYV_HUMAN (P26640) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) (Protein G7a) Length = 1264 Score = 45.1 bits (105), Expect = 1e-04 Identities = 18/37 (48%), Positives = 22/37 (59%) Frame = +3 Query: 387 DPETPSGQKKSLAPXMAKQYSPSTVEKSWYAWWESAG 497 D TP G+KK ++ M YSP VE +WY WWE G Sbjct: 281 DLPTPPGEKKDVSGPMPDSYSPRYVEAAWYPWWEQQG 317
>SYV_NEUCR (P28350) Valyl-tRNA synthetase, mitochondrial precursor (EC| 6.1.1.9) (Valine--tRNA ligase) (ValRS) Length = 1093 Score = 40.8 bits (94), Expect = 0.002 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 3/40 (7%) Frame = +3 Query: 387 DPETPSGQKK---SLAPXMAKQYSPSTVEKSWYAWWESAG 497 + TP+G+KK S Y+PS VE +WY WWE AG Sbjct: 118 EDSTPAGEKKVIQSFEHPHFSAYNPSAVEAAWYQWWEKAG 157
>SYV_YEAST (P07806) Valyl-tRNA synthetase, mitochondrial precursor (EC| 6.1.1.9) (Valine--tRNA ligase) (ValRS) Length = 1104 Score = 39.3 bits (90), Expect = 0.006 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Frame = +3 Query: 378 DFIDPETPSGQKK---SLAPXMAKQYSPSTVEKSWYAWWESAG 497 +FID P G+KK SL K Y+P+ VE SWY WW G Sbjct: 124 EFIDKTVP-GEKKILVSLDDPALKAYNPANVESSWYDWWIKTG 165
>SYV_SCHPO (O75005) Probable valyl-tRNA synthetase, mitochondrial precursor| (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS) Length = 980 Score = 37.0 bits (84), Expect = 0.029 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%) Frame = +3 Query: 378 DFIDPETPSGQKKSL----APXMAKQYSPSTVEKSWYAWWESAG 497 ++++ TP G+KK L +P + K Y+P VE +WY WW +G Sbjct: 73 EYVEKTTP-GEKKVLQDLDSPAL-KSYNPKAVESAWYDWWVKSG 114
>SYV_THIDA (Q3SL86) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 912 Score = 36.2 bits (82), Expect = 0.050 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = +3 Query: 432 MAKQYSPSTVEKSWYAWWESAG 497 +AK + P+ +EK WYA WESAG Sbjct: 3 LAKSFEPAEIEKRWYARWESAG 24
>SYV_DEHE1 (Q3Z9C5) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 880 Score = 32.3 bits (72), Expect = 0.72 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +3 Query: 426 PXMAKQYSPSTVEKSWYAWWESAG 497 P MAK Y + VEK WY +W G Sbjct: 8 PEMAKAYEAAEVEKKWYQYWMEKG 31
>SYV_CHRVO (Q7NUM8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 939 Score = 32.3 bits (72), Expect = 0.72 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +3 Query: 432 MAKQYSPSTVEKSWYAWWESAG 497 +AK Y P +E+ WY WE AG Sbjct: 4 LAKSYEPGDLERRWYQHWEQAG 25
>SYV_GEOSL (Q74BJ6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 887 Score = 32.0 bits (71), Expect = 0.94 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +3 Query: 432 MAKQYSPSTVEKSWYAWWESAG 497 +AK Y P+ VE+ WY WE G Sbjct: 6 LAKVYEPTAVERKWYETWEQEG 27
>SYV_NITEU (Q82X51) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 918 Score = 31.6 bits (70), Expect = 1.2 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +3 Query: 432 MAKQYSPSTVEKSWYAWWESAG 497 +AK + P +E WY+ WE+AG Sbjct: 3 LAKSFDPKEIETRWYSTWETAG 24
>SYV_DEHSC (Q3ZZG9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 880 Score = 31.2 bits (69), Expect = 1.6 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +3 Query: 426 PXMAKQYSPSTVEKSWYAWW 485 P MAK Y + VEK WY +W Sbjct: 8 PEMAKAYEAAEVEKKWYQYW 27
>SYV_CARHZ (Q3AF87) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 878 Score = 30.4 bits (67), Expect = 2.7 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = +3 Query: 444 YSPSTVEKSWYAWWESAG 497 YSP VE+ WY +WE G Sbjct: 9 YSPQEVERKWYKYWEENG 26
>SYV_AZOSE (Q5NXL5) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 948 Score = 30.4 bits (67), Expect = 2.7 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +3 Query: 432 MAKQYSPSTVEKSWYAWWESAG 497 +AK + P+ +E WY WES G Sbjct: 3 LAKSFEPAAIEARWYPEWESRG 24
>UPPS2_CORGL (Q8NNC1) Undecaprenyl pyrophosphate synthetase 2 (EC 2.5.1.31) (UPP| synthetase 2) (Di-trans,poly-cis-decaprenylcistransferase 2) (Undecaprenyl diphosphate synthase 2) (UDS 2) Length = 243 Score = 30.4 bits (67), Expect = 2.7 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = +1 Query: 373 PKISLILRPLVGRRNRLHLXWLSSIAQVQWKNRGMPGGSQQD 498 P + L LRP +R L W S+ A++ ++++ P +QQD Sbjct: 184 PDVDLFLRPSGEKRTSNFLLWQSAYAEMVYQDKLFPDFTQQD 225
>SYV_METCA (Q606C1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 921 Score = 30.0 bits (66), Expect = 3.6 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +3 Query: 432 MAKQYSPSTVEKSWYAWWESAG 497 M K Y P +E+ WY WE++G Sbjct: 1 MDKVYEPHAIEQRWYQHWEASG 22
>SYV_PSEU2 (Q4ZXI0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 948 Score = 30.0 bits (66), Expect = 3.6 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +3 Query: 432 MAKQYSPSTVEKSWYAWWES 491 M K Y P +E SWY WES Sbjct: 1 MDKTYQPHAIETSWYQTWES 20
>SYV_PSESM (Q887M3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 948 Score = 30.0 bits (66), Expect = 3.6 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +3 Query: 432 MAKQYSPSTVEKSWYAWWES 491 M K Y P +E SWY WES Sbjct: 1 MDKTYQPHAIETSWYQTWES 20
>SYV_PSEF5 (Q4KHT9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 948 Score = 30.0 bits (66), Expect = 3.6 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +3 Query: 432 MAKQYSPSTVEKSWYAWWES 491 M K Y P +E SWY WES Sbjct: 1 MDKTYQPHAIETSWYQTWES 20
>SYV_PSE14 (Q48MF2) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 948 Score = 30.0 bits (66), Expect = 3.6 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +3 Query: 432 MAKQYSPSTVEKSWYAWWES 491 M K Y P +E SWY WES Sbjct: 1 MDKTYQPHAIETSWYQTWES 20
>SYV_PSEAE (Q9HXH0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 950 Score = 30.0 bits (66), Expect = 3.6 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +3 Query: 432 MAKQYSPSTVEKSWYAWWES 491 M K Y P +E SWY WES Sbjct: 1 MDKTYQPHAIETSWYETWES 20
>SYLA_AQUAE (O66680) Leucyl-tRNA synthetase alpha subunit (EC 6.1.1.4)| (Leucine--tRNA ligase alpha subunit) (LeuRS) Length = 634 Score = 29.6 bits (65), Expect = 4.7 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +3 Query: 432 MAKQYSPSTVEKSWYAWWESAG 497 M K+++P +EK W WE AG Sbjct: 1 MMKEFNPREIEKKWQKRWEEAG 22
>SYV_THEMA (Q9X2D7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 865 Score = 29.6 bits (65), Expect = 4.7 Identities = 8/22 (36%), Positives = 15/22 (68%) Frame = +3 Query: 432 MAKQYSPSTVEKSWYAWWESAG 497 ++ +Y+P+ +E WY +WE G Sbjct: 4 LSTRYNPAEIETKWYRYWEEKG 25
>SYV_XANCP (Q8PCR7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 944 Score = 29.6 bits (65), Expect = 4.7 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +3 Query: 432 MAKQYSPSTVEKSWYAWWESAG 497 +A Y PS+ E YA WESAG Sbjct: 4 LASSYDPSSFESRLYAQWESAG 25
>SYV_XANC8 (Q4UQP3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 944 Score = 29.6 bits (65), Expect = 4.7 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +3 Query: 432 MAKQYSPSTVEKSWYAWWESAG 497 +A Y PS+ E YA WESAG Sbjct: 4 LASSYDPSSFESRLYAQWESAG 25
>SYV_PSEPK (Q88P76) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 948 Score = 29.6 bits (65), Expect = 4.7 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +3 Query: 432 MAKQYSPSTVEKSWYAWWES 491 M K Y P +E SWY WES Sbjct: 1 MDKTYQPHAIETSWYNTWES 20
>SYV_NITOC (Q3JC50) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 929 Score = 29.6 bits (65), Expect = 4.7 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +3 Query: 432 MAKQYSPSTVEKSWYAWWESAG 497 M K Y+P +E+ WY WE G Sbjct: 1 MDKNYNPQAIEQYWYQIWEQKG 22
>SYV_ACIAD (Q6F8F0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 971 Score = 29.3 bits (64), Expect = 6.1 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = +3 Query: 423 APXMAKQYSPSTVEKSWYAWWESAG 497 A +A Y P+ +E+ WY WE G Sbjct: 13 AQNIATTYDPTDIERKWYQIWEEKG 37
>UPPS2_CORDI (P60481) Undecaprenyl pyrophosphate synthetase 2 (EC 2.5.1.31) (UPP| synthetase 2) (Di-trans,poly-cis-decaprenylcistransferase 2) (Undecaprenyl diphosphate synthase 2) (UDS 2) Length = 245 Score = 28.9 bits (63), Expect = 7.9 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +1 Query: 373 PKISLILRPLVGRRNRLHLXWLSSIAQVQWKNRGMPGGSQQD 498 P + L LRP +R L W S+ A++ ++N+ P + +D Sbjct: 185 PDVDLFLRPSGEKRTSNFLLWQSAYAEMVYQNKLFPDYTPED 226
>SYV_BACSK (Q5WEQ4) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 880 Score = 28.9 bits (63), Expect = 7.9 Identities = 9/18 (50%), Positives = 11/18 (61%) Frame = +3 Query: 432 MAKQYSPSTVEKSWYAWW 485 M +Y PS EK WY +W Sbjct: 7 MPTKYDPSATEKKWYTYW 24
>SYV_RALSO (Q8XX80) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 968 Score = 28.9 bits (63), Expect = 7.9 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = +3 Query: 432 MAKQYSPSTVEKSWYAWWESAG 497 +AK + P+ +E+ W A WE+ G Sbjct: 8 LAKSFEPAAIEQKWSAAWEAMG 29
>SYV_YERPS (Q66F11) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 965 Score = 28.9 bits (63), Expect = 7.9 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +3 Query: 396 TPSGQKKSLAPXMAKQYSPSTVEKSWYAWWESAG 497 TPS K+ P + K YSP +E+ Y WE G Sbjct: 4 TPSHINKT-EPSLDKTYSPQEIEQPLYEHWEKQG 36
>SYV_YERPE (Q8ZBH1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 965 Score = 28.9 bits (63), Expect = 7.9 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +3 Query: 396 TPSGQKKSLAPXMAKQYSPSTVEKSWYAWWESAG 497 TPS K+ P + K YSP +E+ Y WE G Sbjct: 4 TPSHINKT-EPSLDKTYSPQEIEQPLYEHWEKQG 36
>SYV_FUSNN (Q8RHK3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 887 Score = 28.9 bits (63), Expect = 7.9 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +3 Query: 438 KQYSPSTVEKSWYAWWESA 494 K YSP+ +E+ WY WE + Sbjct: 6 KNYSPNEIEEKWYKIWEDS 24
>SYV_CLOAB (Q97GG8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 881 Score = 28.9 bits (63), Expect = 7.9 Identities = 11/22 (50%), Positives = 11/22 (50%) Frame = +3 Query: 432 MAKQYSPSTVEKSWYAWWESAG 497 MAK Y P E Y WWE G Sbjct: 7 MAKTYDPKEFEDRIYKWWEEEG 28
>SYV_PELCD (Q3A253) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 899 Score = 28.9 bits (63), Expect = 7.9 Identities = 10/26 (38%), Positives = 13/26 (50%) Frame = +3 Query: 420 LAPXMAKQYSPSTVEKSWYAWWESAG 497 + P + K Y P VE WY +W G Sbjct: 15 MEPKLPKGYEPHDVEAKWYEFWTENG 40
>SYV_SPHEL (Q7X2N3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 811 Score = 28.9 bits (63), Expect = 7.9 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = +3 Query: 432 MAKQYSPSTVEKSWYAWWESAG 497 + K + P+ +E WYA WE G Sbjct: 4 LPKTFDPAEIESRWYAHWEDEG 25 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,665,019 Number of Sequences: 219361 Number of extensions: 465893 Number of successful extensions: 1565 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 1548 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1565 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
