ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl25e01 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 72.4 bits (176), Expect = 4e-13 Identities = 41/95 (43%), Positives = 55/95 (57%), Gaps = 9/95 (9%) Frame = +2 Query: 173 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGV---------DEPFAW 325 RG VK V SG +++ G + PPE+ I LS + A LARR V DEP+A+ Sbjct: 21 RGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAVAQPDAKDTPDEPWAF 80 Query: 326 ESRGFLRKLCVGKEVTFRVDYTAPNIGREFGTVYL 430 +R FLRK +GKEV F ++ P GRE+G +YL Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYL 114 Score = 38.9 bits (89), Expect = 0.005 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 10/83 (12%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 328 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 329 SRGFLRKLCVGKEVTFRVDYTAP 397 +R FLRK +GK+V VDY P Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424
>SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (4SNc-Tudor domain protein) Length = 897 Score = 72.0 bits (175), Expect = 6e-13 Identities = 43/107 (40%), Positives = 59/107 (55%), Gaps = 9/107 (8%) Frame = +2 Query: 137 IMASNTGASGWLRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRG----- 301 + +S A RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 9 VQSSQASAPQLQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGALARRAIQGQP 68 Query: 302 ----GVDEPFAWESRGFLRKLCVGKEVTFRVDYTAPNIGREFGTVYL 430 DEP+A+++R F+RK +GKEV F V+ P GRE+G VYL Sbjct: 69 DTKDTPDEPWAFQAREFMRKKVIGKEVCFTVENKTPQ-GREYGMVYL 114 Score = 36.2 bits (82), Expect = 0.034 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 11/81 (13%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR-----------RGGVDEPFAW 325 KV V + D +++ K K+I LS + PRL R D P+ + Sbjct: 347 KVMQVVNADAIVV----KLNSGEYKTIHLSSIRPPRLEGEEKNKDKDKRFRPLYDIPYMF 402 Query: 326 ESRGFLRKLCVGKEVTFRVDY 388 E+R FLRK +GK+V VDY Sbjct: 403 EAREFLRKKLIGKKVNVTVDY 423
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 72.0 bits (175), Expect = 6e-13 Identities = 45/114 (39%), Positives = 62/114 (54%), Gaps = 15/114 (13%) Frame = +2 Query: 134 AIMASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR 295 A A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LAR Sbjct: 2 ASSAQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLAR 61 Query: 296 RGGV---------DEPFAWESRGFLRKLCVGKEVTFRVDYTAPNIGREFGTVYL 430 R DEP+A+ +R FLRK +GKEV F ++ P GRE+G +YL Sbjct: 62 RAAATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYL 114 Score = 38.1 bits (87), Expect = 0.009 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 10/83 (12%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 328 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 401 Query: 329 SRGFLRKLCVGKEVTFRVDYTAP 397 +R FLRK +GK+V VDY P Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 71.6 bits (174), Expect = 7e-13 Identities = 44/111 (39%), Positives = 61/111 (54%), Gaps = 15/111 (13%) Frame = +2 Query: 143 ASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGG 304 A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 4 AQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAA 63 Query: 305 V---------DEPFAWESRGFLRKLCVGKEVTFRVDYTAPNIGREFGTVYL 430 DEP+A+ +R FLRK +GKEV F ++ P GRE+G +YL Sbjct: 64 ATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYL 113 Score = 38.5 bits (88), Expect = 0.007 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 10/83 (12%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 328 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 345 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 400 Query: 329 SRGFLRKLCVGKEVTFRVDYTAP 397 +R FLRK +GK+V+ VDY P Sbjct: 401 AREFLRKKLIGKKVSVTVDYIRP 423
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 70.5 bits (171), Expect = 2e-12 Identities = 39/95 (41%), Positives = 54/95 (56%), Gaps = 9/95 (9%) Frame = +2 Query: 173 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGV---------DEPFAW 325 RG +K V SG +++ G + PPE+ I LS + A LARR DEP+A+ Sbjct: 21 RGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAF 80 Query: 326 ESRGFLRKLCVGKEVTFRVDYTAPNIGREFGTVYL 430 +R FLRK +GKEV F ++ P GRE+G +YL Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYL 114 Score = 38.9 bits (89), Expect = 0.005 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 10/83 (12%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 328 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 329 SRGFLRKLCVGKEVTFRVDYTAP 397 +R FLRK +GK+V VDY P Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424
>VG20_BPT4 (P13334) Structural protein of head (Tail tube protein Gp20)| Length = 524 Score = 31.6 bits (70), Expect = 0.83 Identities = 12/42 (28%), Positives = 25/42 (59%) Frame = -1 Query: 427 VDSAKFSPDVRSCVIHSECDLLSYAKFPQKPPAFPSKWLIDS 302 +D +KFSP +++ ++ D+L++ F +K +W +DS Sbjct: 113 LDKSKFSPKIKNMMLDEFSDVLNHLSFQRKGSDHFRRWYVDS 154
>HISX_BRAJA (P59397) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 431 Score = 29.6 bits (65), Expect = 3.2 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Frame = +2 Query: 110 LAAGQSQGAIMASNTGASGWLRGKVKAV----TSGDCLLIMGSTKAEIPPEKSITLSYLM 277 + AG S+ ++A +TG + W+ + A TS +LI S + EK++ Sbjct: 232 MIAGPSEVLVIADDTGNADWIAADLLAQAEHDTSAQSILITDSARLAADVEKAVEAQLKT 291 Query: 278 APRLA 292 PR A Sbjct: 292 LPRTA 296
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 28.9 bits (63), Expect = 5.4 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +2 Query: 113 AAG--QSQGAIMASNTGASGWLRGKVKAVTSGDCLLIMGS 226 AAG +S+GA + G RG K+ T+GDC GS Sbjct: 66 AAGGAESRGAALGGAADGEGPARGAAKSSTNGDCRRFRGS 105
>KAPR_USTMA (P49605) cAMP-dependent protein kinase regulatory subunit (PKA| regulatory subunit) Length = 522 Score = 28.5 bits (62), Expect = 7.1 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 4/76 (5%) Frame = -2 Query: 321 ANGSSTPPRRASLGAIRYDRVMDFSGG----ISALVLPMMRRQSPEVTAFTLPLSHPEAP 154 A G ++P +RASL D +GG +++L +PM QSP+ T + P AP Sbjct: 78 APGLASPTQRASL--FHSDPFAPGAGGGALPVASLAVPMDASQSPDSTPAPATPAAPAAP 135 Query: 153 VFDAMIAPWDWPAASG 106 A AP+ SG Sbjct: 136 A--APAAPFSSLGGSG 149
>CRTE_RHOCA (P17060) Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)| (GGPP synthetase) (Farnesyltranstransferase) Length = 289 Score = 28.1 bits (61), Expect = 9.2 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +2 Query: 188 AVTSGDCLLIMG----STKAEIPPEKSITLSYLMAPRLARRGGVDEPFAWES 331 AV +GD LLI G + + P++++ L + RGG+ AWES Sbjct: 106 AVLAGDSLLIRGFEVLADVGAVNPDRALKLISKLGQLSGARGGICAGQAWES 157
>GPR56_MACMU (Q50DM8) G-protein coupled receptor 56 precursor| Length = 687 Score = 28.1 bits (61), Expect = 9.2 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -1 Query: 415 KFSPDVRSCVIHSECDLLSYAKFPQKPPA 329 KF+PD+R + +SE L +A FP+ PA Sbjct: 49 KFTPDLRISIENSEEALTVHAPFPEAHPA 77 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,978,205 Number of Sequences: 219361 Number of extensions: 1314504 Number of successful extensions: 3564 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3476 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3557 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
