ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl25d12 |
|---|---|
| Clone Library Name | barley_pub |
>NCBP1_HUMAN (Q09161) Nuclear cap-binding protein subunit 1 (80 kDa nuclear| cap-binding protein) (NCBP 80 kDa subunit) (CBP80) Length = 790 Score = 45.1 bits (105), Expect = 8e-05 Identities = 27/104 (25%), Positives = 49/104 (47%) Frame = +1 Query: 133 TLLLRIGDRCPEYGGTADHKEHIEICYNVLSREYEHSKDDIFEFLLQCAEQLPHKIPFFG 312 +L+ ++G++ + ++E VL + + K I L A LP K+ + Sbjct: 33 SLICKVGEK-----SACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYT 87 Query: 313 VLIGLINLENEDFAMGIVDATQANLQDALHTENRDRIRILLRFL 444 L+GL+N N +F V+A L+++L N + L+RFL Sbjct: 88 TLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFL 131
>ZN484_HUMAN (Q5JVG2) Zinc finger protein 484| Length = 852 Score = 32.7 bits (73), Expect = 0.43 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Frame = -3 Query: 340 FLNLSNLSKLQRKESCEVIVRHTEGETQKYHLWSVHIHEKAHC--NRFRCAPCGRLFPR 170 F+ S+L + QR S E ++E E +++IH+K H F C CG+ F R Sbjct: 337 FIQKSDLFRCQRIHSGEKPYEYSECEKNLPQNSNLNIHKKIHTGGKHFECTECGKAFTR 395 Score = 28.5 bits (62), Expect = 8.1 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Frame = -3 Query: 343 HFLNLSNLSKLQRKESCEVIVRHTEGETQKYHLWSVHIHEKAHCNR--FRCAPCGRLF 176 HF+ + ++ C + + ++Q +H+H++ H +RCA CG+ F Sbjct: 594 HFITHERIHTGEKPYECSICGKSFTKKSQ------LHVHQQIHTGEKPYRCAECGKAF 645
>ITT1_YEAST (Q04638) Translation termination inhibitor protein ITT1| Length = 464 Score = 30.8 bits (68), Expect = 1.6 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = -3 Query: 319 SKLQRKESCEVIVRHTEGETQKYHLWSVHIHEKAHCNRFRCAPCGRLF 176 S LQR C+V+V +EG CN+ +C CG LF Sbjct: 397 SNLQRCPKCKVVVERSEG-----------------CNKMKCEVCGTLF 427
>BINCA_HUMAN (Q96LW7) Bcl10-interacting CARD protein (BinCARD)| Length = 228 Score = 30.4 bits (67), Expect = 2.1 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -1 Query: 186 VGCSPVLGAPVADAKQQRPPASAHG 112 V CSP L +P+A A QRPP+ G Sbjct: 135 VCCSPGLASPLASAPPQRPPSGPEG 159
>VGLH_BHV1C (P27599) Glycoprotein H precursor| Length = 842 Score = 29.6 bits (65), Expect = 3.6 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = -1 Query: 180 CSPVLGAPVADAKQQRPPASAHGGGGGQQRAERDA 76 C+ +L A V A PA+A GG GG+ R RDA Sbjct: 6 CAALLAAAVL-ALAAGAPAAARGGAGGRSREHRDA 39
>SHCBA_XENLA (Q6GPE9) SHC SH2 domain-binding protein 1 homolog A| Length = 699 Score = 29.6 bits (65), Expect = 3.6 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +1 Query: 169 YGGTADHKEHIEICYNVLSREYEHSKDDIFEFLLQCAE 282 Y TA EH+ Y + R ++ ++D F++ ++C E Sbjct: 189 YNQTALAIEHLRFFYQQIWRPWDEEEEDYFDYFVRCVE 226
>SHCBB_XENLA (Q640F2) SHC SH2 domain-binding protein 1 homolog B| Length = 698 Score = 29.6 bits (65), Expect = 3.6 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +1 Query: 169 YGGTADHKEHIEICYNVLSREYEHSKDDIFEFLLQCAE 282 Y TA EH+ Y + R ++ ++D F++ ++C E Sbjct: 189 YDQTALTIEHVRFFYQQIWRPWDEEEEDYFDYFVRCVE 226
>EP84_HCMVA (P17151) Early phosphoprotein p84| Length = 684 Score = 29.6 bits (65), Expect = 3.6 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = -1 Query: 159 PVADAKQQRPPAS--AHGGGGGQQRAERDAGCGQEAARIEGFGSGR 28 P+ +AK+Q+ A HGGGG + ++ G G G GSGR Sbjct: 256 PLREAKRQKTTAQHEGHGGGGKNETEQQSGGAGGGG----GGGSGR 297
>Y563_LISMF (Q723B6) UPF0210 protein LMOf2365_0563| Length = 451 Score = 29.6 bits (65), Expect = 3.6 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +1 Query: 217 VLSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAMGIVDATQA 381 V+ R E K + F+ + + +Q KI G L+G + E GIVD + A Sbjct: 222 VVKRAIEKVKGEPFDIVAETVKQTAFKITRMGQLVGQVASEKLGVPFGIVDLSLA 276
>Y538_LISIN (Q92EC2) UPF0210 protein lin0538| Length = 451 Score = 29.6 bits (65), Expect = 3.6 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +1 Query: 217 VLSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAMGIVDATQA 381 V+ R E K + F+ + + +Q KI G L+G + E GIVD + A Sbjct: 222 VVKRAIEKVKGEPFDIVAETVKQTAFKITRMGQLVGQVASEKLGVPFGIVDLSLA 276
>Y534_LISMO (Q8Y9J3) UPF0210 protein lmo0534| Length = 451 Score = 29.6 bits (65), Expect = 3.6 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +1 Query: 217 VLSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAMGIVDATQA 381 V+ R E K + F+ + + +Q KI G L+G + E GIVD + A Sbjct: 222 VVKRAIEKVKGEPFDIVAETVKQTAFKITRMGQLVGQVASEKLGVPFGIVDLSLA 276
>ODD1_CAEEL (P41995) Zinc finger protein odd-1| Length = 242 Score = 29.6 bits (65), Expect = 3.6 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Frame = -3 Query: 322 LSKLQRKES-CEVIVRHTEGETQKYHLWSVHIHEKAHCNR--FRCAPCGRLFPR 170 + K +KE C+ RH T+ Y+L IHE+ H N F C CG+ F R Sbjct: 120 IRKRPKKEFICKYCARHF---TKSYNLM---IHERTHTNERPFHCETCGKSFRR 167
>ZO3_CANFA (O62683) Tight junction protein ZO-3 (Zonula occludens 3 protein)| (Zona occludens 3 protein) (Tight junction protein 3) Length = 898 Score = 29.6 bits (65), Expect = 3.6 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Frame = -1 Query: 216 IVTDFDVLLVVGCSPVLGAPVADAKQQRPPASAHGGGG-GQQRAERDAGCGQEAARIEGF 40 + + F + ++ C+ + V ++ + PA+ G G G+Q E +A CGQ Sbjct: 69 VTSTFAIQILKTCTKLANITVKRPRKIQLPATKAGTSGRGRQGLEEEADCGQGYDGDTSS 128 Query: 39 GSGR 28 GSGR Sbjct: 129 GSGR 132
>RL40_AERPE (Q9YFY7) 50S ribosomal protein L40e| Length = 50 Score = 29.6 bits (65), Expect = 3.6 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = -3 Query: 238 VHIHEKAHCNRFRCAPCGRLFPRTRGTCRRCEA 140 V I EK N+ C CG L P + CRRC + Sbjct: 9 VAIFEKRVLNKKVCRRCGALNPMSATKCRRCRS 41
>OR7A_DROME (Q9W3I5) Putative odorant receptor 7a| Length = 413 Score = 29.3 bits (64), Expect = 4.7 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = +2 Query: 137 CCFASATGAPSTGEQPTTRSTSKSVTMCFLVNMNTPKMIFLSFSFSVPNNYL 292 C +A AP G +PTT ST + + CF V M +++ + F + Y+ Sbjct: 26 CFYALGMQAPD-GSRPTTSSTWQRIYACFSVVMYVWQLLLVPTFFVISYRYM 76
>NRX2A_RAT (Q63374) Neurexin-2-alpha precursor (Neurexin II-alpha)| Length = 1715 Score = 29.3 bits (64), Expect = 4.7 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = -1 Query: 132 PPASAHGGGGGQQRAERDAGCGQEAARIEGFGSG 31 PPA+ GG +AERD +E GF SG Sbjct: 1468 PPAARRPSSGGPCQAERDDSDCEEPVEASGFASG 1501
>PROD_CAEEL (O45228) Probable proline oxidase, mitochondrial precursor (EC| 1.5.3.-) (Proline dehydrogenase) Length = 616 Score = 29.3 bits (64), Expect = 4.7 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = +1 Query: 151 GDRCPEYGGT-ADHKEHIEICYNVLSREYEHSKD 249 GD Y T A+HK+ +E CYN L +E++K+ Sbjct: 33 GDTGKPYDCTSAEHKKELEECYNRLDLSFENTKE 66
>E2F5_HUMAN (Q15329) Transcription factor E2F5 (E2F-5)| Length = 346 Score = 29.3 bits (64), Expect = 4.7 Identities = 15/37 (40%), Positives = 16/37 (43%) Frame = -1 Query: 183 GCSPVLGAPVADAKQQRPPASAHGGGGGQQRAERDAG 73 G P P A A Q PP G GGG R E+ G Sbjct: 20 GQRPPPQPPQAQAPQPPPPPQLGGAGGGSSRHEKSLG 56
>ZBT17_MOUSE (Q60821) Zinc finger and BTB domain-containing protein 17 (Zinc| finger protein 151) (Zinc finger protein 100) (Zfp-100) (Polyomavirus late initiator promoter-binding protein) (LP-1) (Zinc finger protein Z13) Length = 794 Score = 29.3 bits (64), Expect = 4.7 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Frame = -3 Query: 259 QKYHLWSV-HIHEKAHCN--RFRCAPCGRLFPRTRGTCRRCEAAASSSQ 122 + Y L S+ ++H+K H R+RC CG+LF T G +R + S + Sbjct: 360 KSYRLISLLNLHKKRHSGEARYRCGDCGKLF-TTSGNLKRHQLVHSGQK 407
>NRX2B_RAT (Q63376) Neurexin-2-beta precursor (Neurexin II-beta)| Length = 662 Score = 29.3 bits (64), Expect = 4.7 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = -1 Query: 132 PPASAHGGGGGQQRAERDAGCGQEAARIEGFGSG 31 PPA+ GG +AERD +E GF SG Sbjct: 415 PPAARRPSSGGPCQAERDDSDCEEPVEASGFASG 448
>GCP60_MOUSE (Q8BMP6) Golgi resident protein GCP60 (Acyl-CoA-binding| domain-containing protein 3) (Golgi phosphoprotein 1) (GOLPH1) (Golgi complex-associated protein 1) (GOCAP1) (PBR- and PKA-associated protein 7) (Peripherial benzodiazepine receptor-asso Length = 524 Score = 28.9 bits (63), Expect = 6.2 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 11/48 (22%) Frame = -1 Query: 147 AKQQRPPASAHG-----GGGGQQRAERDA---GCGQEAARIE---GFG 37 A Q PP+SA G G GQQR +A G +EA R+E GFG Sbjct: 31 APPQTPPSSAPGNGLGSGASGQQREPGEAAAEGAAEEARRMEQHWGFG 78
>IF2_LEIXX (Q6AG49) Translation initiation factor IF-2| Length = 916 Score = 28.9 bits (63), Expect = 6.2 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 10/60 (16%) Frame = -1 Query: 177 SPVLGAPVADAKQ----------QRPPASAHGGGGGQQRAERDAGCGQEAARIEGFGSGR 28 SP +GAP Q Q+ P SA GG GG + AG G + G G GR Sbjct: 207 SPRIGAPRPGGGQRQGGGGRPGFQQRPGSAGGGAGGGLQRPGGAGAGGFSGPRTGGGGGR 266
>HME1_HUMAN (Q05925) Homeobox protein engrailed-1 (Hu-En-1)| Length = 392 Score = 28.9 bits (63), Expect = 6.2 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 5/29 (17%) Frame = -1 Query: 144 KQQRPP-----ASAHGGGGGQQRAERDAG 73 K+Q PP A+A GG GG R ERD G Sbjct: 119 KEQPPPQLLVAAAARGGAGGGGRVERDRG 147
>MSX1_BOVIN (O02786) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 28.9 bits (63), Expect = 6.2 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +3 Query: 6 SGAKPLRTDRNQNPRSEPPPARTRHLSLLSVVRHR 110 S KP RT QNPR PPP+R ++ +H+ Sbjct: 130 SPEKPERTPWMQNPRFSPPPSRRLSPPACTLRKHK 164
>ZBT17_HUMAN (Q13105) Zinc finger and BTB domain-containing protein 17 (Zinc| finger protein 151) (Myc-interacting zinc finger protein) (Miz-1 protein) Length = 803 Score = 28.9 bits (63), Expect = 6.2 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Frame = -3 Query: 259 QKYHLWSV-HIHEKAHCN--RFRCAPCGRLFPRTRGTCRRCEAAASSSQ 122 + Y L S+ ++H+K H R+RC CG+LF T G +R + S + Sbjct: 369 KSYRLISLLNLHKKRHSGEARYRCEDCGKLF-TTSGNLKRHQLVHSGEK 416
>BLAB_STRCI (P33652) Beta-lactamase regulatory protein blaB| Length = 312 Score = 28.5 bits (62), Expect = 8.1 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = +3 Query: 6 SGAKPLRTDRNQNPRSEPPPARTRHLSLLSVVRHRRHEHWLEDAA 140 +G +P RT R P P AR R L +++RHR + DAA Sbjct: 208 TGPRPGRTSRALPPE---PAARLRELMAANLLRHRLAPDFASDAA 249
>SRC64_DROME (P00528) Tyrosine-protein kinase Src64B (EC 2.7.10.2) (Dsrc64)| Length = 552 Score = 28.5 bits (62), Expect = 8.1 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +1 Query: 193 EHIEICYNVLSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVL 318 E+IE + + + D+I++ LLQC + +P K P F L Sbjct: 491 ENIERGFRMPKPTNHYFPDNIYQLLLQCWDAVPEKRPTFEFL 532
>HUTH2_FUSNN (Q8RDU4) Histidine ammonia-lyase 2 (EC 4.3.1.3) (Histidase 2)| Length = 511 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = +1 Query: 235 EHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAMGIVDATQANL 387 E KD I E E L +K+P +G+ G EN + ++ Q NL Sbjct: 31 EKQKDKILESRKYVEEALSNKMPIYGINTGFGKFENVPISEEELELLQKNL 81
>KDSA_XYLFT (Q87DY7) 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55)| (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS) Length = 276 Score = 28.5 bits (62), Expect = 8.1 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = -2 Query: 170 YSGHLSPMRSSSVLQPVLMAAVADNREQREMPGA-GRRRLGSRVLVPVGAQ 21 Y+ +S MRS +V++ V D ++PGA G R G R VPV A+ Sbjct: 169 YNNLVSDMRSLAVMRETGCPVVFDATHSVQLPGAQGGRSGGQREFVPVLAR 219
>KDSA_XYLFA (Q9PDU0) 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55)| (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS) Length = 276 Score = 28.5 bits (62), Expect = 8.1 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = -2 Query: 170 YSGHLSPMRSSSVLQPVLMAAVADNREQREMPGA-GRRRLGSRVLVPVGAQ 21 Y+ +S MRS +V++ V D ++PGA G R G R VPV A+ Sbjct: 169 YNNLVSDMRSLAVMRETGCPVVFDATHSVQLPGAQGGRSGGQREFVPVLAR 219
>HXC12_HUMAN (P31275) Homeobox protein Hox-C12 (Hox-3F)| Length = 282 Score = 28.5 bits (62), Expect = 8.1 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 2/38 (5%) Frame = -1 Query: 162 APVADAKQQRPPASAHGGGGGQQRAE--RDAGCGQEAA 55 A V D K A GGGGG +R E RD G G AA Sbjct: 86 ARVEDGKGYYREPCAEGGGGGLKREERGRDPGAGPGAA 123 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,256,079 Number of Sequences: 219361 Number of extensions: 1614514 Number of successful extensions: 7174 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 6419 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7128 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
