ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl25d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1B3A2_RABIT (P48746) Anion exchange protein 2 (Non-erythroid band... 33 0.36
2POLR_TYMVA (P20128) RNA replicase polyprotein (EC 2.7.7.48) 33 0.47
3APA_MYCAV (Q48919) Alanine and proline-rich secreted protein apa... 32 0.80
4VRP1_YEAST (P37370) Verprolin 32 0.80
5HRX_MOUSE (P55200) Zinc finger protein HRX (ALL-1) (Fragment) 32 1.0
6AEX3_CAEEL (O02626) Regulator of presynaptic activity aex-3 (Abo... 32 1.0
7B3A2_HUMAN (P04920) Anion exchange protein 2 (Non-erythroid band... 32 1.0
8TEGU_EBV (P03186) Large tegument protein 31 1.4
9RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein 30 3.1
10SYNJ1_RAT (Q62910) Synaptojanin-1 (EC 3.1.3.36) (Synaptic inosit... 30 3.1
11EP400_HUMAN (Q96L91) E1A-binding protein p400 (EC 3.6.1.-) (p400... 30 4.0
12TAF1C_HUMAN (Q15572) TATA box-binding protein-associated factor ... 30 4.0
13PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior... 30 4.0
14Y046_UREPA (Q9PR99) Hypothetical protein UU046 29 5.2
15Y044_UREPA (Q9PRA1) Hypothetical protein UU044 29 5.2
16SWR1_GIBZE (Q4IAK7) Helicase SWR1 (EC 3.6.1.-) 29 5.2
17TMPSD_MOUSE (Q5U405) Transmembrane protease, serine 13 (EC 3.4.2... 29 6.8
18SF3A1_MOUSE (Q8K4Z5) Splicing factor 3 subunit 1 (SF3a120) 29 6.8
19RUSC1_MOUSE (Q8BG26) RUN and SH3 domain-containing protein 1 29 6.8
20SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic inos... 29 6.8
21SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1... 29 6.8
22SMO_MOUSE (P56726) Smoothened homolog precursor (SMO) 29 6.8
23RCOR2_XENLA (Q6NRZ0) REST corepressor 2 29 6.8
24MSH5_YEAST (Q12175) MutS protein homolog 5 28 8.9
25H1_ASCIM (Q9UV33) Histone H1 28 8.9
26RDRP_PRV (Q3KSM3) RNA-directed RNA polymerase (EC 2.7.7.48) (RdR... 28 8.9
27MAP1A_HUMAN (P78559) Microtubule-associated protein 1A (MAP 1A) ... 28 8.9
28SMO_HUMAN (Q99835) Smoothened homolog precursor (SMO) (Gx protein) 28 8.9
29PEXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precu... 28 8.9

>B3A2_RABIT (P48746) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1237

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
 Frame = +3

Query: 171 TPRELGFTPFRSPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLVKSIH 350
           TP+  G  P R P     GA     EG+    E     G++A  +    STP S+   + 
Sbjct: 98  TPQGPGRKPRRRPGASPTGATPTIEEGEEDEEEANEAEGARAPTEPSPASTPSSVQFFLQ 157

Query: 351 AQLDAQIPVNADLSQRKPPAKATMLPKRDPPP--LEGA 458
               A+       ++R  P+  T+LP ++  P   EGA
Sbjct: 158 EDEGAE-----RKAERTSPSPPTLLPHQEAAPWATEGA 190



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>POLR_TYMVA (P20128) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1844

 Score = 32.7 bits (73), Expect = 0.47
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
 Frame = +3

Query: 162 LPVTPRELGFTPFRS--PPPQEEGALQNS--SEGKIQAPELKPLAGSQAVPKTEGVSTPI 329
           +P T   L FTP  S  PP   E +L  +  S    + P +    G+Q    T    TPI
Sbjct: 567 IPRTTAFLPFTPTTSTAPPDHSEASLPPAFASTSVPRPPPVASSLGAQPPTTTAAPPTPI 626

Query: 330 SLVKSIHAQLDAQIPVNADLSQRKPPAKATMLPKRDP 440
              +  H   D  +  +  +    PP +++ +P   P
Sbjct: 627 EPTQRAHQNSDLTLESSTPIEPPPPPIQSSDIPPSAP 663



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>APA_MYCAV (Q48919) Alanine and proline-rich secreted protein apa precursor|
           (45/47 kDa antigen) (Fibronectin attachment protein)
           (FAP-A)
          Length = 381

 Score = 32.0 bits (71), Expect = 0.80
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +3

Query: 363 AQIPVNADLSQRKPPAKATMLPKRDPPPLEGALPN 467
           A  P  A   Q++PP +  M+P R PPP  GA PN
Sbjct: 72  AGAPAPAPNGQQRPPRRRRMIPTRAPPP-AGAPPN 105



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>VRP1_YEAST (P37370) Verprolin|
          Length = 817

 Score = 32.0 bits (71), Expect = 0.80
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
 Frame = +3

Query: 207 PPPQEEGALQNSSEGKIQAPELKP-----LAGSQAVPKTEGVSTPI---------SLVKS 344
           PPP    A+ ++S   ++A  + P     L  + +VP  +  S P              +
Sbjct: 352 PPPPLPAAMSSASTNSVKATPVPPTLAPPLPNTTSVPPNKASSMPAPPPPPPPPPGAFST 411

Query: 345 IHAQLDAQIPVNADLSQRKPPAKATMLPKRDPPP 446
             A   + IP+ A L    PP+ AT +P   PPP
Sbjct: 412 SSALSASSIPL-APLPPPPPPSVATSVPSAPPPP 444



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>HRX_MOUSE (P55200) Zinc finger protein HRX (ALL-1) (Fragment)|
          Length = 3866

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 14/97 (14%)
 Frame = +3

Query: 204  SPPPQEEGALQNSSEGKIQAPELKPL------AGSQA---VPKTEGVSTPIS-----LVK 341
            +PPP+EE A + SS    + P  KP+       G+ A    P+ + VS P S      V 
Sbjct: 1142 APPPREEPAPKKSSS---EPPPRKPVEEKSEEGGAPAPAPAPEPKQVSAPASRKSSKQVS 1198

Query: 342  SIHAQLDAQIPVNADLSQRKPPAKATMLPKRDPPPLE 452
               A +  Q P  A   +  P A  +   K+ PPP E
Sbjct: 1199 QPAAVVPPQPPSTAPQKKEAPKAVPSEPKKKQPPPPE 1235



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>AEX3_CAEEL (O02626) Regulator of presynaptic activity aex-3 (Aboc, expulsion|
            defective protein 3)
          Length = 1409

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 35/98 (35%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
 Frame = +3

Query: 165  PVTPRELGFTPFRSPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLVKS 344
            PV PRE    P R+PPP   GA     EG    P L P      V  T    TP +LV +
Sbjct: 967  PVPPREAPPIPKRNPPPL--GAPPKVPEGARAPPPLPP---RPKVKTTAVDETPQNLVPN 1021

Query: 345  IHAQLDAQIPVNADL-SQRKP---PAKATMLP--KRDP 440
                  +     AD   Q KP   PA  T LP  K++P
Sbjct: 1022 NQPAQPSSPSFLADADEQTKPLLKPAPPTTLPVGKQEP 1059



 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +3

Query: 402  PPAKATMLPKRDPPPLEGALP 464
            PP +A  +PKR+PPPL GA P
Sbjct: 969  PPREAPPIPKRNPPPL-GAPP 988



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>B3A2_HUMAN (P04920) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (BND3L)
          Length = 1241

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
 Frame = +3

Query: 171 TPRELGFTPFRSPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLVKSIH 350
           TP+  G  P R P     G      EG+    E     G++A+ +   VSTP S+     
Sbjct: 98  TPQGPGRKPRRRPGASPTGETPTIEEGEEDEDEASEAEGARALTQPSPVSTPSSV----- 152

Query: 351 AQLDAQIPVNAD-LSQRKPPAKATMLPKRDPPP 446
            Q   Q   +AD  ++R  P+    LP ++  P
Sbjct: 153 -QFFLQEDDSADRKAERTSPSSPAPLPHQEATP 184



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>TEGU_EBV (P03186) Large tegument protein|
          Length = 3149

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
 Frame = +3

Query: 195 PFRSPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLVKSIHAQLDAQIP 374
           P + P P  + A  N    KI      P   + A P T  +S P +  +   +   A  P
Sbjct: 499 PLQIPIPLPQAAPSNP---KIPLTTPSPSPTAAAAPTTTTLSPPPTQQQPPQSAAPAPSP 555

Query: 375 VNADLSQRKP-----PAKATMLPKRDPPPLEGALPN 467
           +   L Q++P     PA + +LP++ PPP     P+
Sbjct: 556 L---LPQQQPTPSAAPAPSPLLPQQQPPPSAARAPS 588



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>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein|
          Length = 2480

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 12/50 (24%)
 Frame = +3

Query: 213  PQEEGALQNSSEGKIQAPELK------------PLAGSQAVPKTEGVSTP 326
            P+ EG  Q  SEG I+APE +            P A  +A P+ EGV TP
Sbjct: 2263 PEAEGEAQPESEG-IEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETP 2311



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>SYNJ1_RAT (Q62910) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1574

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 32/100 (32%), Positives = 44/100 (44%)
 Frame = +3

Query: 165  PVTPRELGFTPFRSPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLVKS 344
            P +   LG +P  SP        Q+ +  +  AP L P+  S+A  +T G   P+S   S
Sbjct: 1032 PSSSSGLGTSPSSSP---RTSPCQSPTAPEYSAPSL-PIRPSRAPSRTPG---PLS---S 1081

Query: 345  IHAQLDAQIPVNADLSQRKPPAKATMLPKRDPPPLEGALP 464
              A +D Q     + SQ       T+ PKR PPP   A P
Sbjct: 1082 QGAPVDTQPAAQKESSQ-------TIEPKRPPPPRPVAPP 1114



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>EP400_HUMAN (Q96L91) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa|
            SWI2/SNF2-related protein) (Domino homolog) (hDomino)
            (CAG repeat protein 32) (Trinucleotide repeat-containing
            gene 12 protein)
          Length = 3160

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 20/83 (24%), Positives = 35/83 (42%)
 Frame = +3

Query: 216  QEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLVKSIHAQLDAQIPVNADLSQ 395
            Q++   Q ++  ++Q P+++  A S A  K  G  TP  L+K    +L          +Q
Sbjct: 2779 QQQQQQQTTTTSQVQVPQIQGQAQSPAQIKAVGKLTPEHLIKMQKQKLQMPPQPPPPQAQ 2838

Query: 396  RKPPAKATMLPKRDPPPLEGALP 464
              PP  A  +  +   P +   P
Sbjct: 2839 SAPPQPAAQVQVQTSQPPQQQSP 2861



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>TAF1C_HUMAN (Q15572) TATA box-binding protein-associated factor RNA polymerase I|
            subunit C (TATA box-binding protein-associated factor 1C)
            (TBP-associated factor 1C) (TBP-associated factor RNA
            polymerase I 110 kDa) (TAFI110)
          Length = 869

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 11/112 (9%)
 Frame = +3

Query: 150  LARRLPVTPRELGFTPFRSPPPQEEGALQNSSEGKI-------QAPELKPLAGSQAVP-- 302
            +AR   +  R+LG  P   PPP  E  L++    ++        A   +   G  + P  
Sbjct: 686  MARGQLLLQRDLGSLPAAEPPPAPESGLEDKLSERLGEAWAGRGAAWWERQQGRTSEPGR 745

Query: 303  --KTEGVSTPISLVKSIHAQLDAQIPVNADLSQRKPPAKATMLPKRDPPPLE 452
              +     T +S   S+   +D     ++  S   PPA A  LP   PP  E
Sbjct: 746  QTRRPKRRTQLSSSFSLSGHVDPSEDTSSPHSPEWPPADALPLPPTTPPSQE 797



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>PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior sex combs)|
          Length = 1601

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
 Frame = +3

Query: 147  DLARRLPVTPRELGFTPFRSP------PPQEEGALQNSSEGKIQAPELKPLAGSQAVPKT 308
            +LA +LP     +GF P ++P      PP ++    N+     Q+ + K + G Q+ P  
Sbjct: 1311 ELAPKLPTLAPFVGFNPLQNPAAGKKVPPSKKS--PNAGAAAHQSGQQKLVNGGQSQPAQ 1368

Query: 309  EGVSTPISLVKSIHAQLDAQIPVNADLSQRKPPAKATMLPKRDPPPL 449
            +  S P        AQ + Q       +   PP     + K  P P+
Sbjct: 1369 QKTSPP--------AQKNQQQVKKVSKNPTPPPPSLPAVGKMMPHPV 1407



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>Y046_UREPA (Q9PR99) Hypothetical protein UU046|
          Length = 791

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 24/91 (26%), Positives = 36/91 (39%)
 Frame = +3

Query: 195 PFRSPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLVKSIHAQLDAQIP 374
           P  +PP +EE         + + PE+KP    +  PK + +  P   V++         P
Sbjct: 93  PIPTPPKKEELKKPEIKPEEPKKPEIKPEPIPK--PKPQPIPQPTPPVETK--------P 142

Query: 375 VNADLSQRKPPAKATMLPKRDPPPLEGALPN 467
               L    PP K    P+ DP P    +PN
Sbjct: 143 KEELLPPSPPPPKEEPKPEPDPQPQPQQIPN 173



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>Y044_UREPA (Q9PRA1) Hypothetical protein UU044|
          Length = 782

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 23/91 (25%), Positives = 36/91 (39%)
 Frame = +3

Query: 195 PFRSPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLVKSIHAQLDAQIP 374
           P  +PP +EE    +    + + PE+KP       PK E +  P   +++         P
Sbjct: 93  PIPTPPKKEELKKPDIKPEEPKKPEIKP------EPKPEPIPQPAPPIET--------KP 138

Query: 375 VNADLSQRKPPAKATMLPKRDPPPLEGALPN 467
               L    PP K    P+ +P P    +PN
Sbjct: 139 KEELLPPNPPPPKEEPKPEPNPQPQPQQVPN 169



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>SWR1_GIBZE (Q4IAK7) Helicase SWR1 (EC 3.6.1.-)|
          Length = 1691

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
 Frame = +3

Query: 180 ELGFTPFRSPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLVKSIHAQL 359
           E+       P P E GAL+ S++  ++  E  P A        +G+S   + V+   +Q 
Sbjct: 662 EMSLIQMPDPEPHESGALEKSTKEAVEEKEQIPAAMQDVAAGQDGLSNTDNNVQEPASQ- 720

Query: 360 DAQIPVNAD-------LSQRKPPAKATMLPKRDPP 443
           D  + +  +       L+  KP + AT  P  +PP
Sbjct: 721 DNDVAMTGNDPEEPSALTFEKPHSPATE-PATNPP 754



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>TMPSD_MOUSE (Q5U405) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic|
           serine protease) (Membrane-type mosaic serine protease)
          Length = 543

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 17/76 (22%), Positives = 36/76 (47%)
 Frame = +3

Query: 192 TPFRSPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLVKSIHAQLDAQI 371
           +P R+PPPQ   A  + +    +AP  +  +G  +  ++   ++  + V  + A     +
Sbjct: 51  SPARAPPPQASPARASPA----RAPPSRSSSGRSSSARSASTTSSPTRVYLVRATPVGAV 106

Query: 372 PVNADLSQRKPPAKAT 419
           P+ A  ++  P  +AT
Sbjct: 107 PIRASPARSAPATRAT 122



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>SF3A1_MOUSE (Q8K4Z5) Splicing factor 3 subunit 1 (SF3a120)|
          Length = 791

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 27/102 (26%), Positives = 37/102 (36%)
 Frame = +3

Query: 162 LPVTPRELGFTPFRSPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLVK 341
           +PV PR    +  R PP    G++       I AP +  +    A P       P  +V 
Sbjct: 592 VPVMPRPPMASVVRLPP----GSVIAPMPPIIHAPRINVVPMPPAAPPIMAPRPPPMIVP 647

Query: 342 SIHAQLDAQIPVNADLSQRKPPAKATMLPKRDPPPLEGALPN 467
           +         PV         PA A M P   PPP+E   P+
Sbjct: 648 TAFVPAPPVAPV---------PAPAPMPPVHPPPPMEDEPPS 680



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>RUSC1_MOUSE (Q8BG26) RUN and SH3 domain-containing protein 1|
          Length = 893

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +3

Query: 258 QAPELKPLAGSQAVPKTEGVSTPISLVKSIHAQLDAQIPVNADLSQRKPPAKATMLPKRD 437
           + P    L GS A P+       ++  K + ++  AQ P    +  R PPA   ++P R 
Sbjct: 343 ELPPTGSLGGSLAPPRE------VTTFKELRSRSRAQPP---PVPPRDPPAGWALVPPRP 393

Query: 438 PPP 446
           PPP
Sbjct: 394 PPP 396



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>SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1574

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 30/100 (30%), Positives = 42/100 (42%)
 Frame = +3

Query: 165  PVTPRELGFTPFRSPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLVKS 344
            P +   LG +P  SP        Q+ +  +  AP L P+  S+A  +T G  +      S
Sbjct: 1032 PSSSSGLGTSPSSSP---RTSPCQSPTVPEYSAPSL-PIRPSRAPSRTPGPPS------S 1081

Query: 345  IHAQLDAQIPVNADLSQRKPPAKATMLPKRDPPPLEGALP 464
              + +D Q     D SQ       T+ PKR PPP   A P
Sbjct: 1082 QGSPVDTQPAAQKDSSQ-------TLEPKRPPPPRPVAPP 1114



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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 22/104 (21%), Positives = 38/104 (36%)
 Frame = +3

Query: 156 RRLPVTPRELGFTPFRSPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISL 335
           +R   +PR        SPPP   GA  +    +  +P  +P+      P+      P  +
Sbjct: 680 KRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPE------PKKI 733

Query: 336 VKSIHAQLDAQIPVNADLSQRKPPAKATMLPKRDPPPLEGALPN 467
            K+      +   V++  S    P  A   P   P P++   P+
Sbjct: 734 KKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPS 777



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>SMO_MOUSE (P56726) Smoothened homolog precursor (SMO)|
          Length = 793

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +3

Query: 150 LARRLPVTPRELGFTPFRSPPPQEEGALQNSSEGKIQAPELKPLAG 287
           +ARR  + P+++  TP  +P P EE A     E +I +PEL+   G
Sbjct: 630 VARRGAILPQDVSVTPVATPVPPEEQANMWLVEAEI-SPELEKRLG 674



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>RCOR2_XENLA (Q6NRZ0) REST corepressor 2|
          Length = 503

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
 Frame = +3

Query: 204 SPPPQEEGALQNSSEGKIQAPELKP--------LAGSQAVPKTEGVSTPISLVKSIHAQL 359
           SPPP     + N + G  Q P  +          + SQ  P     +  +SL   +   L
Sbjct: 393 SPPPASTD-MSNKTSGSSQTPNEEDDEVQITSVSSSSQPAPPAAAAAASLSLPPPL---L 448

Query: 360 DAQIPVNADLSQRKPPAKATMLPKRDPPPLEGALP 464
              IP    L ++ PP +   L +  PPPL    P
Sbjct: 449 RPAIPCAPTLHRQPPPLQPGRLLQPRPPPLVRPAP 483



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>MSH5_YEAST (Q12175) MutS protein homolog 5|
          Length = 901

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -1

Query: 326 RCADALGFWNSLRSGK 279
           RC DA GF N LRSGK
Sbjct: 337 RCPDAFGFINQLRSGK 352



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>H1_ASCIM (Q9UV33) Histone H1|
          Length = 213

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
 Frame = +3

Query: 210 PPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLVKSIHAQLDAQIPVNA-- 383
           P    G ++ + + K  A   KP A   A PK +      +  K   A   A        
Sbjct: 86  PKGPSGTVKLAKKEKAAAAPKKPAAKKAAAPKKDAAPKKAAAPKKAAAPKSAAAKKKLLD 145

Query: 384 --DLSQRKPPAKATMLPKRDPPPLEGALP 464
               + +KP AK    PK+   P+E   P
Sbjct: 146 AKKAAAKKPAAKKAAAPKKVAAPVEKPAP 174



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>RDRP_PRV (Q3KSM3) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA|
            replicase)
          Length = 1014

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
 Frame = +3

Query: 210  PPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLVKSIH-----AQLDAQIP 374
            P ++E A++ +    ++  E + +A ++AV K   +     +  + +     A++D Q+ 
Sbjct: 852  PQKDEAAIRAAMAAVLEVDEAQLIAQNEAVLKVNSLDQFPVVFDTYYDHKQLAEVDGQL- 910

Query: 375  VNADL-----SQRKPPAKATMLPKRDPPPLEG 455
            V  DL      +R+P      +P   PPP  G
Sbjct: 911  VGTDLHIKEEDERQPETSIDSVPSTGPPPSNG 942



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>MAP1A_HUMAN (P78559) Microtubule-associated protein 1A (MAP 1A)|
            (Proliferation-related protein p80) [Contains: MAP1 light
            chain LC2]
          Length = 2805

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
 Frame = +3

Query: 210  PPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLVKSI-HAQLD-------A 365
            PP+EE  L  S    I  P   P    Q VP   G  +PI   K + H + +       A
Sbjct: 1781 PPEEEDKLTRSPFEIISPPASPPEMVGQRVPSAPGQESPIPDPKLMPHMKNEPTTPSWLA 1840

Query: 366  QIPVNADLSQRKPPAKATMLPKRDPPPLEGALP 464
             IP      +  PPA  +  P    P  E   P
Sbjct: 1841 DIPPWVPKDRPLPPAPLSPAPGPPTPAPESHTP 1873



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>SMO_HUMAN (Q99835) Smoothened homolog precursor (SMO) (Gx protein)|
          Length = 787

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +3

Query: 150 LARRLPVTPRELGFTPFRSPPPQEEGALQNSSEGKIQAPELKPLAG 287
           +ARR  + P+++  TP  +P P EE A     E +I +PEL+   G
Sbjct: 626 VARRGAILPQDISVTPVATPVPPEEQANLWLVEAEI-SPELQKRLG 670



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>PEXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precursor (PELP)|
          Length = 426

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
 Frame = +3

Query: 192 TPFRSPPPQEEGALQNSSEGKIQAPELKPLAGSQA-----VPKTEGVSTPISLVKSIHAQ 356
           +P + PPP        S     Q P  +P    +A     +P    V+ P  +  S    
Sbjct: 192 SPAKQPPPPPPPVKAPSPSPATQPPTKQPPPPPRAKKSPLLPPPPPVAYPPVMTPSPSPA 251

Query: 357 LDAQIPVNADLSQRKPPAKATMLPKRDPPPLEGALP 464
             A+ P+ A      PPA   ++P+R  PP+   LP
Sbjct: 252 --AEPPIIAPFPS--PPANPPLIPRRPAPPVVKPLP 283


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,838,521
Number of Sequences: 219361
Number of extensions: 1108305
Number of successful extensions: 3997
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 3733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3988
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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