ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl25d07 |
|---|---|
| Clone Library Name | barley_pub |
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 143 bits (360), Expect = 2e-34 Identities = 72/115 (62%), Positives = 87/115 (75%), Gaps = 1/115 (0%) Frame = +3 Query: 105 MSGGFFRGTSADQDTRFSNKHAKLLKTQKFASELDHQVDMSKVKMDVMKPWIATRVTELL 284 M GFFRGTSA+QD RFSNK KLLK KFA L+ +VDMSKV ++V+KPWI RVTE+L Sbjct: 1 MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL 60 Query: 285 GFEDEVLINFIYGLLDAKEVDGKYIQIQLTGFME-KNTIKFMRELWSLLLSAQQN 446 GFED+V+I FI+ L+ K D K +QI LTGF+ KN +FM ELW LLLSAQ+N Sbjct: 61 GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQEN 115
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 143 bits (360), Expect = 2e-34 Identities = 72/115 (62%), Positives = 87/115 (75%), Gaps = 1/115 (0%) Frame = +3 Query: 105 MSGGFFRGTSADQDTRFSNKHAKLLKTQKFASELDHQVDMSKVKMDVMKPWIATRVTELL 284 M GFFRGTSA+QD RFSNK KLLK KFA L+ +VDMSKV ++V+KPWI RVTE+L Sbjct: 1 MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL 60 Query: 285 GFEDEVLINFIYGLLDAKEVDGKYIQIQLTGFME-KNTIKFMRELWSLLLSAQQN 446 GFED+V+I FI+ L+ K D K +QI LTGF+ KN +FM ELW LLLSAQ+N Sbjct: 61 GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQEN 115
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 143 bits (360), Expect = 2e-34 Identities = 72/115 (62%), Positives = 87/115 (75%), Gaps = 1/115 (0%) Frame = +3 Query: 105 MSGGFFRGTSADQDTRFSNKHAKLLKTQKFASELDHQVDMSKVKMDVMKPWIATRVTELL 284 M GFFRGTSA+QD RFSNK KLLK KFA L+ +VDMSKV ++V+KPWI RVTE+L Sbjct: 1 MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL 60 Query: 285 GFEDEVLINFIYGLLDAKEVDGKYIQIQLTGFME-KNTIKFMRELWSLLLSAQQN 446 GFED+V+I FI+ L+ K D K +QI LTGF+ KN +FM ELW LLLSAQ+N Sbjct: 61 GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQEN 115
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 143 bits (360), Expect = 2e-34 Identities = 72/115 (62%), Positives = 87/115 (75%), Gaps = 1/115 (0%) Frame = +3 Query: 105 MSGGFFRGTSADQDTRFSNKHAKLLKTQKFASELDHQVDMSKVKMDVMKPWIATRVTELL 284 M GFFRGTSA+QD RFSNK KLLK KFA L+ +VDMSKV ++V+KPWI RVTE+L Sbjct: 1 MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL 60 Query: 285 GFEDEVLINFIYGLLDAKEVDGKYIQIQLTGFME-KNTIKFMRELWSLLLSAQQN 446 GFED+V+I FI+ L+ K D K +QI LTGF+ KN +FM ELW LLLSAQ+N Sbjct: 61 GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQEN 115
>PRPF3_MOUSE (Q922U1) U4/U6 small nuclear ribonucleoprotein Prp3| (Pre-mRNA-splicing factor 3) Length = 683 Score = 38.1 bits (87), Expect = 0.010 Identities = 19/66 (28%), Positives = 37/66 (56%) Frame = +3 Query: 222 MSKVKMDVMKPWIATRVTELLGFEDEVLINFIYGLLDAKEVDGKYIQIQLTGFMEKNTIK 401 +SK ++D +KPWI V +LGF + ++ + K +D K L F++ +T++ Sbjct: 3 LSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCV-GKGMDKKKAADHLKPFLDDSTLR 61 Query: 402 FMRELW 419 F+ +L+ Sbjct: 62 FVDKLF 67
>PRPF3_HUMAN (O43395) U4/U6 small nuclear ribonucleoprotein Prp3| (Pre-mRNA-splicing factor 3) (U4/U6 snRNP 90 kDa protein) (hPrp3) Length = 683 Score = 38.1 bits (87), Expect = 0.010 Identities = 19/66 (28%), Positives = 37/66 (56%) Frame = +3 Query: 222 MSKVKMDVMKPWIATRVTELLGFEDEVLINFIYGLLDAKEVDGKYIQIQLTGFMEKNTIK 401 +SK ++D +KPWI V +LGF + ++ + K +D K L F++ +T++ Sbjct: 3 LSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCV-GKGMDKKKAADHLKPFLDDSTLR 61 Query: 402 FMRELW 419 F+ +L+ Sbjct: 62 FVDKLF 67
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 31.2 bits (69), Expect = 1.2 Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 3/111 (2%) Frame = -2 Query: 417 TAPS*TLLYSSP*TPSAGSVCTSRPPPSHRAGRR*S**ALRPRTQEAQ*PVWQSTA---S 247 T P+ T TPS T+ PPP+ P T P+ +T + Sbjct: 1627 TPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSP--------PTTTTPSPPITTTTTPPPT 1678 Query: 246 SRPSSPLTCPPDGQAQTRTSVSSATWHACWRIWYPGRPTSPGRSLLTSSQT 94 + PSSP+T P T T+ S T P+SP + T S T Sbjct: 1679 TTPSSPITTTPSPPTTTMTTPSPTT-----------TPSSPITTTTTPSST 1718
>RPOB_DESPS (Q6AP78) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1360 Score = 30.0 bits (66), Expect = 2.7 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = +3 Query: 219 DMSKVKMDVMKPWIATRVTELLGFEDEVLINFIYGLLDAKEVDGKY 356 D+ V++D + + T + + LG+ E L+ Y L + K DGKY Sbjct: 191 DVLHVRIDRRRKFPVTTLLKALGYSSEELLREFYPLENVKLSDGKY 236
>MFS14_MAIZE (Q01900) MFS14 protein precursor| Length = 126 Score = 29.6 bits (65), Expect = 3.5 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = -2 Query: 291 RTQEAQ*PVWQSTASSRPSSPLTCPPDGQAQTRTS-VSSATWHACWRIWYPGR 136 RT A V S ++ +S CP + T+ + + TWHAC W GR Sbjct: 65 RTAAALSAVCTSAPAAPWASSTACPAGATSPKPTAPLEAGTWHACCNGWQEGR 117
>DNAJ_GLUOX (Q5FSL4) Chaperone protein dnaJ| Length = 380 Score = 29.6 bits (65), Expect = 3.5 Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Frame = +2 Query: 173 VAEDTEVRV*A*PSGGHVKGE-DGRDEAVDCHTGH*ASWVRGRSAYQLHLRPA-RCEGGG 346 V +D EVR H G D + + C T H A VR + + L RP C G G Sbjct: 137 VTKDVEVRTRVTCEACHGSGSADPKAGSSTCPTCHGAGKVRAQQGFFLVERPCPTCHGSG 196 Query: 347 REVHTDPADGVHG 385 R V +P HG Sbjct: 197 RTV-ANPCKVCHG 208
>ARAC_ERWCH (P07642) Arabinose operon regulatory protein| Length = 310 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/58 (31%), Positives = 29/58 (50%) Frame = -3 Query: 446 ILLRT*KEAPQLPHELYCILLHEPRQLDLYVLPVHLLRIEQAVDEVDKHFVLEPKKLS 273 +LLR +E PQ P ++ +PR ++ L E +DEV +H L P +L+ Sbjct: 165 LLLRAMEEDPQSPQKIM-----DPRVIEACQFITSNLAGELRIDEVARHVCLSPSRLA 217
>PGM2L_MOUSE (Q8CAA7) Phosphoglucomutase-2-like 1 (EC 5.4.2.2)| Length = 621 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 8/62 (12%) Frame = +3 Query: 255 WIATRVTELLGFEDEVL------INFIYG--LLDAKEVDGKYIQIQLTGFMEKNTIKFMR 410 WI +R+ +LLG EVL I F+ G +LD V + ++ F++ + M Sbjct: 413 WIGSRIKDLLGNGKEVLFAFEESIGFLCGTSVLDKDGVSAAAVVAEMASFLDTRKVTLME 472 Query: 411 EL 416 +L Sbjct: 473 QL 474
>MAST3_HUMAN (O60307) Microtubule-associated serine/threonine-protein kinase 3 (EC| 2.7.11.1) Length = 1309 Score = 29.3 bits (64), Expect = 4.6 Identities = 29/102 (28%), Positives = 41/102 (40%) Frame = -2 Query: 420 STAPS*TLLYSSP*TPSAGSVCTSRPPPSHRAGRR*S**ALRPRTQEAQ*PVWQSTASSR 241 ++ PS + SSP +P+A +RP H + RP+T + + SS Sbjct: 1135 ASPPSASPSSSSPASPAAAG--HTRPSSLHGLAAKLG--PPRPKTGR------RKSTSSI 1184 Query: 240 PSSPLTCPPDGQAQTRTSVSSATWHACWRIWYPGRPTSPGRS 115 P SPL CPP R+ PG P +P RS Sbjct: 1185 PPSPLACPPISAPPPRSPSP-----------LPGHPPAPARS 1215
>DOT1L_DROME (Q8INR6) Histone-lysine N-methyltransferase, H3 lysine-79 specific| (EC 2.1.1.43) (Histone H3-K79 methyltransferase) (H3-K79-HMTase) (Protein grappa) (DOT1-like protein) (dDOT1L) Length = 1848 Score = 29.3 bits (64), Expect = 4.6 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 1/98 (1%) Frame = +3 Query: 150 RFSNKHAKLLKTQKFASELDHQVDMSKVKMDVMKPWIATRVTELLGFEDEVLINFIYGLL 329 + + + ++ + + AS+LD Q+ KV +D + R+ EL + +N L+ Sbjct: 688 QIAQEQERMARLKNRASQLDKQI---KVLIDDSVALLKVRMNEL-----GIHVNSPNDLI 739 Query: 330 -DAKEVDGKYIQIQLTGFMEKNTIKFMRELWSLLLSAQ 440 AKE+ G++ +Q T +N + F LLL+ Q Sbjct: 740 AQAKEIVGRHKDLQHTASRMRNEVTFYEGEQKLLLNKQ 777
>HIF1A_XENLA (Q9I8A9) Hypoxia-inducible factor 1 alpha (HIF-1 alpha) (HIF1| alpha) Length = 805 Score = 28.9 bits (63), Expect = 6.0 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = +3 Query: 204 LDHQVDMSKVKMDVMKPWIATRVTELLGFE-DEVLINFIYGLLDAKEVD 347 LD + +S+ +D+ + RVTEL+G+E DE+L +Y A + D Sbjct: 238 LDSKTFLSRHSLDMKFSYCDERVTELVGYEPDELLGRSVYEYYHALDSD 286
>CSF3R_HUMAN (Q99062) Granulocyte colony-stimulating factor receptor precursor| (G-CSF-R) (CD114 antigen) Length = 836 Score = 28.9 bits (63), Expect = 6.0 Identities = 17/60 (28%), Positives = 23/60 (38%) Frame = -2 Query: 300 LRPRTQEAQ*PVWQSTASSRPSSPLTCPPDGQAQTRTSVSSATWHACWRIWYPGRPTSPG 121 L QE + S +SRP+ + G A TR + H+ W W P P G Sbjct: 399 LPSEAQEVALVAYNSAGTSRPTPVVFSESRGPALTRLHAMARDPHSLWVGWEPPNPWPQG 458
>I13R1_MOUSE (O09030) Interleukin-13 receptor alpha-1 chain precursor| (IL-13R-alpha-1) (IL-13RA-1) (Interleukin-13-binding protein) (NR4) (CD213a1 antigen) Length = 424 Score = 28.5 bits (62), Expect = 7.9 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 7/52 (13%) Frame = -2 Query: 258 STASSRPSSPLT----CPPDGQAQTRTSVSSATWHACWRI---WYPGRPTSP 124 S S SPL PP+G ++ + WH + W PGR TSP Sbjct: 101 SANESEKPSPLVKKCISPPEGDPESAVTELKCIWHNLSYMKCSWLPGRNTSP 152 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,454,150 Number of Sequences: 219361 Number of extensions: 1367964 Number of successful extensions: 4114 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3959 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4103 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
