>KIF12_HUMAN (Q96FN5) Kinesin-like protein KIF12|
          Length = 646

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 56  LSRIPISHAAVLTA---VDEVGGPEAIGGRAKPA*PNHKG*GCGPGAS 190
           L R+P++H A L     + +V  PEA GGR   A P      C PG++
Sbjct: 508 LCRVPLAHWACLPGEHHLPQVLDPEASGGRPPSARPPPWAPPCSPGSA 555

>IL3RB_HUMAN (P32927) Cytokine receptor common beta chain precursor|
           (GM-CSF/IL-3/IL-5 receptor common beta-chain) (CD131
           antigen) (CDw131)
          Length = 897

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 1   GPDHLLSSSHRAARANTQLVPNSDL 75
           GP+HL+ SS   AR  T+L P S L
Sbjct: 198 GPEHLMPSSTYVARVRTRLAPGSRL 222

>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)|
          Length = 1518

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 20  LPLTVPRGPTPNLSRIPISHAAVLTAVDEVGGPEAIG 130
           LP+++P   T   S + +S AAV+ AV E GG  A G
Sbjct: 84  LPMSLPLPLTAASSAVTVSLAAVVAAVAETGGAGAGG 120

>DCDA_SYNY3 (Q55484) Diaminopimelate decarboxylase (EC 4.1.1.20) (DAP|
           decarboxylase)
          Length = 469

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = +2

Query: 8   TTFSLPLTVPRGPTPNLSRIPISHAAVLTAVDEVGGPEAIGGRAKPA 148
           TT S  L  P  P+PN + +P      LTAV    G   IGG + PA
Sbjct: 10  TTGSTLLKTPASPSPNQNLLP------LTAVINKNGELEIGGCSVPA 50

>REV_HV1A2 (P04623) REV protein (Anti-repression transactivator protein)|
           (ART/TRS)
          Length = 116

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 245 PPSPIGASRPRHCRPSRAPTRPDRNPSLCGWVKQVWRARRWPPV 114
           PPSP G  + R  R  R   R  +  S+ GW+   +  R   PV
Sbjct: 28  PPSPEGTRQARRNRRRRWRERQRQIRSISGWILSTYLGRSAEPV 71

>ZN324_HUMAN (O75467) Zinc finger protein 324 (Zinc finger protein ZF5128)|
          Length = 553

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/35 (48%), Positives = 18/35 (51%)
 Frame = -3

Query: 370 FSGIQDLAAATHLRGGRIGRRFGTDLRAPHFLLGG 266
           F   QDL AA    GGR   R G   + PH LLGG
Sbjct: 207 FGSAQDLEAA----GGRGHHRMGAVWQEPHRLLGG 237

>ZN364_MOUSE (Q9D0C1) Zinc finger protein 364 (Rabring 7)|
          Length = 305

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 254 FLDPPSPIGASRPRHCRPSRAPTRPDRNPSLCGWVKQVW 138
           F  P  P      R  R SR  TRPDR+P++ G ++Q++
Sbjct: 113 FWGPSRPPRLPMTRRYR-SRGSTRPDRSPAIEGIIQQIF 150

>Y4KQ_RHISN (P55535) Very hypothetical 15.3 kDa protein y4kQ|
          Length = 142

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 245 PPSPIGASRPRHCRPSRAPTRPDRNPSLCGWVKQ 144
           PP+P GASRP H R            ++CG VK+
Sbjct: 95  PPAPAGASRPHHNRRPHPSHAVLGMLAVCGHVKR 128

>K1688_MOUSE (P59281) Protein KIAA1688|
          Length = 1107

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 145 CLTQPQRLGLRSGRVGARDGRQCRGREAP 231
           CL + QRLG+RSG     +G + R  + P
Sbjct: 430 CLLRDQRLGVRSGDYSTMEGPESRPSQPP 458

>COAA1_MOUSE (Q05306) Collagen alpha-1(X) chain precursor|
          Length = 680

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +2

Query: 107 VGGPEAIGGRAKPA*PNHKG*GCGPGASGLAMDDSAVG 220
           +G P AIG   +P  P  KG    PGA G+A    A G
Sbjct: 263 IGKPGAIGSPGQPGIPGEKG---HPGAPGIAGPPGAPG 297

>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/46 (39%), Positives = 20/46 (43%)
 Frame = +2

Query: 89  LTAVDEVGGPEAIGGRAKPA*PNHKG*GCGPGASGLAMDDSAVGEK 226
           L  +   GGP   G   KP  P  KG    PGA G   D  A GE+
Sbjct: 639 LQGIPGTGGPP--GENGKPGEPGPKGEVGAPGAPGGKGDSGAPGER 682


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,648,684
Number of Sequences: 219361
Number of extensions: 825076
Number of successful extensions: 2591
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2590
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)