ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl25d02 |
|---|---|
| Clone Library Name | barley_pub |
>WSC4_YEAST (P38739) Cell wall integrity and stress response component 4| precursor Length = 605 Score = 35.4 bits (80), Expect = 0.073 Identities = 25/83 (30%), Positives = 40/83 (48%) Frame = -2 Query: 439 STSSPTRSTQASTVARHASASFWSDGSWRTSERRPCVRTASTMEASSSGWTVLPGCGIRS 260 ST+S T +T +++ + + S S S TS + + ST +SSS T I + Sbjct: 194 STTSSTSTTTSTSSSTSTTVSVTSSTSTTTSTTSSTLISTSTSSSSSSTPTTTSSAPIST 253 Query: 259 PTTTRSRRGLSQLSFTSARKPTA 191 TT+ + S S TS+ PT+ Sbjct: 254 STTSSTSTSTSTTSPTSSSAPTS 276 Score = 30.8 bits (68), Expect = 1.8 Identities = 25/85 (29%), Positives = 42/85 (49%) Frame = -2 Query: 439 STSSPTRSTQASTVARHASASFWSDGSWRTSERRPCVRTASTMEASSSGWTVLPGCGIRS 260 S++S T ST +ST+ +++S S S T+ + T++T S+S T P S Sbjct: 217 SSTSTTTSTTSSTLISTSTSS--SSSSTPTTTSSAPISTSTTSSTSTSTSTTSPTSS--S 272 Query: 259 PTTTRSRRGLSQLSFTSARKPTAPA 185 T+ S + +FT+ TAP+ Sbjct: 273 APTSSSNTTPTSTTFTTTSPSTAPS 297
>YIA_RHISP (P17986) Insertion element ISR1 hypothetical 30.8 kDa protein A| Length = 278 Score = 34.3 bits (77), Expect = 0.16 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 6/89 (6%) Frame = -2 Query: 436 TSSPTRSTQA------STVARHASASFWSDGSWRTSERRPCVRTASTMEASSSGWTVLPG 275 T+S +R+T+A +T A+H+ + R +RRP V ++T A+S+GW G Sbjct: 17 TASNSRTTRAPDSEVSATSAKHSRVQL--SITVRMRKRRPSVSWSATKSATSAGWAPAAG 74 Query: 274 CGIRSPTTTRSRRGLSQLSFTSARKPTAP 188 G R P R RR + A P P Sbjct: 75 HGRRVP-IARLRRAPAHRQLLVAIDPLDP 102
>YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6| Length = 278 Score = 32.7 bits (73), Expect = 0.47 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +2 Query: 293 AGGACLHCRGGAHARSPLRGPPGPVGP 373 AGGAC+ C G + G PGP GP Sbjct: 127 AGGACIQCPAGEAGPAGAPGAPGPAGP 153
>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor| Length = 866 Score = 32.0 bits (71), Expect = 0.81 Identities = 26/89 (29%), Positives = 39/89 (43%) Frame = -2 Query: 445 SLSTSSPTRSTQASTVARHASASFWSDGSWRTSERRPCVRTASTMEASSSGWTVLPGCGI 266 S TSSP+ ++ S+ S+S S S TS P + T + + T P Sbjct: 67 STHTSSPSSTSTQSSSTAATSSSAPSTASSTTSI--PTSTSTETTTTTPTASTTTPTTTT 124 Query: 265 RSPTTTRSRRGLSQLSFTSARKPTAPAIA 179 +PTT + ++ + TSA TA A A Sbjct: 125 AAPTTAATTTAVTTAASTSAETTTATATA 153
>VGLX_EHV1B (P28968) Glycoprotein X precursor| Length = 797 Score = 32.0 bits (71), Expect = 0.81 Identities = 26/89 (29%), Positives = 39/89 (43%) Frame = -2 Query: 445 SLSTSSPTRSTQASTVARHASASFWSDGSWRTSERRPCVRTASTMEASSSGWTVLPGCGI 266 S TSSP+ ++ S+ S+S S S TS P + T + + T P Sbjct: 67 STHTSSPSSTSTQSSSTAATSSSAPSTASSTTSI--PTSTSTETTTTTPTASTTTPTTTT 124 Query: 265 RSPTTTRSRRGLSQLSFTSARKPTAPAIA 179 +PTT + ++ + TSA TA A A Sbjct: 125 AAPTTAATTTAVTTAASTSAETTTATATA 153
>PARB_PSEPU (P0A152) Probable chromosome partitioning protein parB| Length = 290 Score = 31.6 bits (70), Expect = 1.1 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%) Frame = +3 Query: 273 QPGSTVQPEELASIVEAVRTHGLLSEVLQDPSDQKLAE------AWRATVDAWVERVGEL 434 QP + PE L + ++R HG++ ++ P E WRAT A ++ + + Sbjct: 50 QPRRDMDPEALEELAHSIRNHGVMQPIVVRPIGDNRYEIIAGERRWRATQQAGLDTIPAM 109 Query: 435 V 437 V Sbjct: 110 V 110
>PARB_PSEPK (P0A151) Probable chromosome partitioning protein parB| Length = 290 Score = 31.6 bits (70), Expect = 1.1 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%) Frame = +3 Query: 273 QPGSTVQPEELASIVEAVRTHGLLSEVLQDPSDQKLAE------AWRATVDAWVERVGEL 434 QP + PE L + ++R HG++ ++ P E WRAT A ++ + + Sbjct: 50 QPRRDMDPEALEELAHSIRNHGVMQPIVVRPIGDNRYEIIAGERRWRATQQAGLDTIPAM 109 Query: 435 V 437 V Sbjct: 110 V 110
>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 31.6 bits (70), Expect = 1.1 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = +2 Query: 239 SAPSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373 + PSG D +G+ P G A + G+ + GPPGP GP Sbjct: 1062 AGPSGPVGKDGRSGQPGPVGPAGVRGSQGSQGPAGPPGPPGPPGP 1106
>PO2F3_HUMAN (Q9UKI9) POU domain, class 2, transcription factor 3| (Octamer-binding transcription factor 11) (Oct-11) (Transcription factor Skn-1) (PLA-1 protein) Length = 436 Score = 30.8 bits (68), Expect = 1.8 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -2 Query: 451 GESLSTSSPTRSTQASTVARHASASFWSDGSW 356 G L SSPT S S A ++++SF S GSW Sbjct: 395 GSGLHASSPTASQNNSKAAVNSASSFNSSGSW 426
>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 30.8 bits (68), Expect = 1.8 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = +2 Query: 239 SAPSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373 + PSG D +G P G A + G+ + GPPGP GP Sbjct: 1062 AGPSGPIGKDGRSGHPGPVGPAGVRGSQGSQGPAGPPGPPGPPGP 1106
>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1459 Score = 30.8 bits (68), Expect = 1.8 Identities = 16/41 (39%), Positives = 19/41 (46%) Frame = +2 Query: 248 SGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVG 370 +G + A A G AGGA + G RGPPGP G Sbjct: 148 AGNFAAQMAGGYDEKAGGAQMGVMQGPMGPMGPRGPPGPAG 188
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 30.8 bits (68), Expect = 1.8 Identities = 17/40 (42%), Positives = 18/40 (45%) Frame = +2 Query: 251 GGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVG 370 G + A A G AGGA L G RGPPGP G Sbjct: 108 GNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAG 147
>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c| precursor Length = 943 Score = 30.8 bits (68), Expect = 1.8 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 5/90 (5%) Frame = -2 Query: 445 SLSTSSPTRSTQASTVARHASASFWSDGSWRTSERRPCVRTASTMEASSSGWTV-----L 281 ++S+S+P S+ ++T A ASA+ S + TS P +ST +S++ T Sbjct: 248 TVSSSTPLTSSNSTTAATSASATS-SSAQYNTSSLLPSSTPSSTPLSSANSTTATSASST 306 Query: 280 PGCGIRSPTTTRSRRGLSQLSFTSARKPTA 191 P + S TTT S S +SA TA Sbjct: 307 PLTSVNS-TTTTSASSTPLSSVSSANSTTA 335
>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2157 Score = 30.4 bits (67), Expect = 2.3 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Frame = +2 Query: 239 SAPSGGWRADAAAGEHRPAGGACLH---CRGGAHARSPLRGPPGP 364 S+P GG + A RP G + L+ C G + P R PP P Sbjct: 1670 SSPDGGLKGAAEGPPKRPGGSSPLNAVPCEGPPGSEPPRRPPPAP 1714
>SGS3_DROYA (P13728) Salivary glue protein Sgs-3 precursor| Length = 263 Score = 30.4 bits (67), Expect = 2.3 Identities = 19/81 (23%), Positives = 37/81 (45%) Frame = -2 Query: 436 TSSPTRSTQASTVARHASASFWSDGSWRTSERRPCVRTASTMEASSSGWTVLPGCGIRSP 257 T+ + + + +T R + + + T+ RRP R+ +T +++ T R P Sbjct: 76 TTEKSTTRRTTTTTRQTTTRPTTTTTTTTTTRRPTTRSTTTRHTTTTTTTT------RRP 129 Query: 256 TTTRSRRGLSQLSFTSARKPT 194 TTT + + T+ R+PT Sbjct: 130 TTTTTTTRRPTTTTTTTRRPT 150
>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor| Length = 1355 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/45 (37%), Positives = 21/45 (46%) Frame = +2 Query: 239 SAPSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373 + PSG A AG PAG + GG + + GP GP GP Sbjct: 945 TGPSGLAGAPGPAGSAGPAGKSGNRGEGGPSGPAGITGPSGPRGP 989
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 30.4 bits (67), Expect = 2.3 Identities = 16/43 (37%), Positives = 19/43 (44%) Frame = +2 Query: 245 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373 P G A GE GG L G + + +GPPGP GP Sbjct: 582 PKGNDGAPGKNGERGGPGGPGLPGPAGKNGETGPQGPPGPTGP 624 Score = 28.9 bits (63), Expect = 6.8 Identities = 22/50 (44%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Frame = +2 Query: 233 ATSAPSGGWRADAAAGEHRPAGGACL-HCRGGAHARSPL--RGPPGPVGP 373 A AP GG A GE P G A + RGGA P +GP GP GP Sbjct: 666 APGAP-GGKGDSGAPGERGPPGTAGIPGARGGAGPPGPEGGKGPAGPPGP 714
>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1419 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/40 (40%), Positives = 18/40 (45%) Frame = +2 Query: 251 GGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVG 370 G + A A G AGGA + G RGPPGP G Sbjct: 109 GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAG 148
>COIA1_MOUSE (P39061) Collagen alpha-1(XVIII) chain precursor [Contains:| Endostatin] Length = 1774 Score = 30.0 bits (66), Expect = 3.1 Identities = 22/82 (26%), Positives = 26/82 (31%), Gaps = 5/82 (6%) Frame = +2 Query: 146 RPPPVTDPSL-----TSDGXXXXXXXXXXXQLA*ATSAPSGGWRADAAAGEHRPAGGACL 310 +PPPVT P L T D A + P G P G Sbjct: 725 QPPPVTSPPLAGGSTTEDPRTEETEEDAAVDSIGAETLPGTGSSGAWDEAIQNPGRGLIK 784 Query: 311 HCRGGAHARSPLRGPPGPVGPK 376 G +GPPGP GP+ Sbjct: 785 GGMKGQKGEPGAQGPPGPAGPQ 806
>COKA1_HUMAN (Q9P218) Collagen alpha-1(XX) chain precursor| Length = 1329 Score = 30.0 bits (66), Expect = 3.1 Identities = 17/43 (39%), Positives = 18/43 (41%) Frame = +2 Query: 245 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373 P G + AG P G GA S RGPPG VGP Sbjct: 1172 PKGMRGLEGTAGLPGPPGPRGFQGMAGARGTSGERGPPGTVGP 1214
>LIPA_STRAW (Q82AP7) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)| (Lipoate synthase) (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) Length = 328 Score = 29.6 bits (65), Expect = 4.0 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = -1 Query: 266 PLANHHSEQTWLKP-AVVHVREEADGAGHRWLVRGP 162 P HH + W+KP V ++EEA+ G ++ GP Sbjct: 258 PSVRHHPVERWVKPHEFVELKEEAEEIGFSGVMSGP 293
>LIPA_STRCO (Q9S2P2) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)| (Lipoate synthase) (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) Length = 317 Score = 29.6 bits (65), Expect = 4.0 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = -1 Query: 266 PLANHHSEQTWLKP-AVVHVREEADGAGHRWLVRGP 162 P HH + W+KP V ++EEA+ G ++ GP Sbjct: 258 PSVRHHPVERWVKPQEFVELKEEAEQIGFSGVMSGP 293
>TNR19_MOUSE (Q9JLL3) Tumor necrosis factor receptor superfamily member 19| precursor (Toxicity and JNK inducer) (TRADE) Length = 416 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/28 (57%), Positives = 18/28 (64%) Frame = -2 Query: 310 EASSSGWTVLPGCGIRSPTTTRSRRGLS 227 EA SS VL GCG+RSPTT + R S Sbjct: 258 EARSSARAVL-GCGLRSPTTLQERNPAS 284
>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)| Length = 1262 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/43 (37%), Positives = 17/43 (39%) Frame = +2 Query: 245 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373 P G A GE P G G + L GPPGP GP Sbjct: 582 PKGNEGAPGKNGERGPGGPPGTPGPAGKNGDVGLPGPPGPAGP 624 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/43 (39%), Positives = 19/43 (44%) Frame = +2 Query: 245 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373 P+G A AGE G G+ S RGPPGP GP Sbjct: 906 PAGNNGAPGKAGERGFQGPLGPQGAIGSPGASGARGPPGPAGP 948
>YBL2_STRCI (P33654) Hypothetical 14.2 kDa protein in blaB 3'region| Length = 132 Score = 29.3 bits (64), Expect = 5.2 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 11/90 (12%) Frame = -2 Query: 436 TSSPTRSTQASTVARHASASFWSDGSWRT-------SERRPCVRTASTMEASSSGWTVLP 278 TS T S++A +SAS W+ +W+T + R R+ ++M ++SS + P Sbjct: 38 TSFVTSVPATSSIANGSSASSWAIRAWKTTWSRTSPNSSRSSPRSPASMASTSSYISSTP 97 Query: 277 ----GCGIRSPTTTRSRRGLSQLSFTSARK 200 +R +RR S S TS+R+ Sbjct: 98 YLTRSWWVRRALHGHARRIRSMTSTTSSRR 127
>EMID1_MOUSE (Q91VF5) EMI domain-containing protein 1 precursor (Protein Emu1)| (Emilin and multimerin domain-containing protein 1) Length = 444 Score = 29.3 bits (64), Expect = 5.2 Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 2/21 (9%) Frame = +2 Query: 317 RGGAHARSP--LRGPPGPVGP 373 +GG ++SP +RGPPGP GP Sbjct: 208 KGGTDSQSPVRIRGPPGPQGP 228
>MYSC_ACACA (P10569) Myosin IC heavy chain| Length = 1168 Score = 29.3 bits (64), Expect = 5.2 Identities = 17/47 (36%), Positives = 18/47 (38%) Frame = +2 Query: 233 ATSAPSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373 A P G AG P GG + GGA R PPG GP Sbjct: 1075 APGGPGRGGAPPPGAGRAGPPGGRGMPAPGGAAPRGRGAPPPGAGGP 1121
>MEGF6_MOUSE (Q80V70) Multiple epidermal growth factor-like domains 6 (EGF-like| domain-containing protein 3) (Multiple EGF-like domain protein 3) (Fragment) Length = 656 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%) Frame = +2 Query: 254 GWRADAAAGE-HRPAGGACLHCRGGAHARSPLRGPPGPVGP 373 GW +A A H P G +C H G H PPG GP Sbjct: 251 GWFGEACAQRCHCPPGASCHHVSGECHC------PPGFTGP 285
>YQ33_CAEEL (Q09233) Putative cuticle collagen C09G5.3| Length = 283 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +2 Query: 266 DAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVG 370 + A +PA G C+ C G RGPPGP G Sbjct: 120 NGGAALDQPADGTCIKCPPGP------RGPPGPQG 148
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 28.9 bits (63), Expect = 6.8 Identities = 18/43 (41%), Positives = 20/43 (46%) Frame = +2 Query: 245 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373 PSG A AG P G A GA + L G PGP+GP Sbjct: 1120 PSG---ASGPAGPRGPPGSA------GAAGKDGLNGLPGPIGP 1153
>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor| Length = 725 Score = 28.9 bits (63), Expect = 6.8 Identities = 23/84 (27%), Positives = 36/84 (42%) Frame = -2 Query: 445 SLSTSSPTRSTQASTVARHASASFWSDGSWRTSERRPCVRTASTMEASSSGWTVLPGCGI 266 S STS + ST +S + +S++ S S TS +ST +SSS T Sbjct: 223 STSTSPSSTSTSSSLTSTSSSSTSTSQSSTSTSSSSTSTSPSSTSTSSSSTSTSPSSKST 282 Query: 265 RSPTTTRSRRGLSQLSFTSARKPT 194 + +T+ S S ++ PT Sbjct: 283 SASSTSTSSYSTSTSPSLTSSSPT 306
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 28.9 bits (63), Expect = 6.8 Identities = 18/43 (41%), Positives = 20/43 (46%) Frame = +2 Query: 245 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373 PSG A AG P G A GA + L G PGP+GP Sbjct: 1131 PSG---ASGPAGPRGPPGSA------GAPGKDGLNGLPGPIGP 1164
>COL6_CAEEL (P18831) Cuticle collagen 6 (Protein roller-8)| Length = 329 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/29 (44%), Positives = 14/29 (48%) Frame = +2 Query: 290 PAGGACLHCRGGAHARSPLRGPPGPVGPK 376 PA C+ C GA GP GP GPK Sbjct: 178 PASEPCIICPTGAPGPMGAMGPKGPPGPK 206
>COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Contains:| Endostatin] Length = 1516 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = +2 Query: 290 PAGGACLHCRGGAHARSPLRGPPGPVG 370 P GGA + GA RGPPGP G Sbjct: 951 PDGGALGPAQKGAKGEPGFRGPPGPYG 977
>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/38 (42%), Positives = 17/38 (44%) Frame = +2 Query: 263 ADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGPK 376 A A G H P G A H G S GP G VGP+ Sbjct: 959 AAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPR 996
>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = +2 Query: 239 SAPSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373 + PSG D G+ G A + G+ + GPPGP GP Sbjct: 1056 AGPSGPAGKDGRTGQPGTVGPAGIRGSQGSQGPAGPPGPPGPPGP 1100
>RL2_CLOPE (Q8XHS6) 50S ribosomal protein L2| Length = 277 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/40 (40%), Positives = 17/40 (42%) Frame = +2 Query: 254 GWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373 GWR P C H GG RSP+ G P PV P Sbjct: 215 GWRPTVRGSVMNP----CDHPHGGGEGRSPI-GRPSPVTP 249
>PHLPP_RAT (Q9WTR8) PH domain leucine-rich repeat protein phosphatase (EC| 3.1.3.16) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory protein) Length = 1696 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = +2 Query: 233 ATSAPSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPV 367 A +A GG D+ P+GG G A +P PPGP+ Sbjct: 24 AAAAAEGGRSPDSVLSAAAPSGGN----GGAAREEAPCEAPPGPL 64
>SMG_SHEON (Q8EKQ5) Protein smg homolog| Length = 158 Score = 28.5 bits (62), Expect = 8.9 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +3 Query: 411 WVERVGELVESDSPYSC 461 W+ER+ EL E D PY C Sbjct: 46 WLERLAELQEGDKPYLC 62
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 28.5 bits (62), Expect = 8.9 Identities = 23/70 (32%), Positives = 24/70 (34%), Gaps = 25/70 (35%) Frame = +2 Query: 236 TSAPSGGWRADAAAGEHRPAGGA--------CLHC-----------------RGGAHARS 340 T+ PSGG A AA RP GG C C R G R Sbjct: 1581 TAVPSGGGGAAAAGRRDRPGGGGGWGSGPPPCRRCGHRCWLCWWRRGPRPRRRPGLTDRV 1640 Query: 341 PLRGPPGPVG 370 P RG P P G Sbjct: 1641 PPRGGPSPRG 1650
>PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing protein| phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat protein phosphatase) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory Length = 1687 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = +2 Query: 233 ATSAPSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPV 367 A +A GG D A P+GG G A +P PPGP+ Sbjct: 23 AAAAAEGGRCPDPALSAAAPSGGN----GGAAREEAPCEAPPGPL 63
>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain| Length = 1049 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/43 (34%), Positives = 18/43 (41%) Frame = +2 Query: 245 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373 P G A GE GG G + + +GPPGP GP Sbjct: 427 PKGNDGAPGKNGERGGPGGPGPQGPAGKNGETGPQGPPGPTGP 469 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,935,109 Number of Sequences: 219361 Number of extensions: 1033003 Number of successful extensions: 5686 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 4009 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5553 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
