>dbj|AK069962.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037D24, full
           insert sequence
          Length = 3065

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 78/90 (86%)
 Strand = Plus / Plus

                                                                       
Query: 375 aagctcgccgaggcgtggcgcgccacggtcgacgcctgggtcgagcgcgtcggngagctc 434
           |||||||||||||||||||| ||| | |||||||| |||||||||||| | || ||||||
Sbjct: 305 aagctcgccgaggcgtggcgtgccgccgtcgacgcgtgggtcgagcgcattggtgagctc 364

                                         
Query: 435 gtggagagcgactcgccatacagttgttgg 464
            || ||| | ||| ||||||||||||||||
Sbjct: 365 atgcagaacaacttgccatacagttgttgg 394



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 115/143 (80%)
 Strand = Plus / Plus

                                                                       
Query: 201 ttcctcgcggacgtgaacgacagctggcttaagccacgtctgctccgagtggtggttggc 260
           |||||||| |||| |||||||  |||||| ||||| || ||||| || | |||||| |||
Sbjct: 131 ttcctcgccgacgcgaacgacccctggctcaagccgcggctgctgcgggcggtggtcggc 190

                                                                       
Query: 261 gagcggatgccgcagccggggagcaccgtccagccggaggagcttgcctccattgtcgag 320
           |||||| |||||  ||| |||| |  | | | ||||| |||||| ||||||||  |||| 
Sbjct: 191 gagcggctgccgaggcccgggaccgacctgccgccggcggagctcgcctccatcctcgac 250

                                  
Query: 321 gcggtgcgcacgcacggtctcct 343
           |||||||||||||| || |||||
Sbjct: 251 gcggtgcgcacgcatggcctcct 273

>gb|AC135922.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0411C02,
             complete sequence
          Length = 145676

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                         
Query: 375   aagctcgccgaggcgtggcgcgccacggtcgacgcctgggtcgagcgcgtcggngagctc 434
             |||||||||||||||||||| ||| | |||||||| |||||||||||| | || ||||||
Sbjct: 62113 aagctcgccgaggcgtggcgtgccgccgtcgacgcgtgggtcgagcgcattggtgagctc 62054



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 115/143 (80%)
 Strand = Plus / Minus

                                                                         
Query: 201   ttcctcgcggacgtgaacgacagctggcttaagccacgtctgctccgagtggtggttggc 260
             |||||||| |||| |||||||  |||||| ||||| || ||||| || | |||||| |||
Sbjct: 62287 ttcctcgccgacgcgaacgacccctggctcaagccgcggctgctgcgggcggtggtcggc 62228

                                                                         
Query: 261   gagcggatgccgcagccggggagcaccgtccagccggaggagcttgcctccattgtcgag 320
             |||||| |||||  ||| |||| |  | | | ||||| |||||| ||||||||  |||| 
Sbjct: 62227 gagcggctgccgaggcccgggaccgacctgccgccggcggagctcgcctccatcctcgac 62168

                                    
Query: 321   gcggtgcgcacgcacggtctcct 343
             |||||||||||||| || |||||
Sbjct: 62167 gcggtgcgcacgcatggcctcct 62145

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                            
Query: 375      aagctcgccgaggcgtggcgcgccacggtcgacgcctgggtcgagcgcgtcggngagctc 434
                |||||||||||||||||||| ||| | |||||||| |||||||||||| | || ||||||
Sbjct: 12982044 aagctcgccgaggcgtggcgtgccgccgtcgacgcgtgggtcgagcgcattggtgagctc 12981985



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 115/143 (80%)
 Strand = Plus / Minus

                                                                            
Query: 201      ttcctcgcggacgtgaacgacagctggcttaagccacgtctgctccgagtggtggttggc 260
                |||||||| |||| |||||||  |||||| ||||| || ||||| || | |||||| |||
Sbjct: 12982218 ttcctcgccgacgcgaacgacccctggctcaagccgcggctgctgcgggcggtggtcggc 12982159

                                                                            
Query: 261      gagcggatgccgcagccggggagcaccgtccagccggaggagcttgcctccattgtcgag 320
                |||||| |||||  ||| |||| |  | | | ||||| |||||| ||||||||  |||| 
Sbjct: 12982158 gagcggctgccgaggcccgggaccgacctgccgccggcggagctcgcctccatcctcgac 12982099

                                       
Query: 321      gcggtgcgcacgcacggtctcct 343
                |||||||||||||| || |||||
Sbjct: 12982098 gcggtgcgcacgcatggcctcct 12982076

>gb|AC167718.4| Culex pipiens quinquefasciatus, clone Culex pipiens
            quinquefasciatus-3940130D9, complete sequence
          Length = 117683

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 378  ctcgccgaggcgtggcgcgccacggt 403
            |||||||||||||||||||| |||||
Sbjct: 3976 ctcgccgaggcgtggcgcgcgacggt 3951

>gb|AC167662.6| Culex pipiens quinquefasciatus, clone Culex pipiens
              quinquefasciatus-3940141D9, complete sequence
          Length = 117679

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 378    ctcgccgaggcgtggcgcgccacggt 403
              |||||||||||||||||||| |||||
Sbjct: 113706 ctcgccgaggcgtggcgcgcgacggt 113731

>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16
          Length = 347356

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 383    cgaggcgtggcgcgccacggt 403
              |||||||||||||||||||||
Sbjct: 120458 cgaggcgtggcgcgccacggt 120438

>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14
          Length = 348251

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 383    cgaggcgtggcgcgccacggt 403
              |||||||||||||||||||||
Sbjct: 124653 cgaggcgtggcgcgccacggt 124633

>emb|BX640413.1| Bordetella pertussis strain Tohama I, complete genome; segment 3/12
          Length = 349028

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 383   cgaggcgtggcgcgccacggt 403
             |||||||||||||||||||||
Sbjct: 33216 cgaggcgtggcgcgccacggt 33196

>gb|AF279141.1|AF279141 Rhodococcus sp. 19070 benzoate dioxygenase large subunit (bopX),
            benzoate dioxygenase small subunit (bopY), benzoate
            dioxygenase reductase (bopZ), cis-diol dehydrogenase
            (bopL), and benzoate transport protein (bopK) genes,
            complete cds
          Length = 6058

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 315  gtcgaggcggtgcgcacgcac 335
            |||||||||||||||||||||
Sbjct: 2875 gtcgaggcggtgcgcacgcac 2895

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 185     ggccggcgccgtcggcttcct 205
               |||||||||||||||||||||
Sbjct: 3783935 ggccggcgccgtcggcttcct 3783915

>gb|AY433941.1| Pseudomonas fluorescens strain A24 naphthalene dioxygenase large
           subunit (nahAc) gene, partial cds
          Length = 831

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 440 gagcgactcgccatacagtt 459
           ||||||||||||||||||||
Sbjct: 219 gagcgactcgccatacagtt 200

>gb|AY433940.1| Pseudomonas fluorescens strain I-16 naphthalene dioxygenase large
           subunit (nahAc) gene, partial cds
          Length = 831

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 440 gagcgactcgccatacagtt 459
           ||||||||||||||||||||
Sbjct: 219 gagcgactcgccatacagtt 200

>gb|AY433939.1| Pseudomonas fluorescens strain A88 naphthalene dioxygenase large
           subunit (nahAc) gene, partial cds
          Length = 831

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 440 gagcgactcgccatacagtt 459
           ||||||||||||||||||||
Sbjct: 219 gagcgactcgccatacagtt 200

>gb|AY298859.1| Xiphophorus maculatus Rex3 retrotransposon, Rex2 retrotransposon, and
             Rex1 retrotransposon, complete sequence
          Length = 48940

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 305   tgcctccattgtcgaggcgg 324
             ||||||||||||||||||||
Sbjct: 11266 tgcctccattgtcgaggcgg 11247

>emb|AJ496395.1|PSP496395 Pseudomonas sp. 5N1-1 partial mRNA for naphthalene dioxygenase iron
           sulfur protein (nahAc gene), strain 5N1-1
          Length = 832

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 440 gagcgactcgccatacagtt 459
           ||||||||||||||||||||
Sbjct: 220 gagcgactcgccatacagtt 201

>emb|AJ496394.1|PSP496394 Pseudomonas sp. 4N4-1 partial mRNA for naphthalene dioxygenase iron
           sulfur protein (nahAc gene), strain 4N4-1
          Length = 832

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 440 gagcgactcgccatacagtt 459
           ||||||||||||||||||||
Sbjct: 220 gagcgactcgccatacagtt 201

>emb|AJ496393.1|PSP496393 Pseudomonas sp. 4N1-3 partial mRNA for naphthalene dioxygenase iron
           sulfur protein (nahAc gene), strain 4N1-3
          Length = 832

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 440 gagcgactcgccatacagtt 459
           ||||||||||||||||||||
Sbjct: 220 gagcgactcgccatacagtt 201

>emb|AJ496392.1|PSP496392 Pseudomonas sp. 4N1-2 partial mRNA for naphthalene dioxygenase iron
           sulfur protein (nahAc gene), strain 4N1-2
          Length = 832

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 440 gagcgactcgccatacagtt 459
           ||||||||||||||||||||
Sbjct: 220 gagcgactcgccatacagtt 201

>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    tggccggcgccgtcggcttc 203
              ||||||||||||||||||||
Sbjct: 576969 tggccggcgccgtcggcttc 576988

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 379     tcgccgaggcgtggcgcgcc 398
               ||||||||||||||||||||
Sbjct: 5098868 tcgccgaggcgtggcgcgcc 5098849



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 387     gcgtggcgcgccacggtcgacgcc 410
               |||||||||| |||||||||||||
Sbjct: 2424143 gcgtggcgcggcacggtcgacgcc 2424120

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 60      ccggagccgccgccttcttc 79
               ||||||||||||||||||||
Sbjct: 6918691 ccggagccgccgccttcttc 6918672

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 135     cccaagtccggcgcccgcct 154
               ||||||||||||||||||||
Sbjct: 5900261 cccaagtccggcgcccgcct 5900242

>dbj|AP005522.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0479H10
          Length = 139874

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     ccggagccgccgccttcttc 79
              ||||||||||||||||||||
Sbjct: 108216 ccggagccgccgccttcttc 108197

>ref|XM_564049.1| Anopheles gambiae str. PEST ENSANGP00000025832
           (ENSANGG00000024008), partial mRNA
          Length = 672

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 47  ccatccctccatcccggagc 66
           ||||||||||||||||||||
Sbjct: 356 ccatccctccatcccggagc 375

>dbj|AK102149.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086C22, full
           insert sequence
          Length = 884

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  ccggagccgccgccttcttc 79
           ||||||||||||||||||||
Sbjct: 155 ccggagccgccgccttcttc 174

>gb|AF125982.1|AF125982 Xiphophorus maculatus retrotransposon Rex3b endonuclease/reverse
           transcriptase (EN/RT) pseudogene, partial sequence; and
           unknown gene
          Length = 2624

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 305 tgcctccattgtcgaggcgg 324
           ||||||||||||||||||||
Sbjct: 549 tgcctccattgtcgaggcgg 568

>gb|AF125981.1|AF125981 Xiphophorus maculatus retrotransposon Rex3a reverse transcriptase
           (RT) pseudogene, complete sequence
          Length = 2109

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 305 tgcctccattgtcgaggcgg 324
           ||||||||||||||||||||
Sbjct: 339 tgcctccattgtcgaggcgg 320

>dbj|AK072147.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128D23, full
           insert sequence
          Length = 2049

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  ccggagccgccgccttcttc 79
           ||||||||||||||||||||
Sbjct: 129 ccggagccgccgccttcttc 148


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,637,054
Number of Sequences: 3902068
Number of extensions: 2637054
Number of successful extensions: 62454
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61777
Number of HSP's gapped (non-prelim): 677
length of query: 464
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 442
effective length of database: 17,147,199,772
effective search space: 7579062299224
effective search space used: 7579062299224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)