ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl25c10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_549953.1| Oryza sativa (japonica cultivar-group), mRNA Length = 807 Score = 325 bits (164), Expect = 6e-86 Identities = 281/320 (87%) Strand = Plus / Plus Query: 69 tctccggcgatctacaggagtagatcggccccggagacccctcgccccggccatggcgac 128 |||||||||||||||||| |||||||| |||||||| | || ||||||||||||| Sbjct: 106 tctccggcgatctacaggtgtagatcgcttccggagacatccaaccgcggccatggcgac 165 Query: 129 cttcgcgaagcccgagaacgcgctcaagagagcggaggagttgatacatgttggacaaaa 188 ||||||||| || ||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 166 cttcgcgaaacctgagaacgcgctcaagagagcggaggagttgatacatgttgggcagaa 225 Query: 189 gcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagatacagatcatggca 248 |||||| ||||| |||||| | ||||||||||| || ||||| |||||||| |||||||| Sbjct: 226 gcaggcagcgctacaggcgttacatgatctcatcacttcaaaaagatacaggtcatggca 285 Query: 249 aaagcctcttgagaagatcatgatgaagtatgtggagctgtgtgttgatctaaggaaggg 308 |||||| || || | ||| |||||||||||||||||||| ||||| || || |||||||| Sbjct: 286 aaagccactcgaaaggattatgatgaagtatgtggagctctgtgtagacctgaggaaggg 345 Query: 309 cagatttgccaaagatggccttattcagtacagaattgtctgccagcaagtcaacgtgtc 368 ||| ||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||| Sbjct: 346 caggtttgcgaaagatggccttattcagtacaggattgtctgccagcaagtgaatgtgtc 405 Query: 369 atctctggaggaggtcataa 388 ||| |||||||||| |||| Sbjct: 406 atccttggaggaggtgataa 425
>ref|XM_549952.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3419 Score = 325 bits (164), Expect = 6e-86 Identities = 281/320 (87%) Strand = Plus / Plus Query: 69 tctccggcgatctacaggagtagatcggccccggagacccctcgccccggccatggcgac 128 |||||||||||||||||| |||||||| |||||||| | || ||||||||||||| Sbjct: 130 tctccggcgatctacaggtgtagatcgcttccggagacatccaaccgcggccatggcgac 189 Query: 129 cttcgcgaagcccgagaacgcgctcaagagagcggaggagttgatacatgttggacaaaa 188 ||||||||| || ||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 190 cttcgcgaaacctgagaacgcgctcaagagagcggaggagttgatacatgttgggcagaa 249 Query: 189 gcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagatacagatcatggca 248 |||||| ||||| |||||| | ||||||||||| || ||||| |||||||| |||||||| Sbjct: 250 gcaggcagcgctacaggcgttacatgatctcatcacttcaaaaagatacaggtcatggca 309 Query: 249 aaagcctcttgagaagatcatgatgaagtatgtggagctgtgtgttgatctaaggaaggg 308 |||||| || || | ||| |||||||||||||||||||| ||||| || || |||||||| Sbjct: 310 aaagccactcgaaaggattatgatgaagtatgtggagctctgtgtagacctgaggaaggg 369 Query: 309 cagatttgccaaagatggccttattcagtacagaattgtctgccagcaagtcaacgtgtc 368 ||| ||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||| Sbjct: 370 caggtttgcgaaagatggccttattcagtacaggattgtctgccagcaagtgaatgtgtc 429 Query: 369 atctctggaggaggtcataa 388 ||| |||||||||| |||| Sbjct: 430 atccttggaggaggtgataa 449
>dbj|AK122166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147M02, full insert sequence Length = 3419 Score = 325 bits (164), Expect = 6e-86 Identities = 281/320 (87%) Strand = Plus / Plus Query: 69 tctccggcgatctacaggagtagatcggccccggagacccctcgccccggccatggcgac 128 |||||||||||||||||| |||||||| |||||||| | || ||||||||||||| Sbjct: 130 tctccggcgatctacaggtgtagatcgcttccggagacatccaaccgcggccatggcgac 189 Query: 129 cttcgcgaagcccgagaacgcgctcaagagagcggaggagttgatacatgttggacaaaa 188 ||||||||| || ||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 190 cttcgcgaaacctgagaacgcgctcaagagagcggaggagttgatacatgttgggcagaa 249 Query: 189 gcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagatacagatcatggca 248 |||||| ||||| |||||| | ||||||||||| || ||||| |||||||| |||||||| Sbjct: 250 gcaggcagcgctacaggcgttacatgatctcatcacttcaaaaagatacaggtcatggca 309 Query: 249 aaagcctcttgagaagatcatgatgaagtatgtggagctgtgtgttgatctaaggaaggg 308 |||||| || || | ||| |||||||||||||||||||| ||||| || || |||||||| Sbjct: 310 aaagccactcgaaaggattatgatgaagtatgtggagctctgtgtagacctgaggaaggg 369 Query: 309 cagatttgccaaagatggccttattcagtacagaattgtctgccagcaagtcaacgtgtc 368 ||| ||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||| Sbjct: 370 caggtttgcgaaagatggccttattcagtacaggattgtctgccagcaagtgaatgtgtc 429 Query: 369 atctctggaggaggtcataa 388 ||| |||||||||| |||| Sbjct: 430 atccttggaggaggtgataa 449
>dbj|AK121302.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111A13, full insert sequence Length = 806 Score = 325 bits (164), Expect = 6e-86 Identities = 281/320 (87%) Strand = Plus / Plus Query: 69 tctccggcgatctacaggagtagatcggccccggagacccctcgccccggccatggcgac 128 |||||||||||||||||| |||||||| |||||||| | || ||||||||||||| Sbjct: 105 tctccggcgatctacaggtgtagatcgcttccggagacatccaaccgcggccatggcgac 164 Query: 129 cttcgcgaagcccgagaacgcgctcaagagagcggaggagttgatacatgttggacaaaa 188 ||||||||| || ||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 165 cttcgcgaaacctgagaacgcgctcaagagagcggaggagttgatacatgttgggcagaa 224 Query: 189 gcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagatacagatcatggca 248 |||||| ||||| |||||| | ||||||||||| || ||||| |||||||| |||||||| Sbjct: 225 gcaggcagcgctacaggcgttacatgatctcatcacttcaaaaagatacaggtcatggca 284 Query: 249 aaagcctcttgagaagatcatgatgaagtatgtggagctgtgtgttgatctaaggaaggg 308 |||||| || || | ||| |||||||||||||||||||| ||||| || || |||||||| Sbjct: 285 aaagccactcgaaaggattatgatgaagtatgtggagctctgtgtagacctgaggaaggg 344 Query: 309 cagatttgccaaagatggccttattcagtacagaattgtctgccagcaagtcaacgtgtc 368 ||| ||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||| Sbjct: 345 caggtttgcgaaagatggccttattcagtacaggattgtctgccagcaagtgaatgtgtc 404 Query: 369 atctctggaggaggtcataa 388 ||| |||||||||| |||| Sbjct: 405 atccttggaggaggtgataa 424
>dbj|AK106560.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-B08, full insert sequence Length = 2691 Score = 325 bits (164), Expect = 6e-86 Identities = 281/320 (87%) Strand = Plus / Plus Query: 69 tctccggcgatctacaggagtagatcggccccggagacccctcgccccggccatggcgac 128 |||||||||||||||||| |||||||| |||||||| | || ||||||||||||| Sbjct: 101 tctccggcgatctacaggtgtagatcgcttccggagacatccaaccgcggccatggcgac 160 Query: 129 cttcgcgaagcccgagaacgcgctcaagagagcggaggagttgatacatgttggacaaaa 188 ||||||||| || ||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 161 cttcgcgaaacctgagaacgcgctcaagagagcggaggagttgatacatgttgggcagaa 220 Query: 189 gcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagatacagatcatggca 248 |||||| ||||| |||||| | ||||||||||| || ||||| |||||||| |||||||| Sbjct: 221 gcaggcagcgctacaggcgttacatgatctcatcacttcaaaaagatacaggtcatggca 280 Query: 249 aaagcctcttgagaagatcatgatgaagtatgtggagctgtgtgttgatctaaggaaggg 308 |||||| || || | ||| |||||||||||||||||||| ||||| || || |||||||| Sbjct: 281 aaagccactcgaaaggattatgatgaagtatgtggagctctgtgtagacctgaggaaggg 340 Query: 309 cagatttgccaaagatggccttattcagtacagaattgtctgccagcaagtcaacgtgtc 368 ||| ||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||| Sbjct: 341 caggtttgcgaaagatggccttattcagtacaggattgtctgccagcaagtgaatgtgtc 400 Query: 369 atctctggaggaggtcataa 388 ||| |||||||||| |||| Sbjct: 401 atccttggaggaggtgataa 420
>dbj|AK073457.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041I03, full insert sequence Length = 2175 Score = 325 bits (164), Expect = 6e-86 Identities = 281/320 (87%) Strand = Plus / Plus Query: 69 tctccggcgatctacaggagtagatcggccccggagacccctcgccccggccatggcgac 128 |||||||||||||||||| |||||||| |||||||| | || ||||||||||||| Sbjct: 101 tctccggcgatctacaggtgtagatcgcttccggagacatccaaccgcggccatggcgac 160 Query: 129 cttcgcgaagcccgagaacgcgctcaagagagcggaggagttgatacatgttggacaaaa 188 ||||||||| || ||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 161 cttcgcgaaacctgagaacgcgctcaagagagcggaggagttgatacatgttgggcagaa 220 Query: 189 gcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagatacagatcatggca 248 |||||| ||||| |||||| | ||||||||||| || ||||| |||||||| |||||||| Sbjct: 221 gcaggcagcgctacaggcgttacatgatctcatcacttcaaaaagatacaggtcatggca 280 Query: 249 aaagcctcttgagaagatcatgatgaagtatgtggagctgtgtgttgatctaaggaaggg 308 |||||| || || | ||| |||||||||||||||||||| ||||| || || |||||||| Sbjct: 281 aaagccactcgaaaggattatgatgaagtatgtggagctctgtgtagacctgaggaaggg 340 Query: 309 cagatttgccaaagatggccttattcagtacagaattgtctgccagcaagtcaacgtgtc 368 ||| ||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||| Sbjct: 341 caggtttgcgaaagatggccttattcagtacaggattgtctgccagcaagtgaatgtgtc 400 Query: 369 atctctggaggaggtcataa 388 ||| |||||||||| |||| Sbjct: 401 atccttggaggaggtgataa 420
>dbj|AK063986.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-D10, full insert sequence Length = 1907 Score = 325 bits (164), Expect = 6e-86 Identities = 281/320 (87%) Strand = Plus / Plus Query: 69 tctccggcgatctacaggagtagatcggccccggagacccctcgccccggccatggcgac 128 |||||||||||||||||| |||||||| |||||||| | || ||||||||||||| Sbjct: 100 tctccggcgatctacaggtgtagatcgcttccggagacatccaaccgcggccatggcgac 159 Query: 129 cttcgcgaagcccgagaacgcgctcaagagagcggaggagttgatacatgttggacaaaa 188 ||||||||| || ||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 160 cttcgcgaaacctgagaacgcgctcaagagagcggaggagttgatacatgttgggcagaa 219 Query: 189 gcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagatacagatcatggca 248 |||||| ||||| |||||| | ||||||||||| || ||||| |||||||| |||||||| Sbjct: 220 gcaggcagcgctacaggcgttacatgatctcatcacttcaaaaagatacaggtcatggca 279 Query: 249 aaagcctcttgagaagatcatgatgaagtatgtggagctgtgtgttgatctaaggaaggg 308 |||||| || || | ||| |||||||||||||||||||| ||||| || || |||||||| Sbjct: 280 aaagccactcgaaaggattatgatgaagtatgtggagctctgtgtagacctgaggaaggg 339 Query: 309 cagatttgccaaagatggccttattcagtacagaattgtctgccagcaagtcaacgtgtc 368 ||| ||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||| Sbjct: 340 caggtttgcgaaagatggccttattcagtacaggattgtctgccagcaagtgaatgtgtc 399 Query: 369 atctctggaggaggtcataa 388 ||| |||||||||| |||| Sbjct: 400 atccttggaggaggtgataa 419
>emb|AJ437346.1|OSA437346 Oryza sativa mRNA translation initiation factor 3 large subunit (eIF3a gene) Length = 3445 Score = 301 bits (152), Expect = 9e-79 Identities = 239/268 (89%) Strand = Plus / Plus Query: 121 atggcgaccttcgcgaagcccgagaacgcgctcaagagagcggaggagttgatacatgtt 180 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 85 atggcgaccttcgcgaaacctgagaacgcgctcaagagagcggaggagttgatacatgtt 144 Query: 181 ggacaaaagcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagatacaga 240 || || |||||||| ||||| |||||| | ||||||||||| || ||||| |||||||| Sbjct: 145 gggcagaagcaggcagcgctacaggcgttacatgatctcatcacttcaaaaagatacagg 204 Query: 241 tcatggcaaaagcctcttgagaagatcatgatgaagtatgtggagctgtgtgttgatcta 300 |||||||||||||| || || | ||| |||||||||||||||||||| ||||| || || Sbjct: 205 tcatggcaaaagccactcgaaaggattatgatgaagtatgtggagctctgtgtagacctg 264 Query: 301 aggaagggcagatttgccaaagatggccttattcagtacagaattgtctgccagcaagtc 360 ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct: 265 aggaagggcaggtttgcgaaagatggccttattcagtacaggattgtctgccagcaagtg 324 Query: 361 aacgtgtcatctctggaggaggtcataa 388 || |||||||| |||||||||| |||| Sbjct: 325 aatgtgtcatccttggaggaggtgataa 352
>gb|AY109549.1| Zea mays CL1501_1 mRNA sequence Length = 3314 Score = 230 bits (116), Expect = 3e-57 Identities = 230/268 (85%) Strand = Plus / Plus Query: 121 atggcgaccttcgcgaagcccgagaacgcgctcaagagagcggaggagttgatacatgtt 180 |||||||| |||||||| || ||||||||||| |||||||| || || || || |||||| Sbjct: 159 atggcgactttcgcgaaacctgagaacgcgctgaagagagccgaagaattaatccatgtt 218 Query: 181 ggacaaaagcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagatacaga 240 || ||||||||| | || |||||||| | |||||||||||||| || || || ||||| Sbjct: 219 ggtcaaaagcagtcagccctgcaggctttacatgatctcattacctcgaaaaggtacagg 278 Query: 241 tcatggcaaaagcctcttgagaagatcatgatgaagtatgtggagctgtgtgttgatcta 300 |||||||| |||||||| || |||||||||||||||||||| || || |||||||| || Sbjct: 279 tcatggcagaagcctctcgaaaagatcatgatgaagtatgtagaactctgtgttgacctg 338 Query: 301 aggaagggcagatttgccaaagatggccttattcagtacagaattgtctgccagcaagtc 360 ||||| ||||||||||| |||||||| ||||||||||| || ||||||||||||||||| Sbjct: 339 aggaaaggcagatttgcaaaagatggtcttattcagtataggattgtctgccagcaagta 398 Query: 361 aacgtgtcatctctggaggaggtcataa 388 ||||||||||| ||||||| ||||||| Sbjct: 399 aacgtgtcatccttggaggatgtcataa 426
>gb|AF073329.1|AF073329 Zea mays eukaryotic translation initiation factor 3 large subunit mRNA, complete cds Length = 3293 Score = 230 bits (116), Expect = 3e-57 Identities = 230/268 (85%) Strand = Plus / Plus Query: 121 atggcgaccttcgcgaagcccgagaacgcgctcaagagagcggaggagttgatacatgtt 180 |||||||| |||||||| || ||||||||||| |||||||| || || || || |||||| Sbjct: 159 atggcgactttcgcgaaacctgagaacgcgctgaagagagccgaagaattaatccatgtt 218 Query: 181 ggacaaaagcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagatacaga 240 || ||||||||| | || |||||||| | |||||||||||||| || || || ||||| Sbjct: 219 ggtcaaaagcagtcagccctgcaggctttacatgatctcattacctcgaaaaggtacagg 278 Query: 241 tcatggcaaaagcctcttgagaagatcatgatgaagtatgtggagctgtgtgttgatcta 300 |||||||| |||||||| || |||||||||||||||||||| || || |||||||| || Sbjct: 279 tcatggcagaagcctctcgaaaagatcatgatgaagtatgtagaactctgtgttgacctg 338 Query: 301 aggaagggcagatttgccaaagatggccttattcagtacagaattgtctgccagcaagtc 360 ||||| ||||||||||| |||||||| ||||||||||| || ||||||||||||||||| Sbjct: 339 aggaaaggcagatttgcaaaagatggtcttattcagtataggattgtctgccagcaagta 398 Query: 361 aacgtgtcatctctggaggaggtcataa 388 ||||||||||| ||||||| ||||||| Sbjct: 399 aacgtgtcatccttggaggatgtcataa 426
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 228 bits (115), Expect = 1e-56 Identities = 196/223 (87%) Strand = Plus / Minus Query: 166 gagttgatacatgttggacaaaagcaggctgcgctgcaggcgctgcatgatctcattaca 225 ||||||||||||||||| || |||||||| ||||| |||||| | ||||||||||| || Sbjct: 1177684 gagttgatacatgttgggcagaagcaggcagcgctacaggcgttacatgatctcatcact 1177625 Query: 226 tcaaagagatacagatcatggcaaaagcctcttgagaagatcatgatgaagtatgtggag 285 ||||| |||||||| |||||||||||||| || || | ||| |||||||||||||||||| Sbjct: 1177624 tcaaaaagatacaggtcatggcaaaagccactcgaaaggattatgatgaagtatgtggag 1177565 Query: 286 ctgtgtgttgatctaaggaagggcagatttgccaaagatggccttattcagtacagaatt 345 || ||||| || || ||||||||||| ||||| ||||||||||||||||||||||| ||| Sbjct: 1177564 ctctgtgtagacctgaggaagggcaggtttgcgaaagatggccttattcagtacaggatt 1177505 Query: 346 gtctgccagcaagtcaacgtgtcatctctggaggaggtcataa 388 |||||||||||||| || |||||||| |||||||||| |||| Sbjct: 1177504 gtctgccagcaagtgaatgtgtcatccttggaggaggtgataa 1177462 Score = 85.7 bits (43), Expect = 1e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 116 cggccatggcgaccttcgcgaagcccgagaacgcgctcaagagagcggagg 166 |||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 1177980 cggccatggcgaccttcgcgaaacctgagaacgcgctcaagagagcggagg 1177930
>dbj|AP002487.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684C01 Length = 78600 Score = 228 bits (115), Expect = 1e-56 Identities = 196/223 (87%) Strand = Plus / Minus Query: 166 gagttgatacatgttggacaaaagcaggctgcgctgcaggcgctgcatgatctcattaca 225 ||||||||||||||||| || |||||||| ||||| |||||| | ||||||||||| || Sbjct: 31987 gagttgatacatgttgggcagaagcaggcagcgctacaggcgttacatgatctcatcact 31928 Query: 226 tcaaagagatacagatcatggcaaaagcctcttgagaagatcatgatgaagtatgtggag 285 ||||| |||||||| |||||||||||||| || || | ||| |||||||||||||||||| Sbjct: 31927 tcaaaaagatacaggtcatggcaaaagccactcgaaaggattatgatgaagtatgtggag 31868 Query: 286 ctgtgtgttgatctaaggaagggcagatttgccaaagatggccttattcagtacagaatt 345 || ||||| || || ||||||||||| ||||| ||||||||||||||||||||||| ||| Sbjct: 31867 ctctgtgtagacctgaggaagggcaggtttgcgaaagatggccttattcagtacaggatt 31808 Query: 346 gtctgccagcaagtcaacgtgtcatctctggaggaggtcataa 388 |||||||||||||| || |||||||| |||||||||| |||| Sbjct: 31807 gtctgccagcaagtgaatgtgtcatccttggaggaggtgataa 31765 Score = 85.7 bits (43), Expect = 1e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 116 cggccatggcgaccttcgcgaagcccgagaacgcgctcaagagagcggagg 166 |||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 32283 cggccatggcgaccttcgcgaaacctgagaacgcgctcaagagagcggagg 32233
>gb|AC165174.2| Zea mays clone ZMMBBb-127F19, complete sequence Length = 187659 Score = 194 bits (98), Expect = 1e-46 Identities = 185/214 (86%) Strand = Plus / Minus Query: 175 catgttggacaaaagcaggctgcgctgcaggcgctgcatgatctcattacatcaaagaga 234 |||||||| ||||||||||| || |||||||| | |||||||||||||| ||||| || Sbjct: 119417 catgttgggcaaaagcaggcagcactgcaggctttacatgatctcattacctcaaaaagg 119358 Query: 235 tacagatcatggcaaaagcctcttgagaagatcatgatgaagtatgtggagctgtgtgtt 294 ||||| |||||||| |||||||| || |||||||||||||||||||| || || |||||| Sbjct: 119357 tacaggtcatggcagaagcctctcgaaaagatcatgatgaagtatgtagaactctgtgtt 119298 Query: 295 gatctaaggaagggcagatttgccaaagatggccttattcagtacagaattgtctgccag 354 || || ||||| ||||||||||| |||||||| ||||||||||| || ||||| || ||| Sbjct: 119297 gacctgaggaaaggcagatttgcaaaagatggtcttattcagtataggattgtgtgtcag 119238 Query: 355 caagtcaacgtgtcatctctggaggaggtcataa 388 ||||| ||||||||||| ||||||| ||||||| Sbjct: 119237 caagtaaacgtgtcatccttggaggatgtcataa 119204 Score = 69.9 bits (35), Expect = 6e-09 Identities = 41/43 (95%) Strand = Plus / Minus Query: 119 ccatggcgaccttcgcgaagcccgagaacgcgctcaagagagc 161 |||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 121785 ccatggcgactttcgcgaagcctgagaacgcgctcaagagagc 121743
>ref|NM_117213.2| Arabidopsis thaliana EIF3A AT4G11420 (EIF3A) mRNA, complete cds Length = 3449 Score = 81.8 bits (41), Expect = 2e-12 Identities = 101/121 (83%) Strand = Plus / Plus Query: 176 atgttggacaaaagcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagat 235 |||||||||| || || | ||| || |||||||| |||||||||||||| || ||||||| Sbjct: 183 atgttggacagaaacaagatgctcttcaggcgcttcatgatctcattacttccaagagat 242 Query: 236 acagatcatggcaaaagcctcttgagaagatcatgatgaagtatgtggagctgtgtgttg 295 ||||| | ||||| || || ||||||||||||||| | |||||| | || || ||||||| Sbjct: 243 acagagcttggcagaaaccgcttgagaagatcatgtttaagtatcttgatctttgtgttg 302 Query: 296 a 296 | Sbjct: 303 a 303
>emb|AL161532.2|ATCHRIV32 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 32 Length = 198788 Score = 81.8 bits (41), Expect = 2e-12 Identities = 101/121 (83%) Strand = Plus / Minus Query: 176 atgttggacaaaagcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagat 235 |||||||||| || || | ||| || |||||||| |||||||||||||| || ||||||| Sbjct: 2828 atgttggacagaaacaagatgctcttcaggcgcttcatgatctcattacttccaagagat 2769 Query: 236 acagatcatggcaaaagcctcttgagaagatcatgatgaagtatgtggagctgtgtgttg 295 ||||| | ||||| || || ||||||||||||||| | |||||| | || || ||||||| Sbjct: 2768 acagagcttggcagaaaccgcttgagaagatcatgtttaagtatcttgatctttgtgttg 2709 Query: 296 a 296 | Sbjct: 2708 a 2708
>emb|AL161531.2|ATCHRIV31 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 31 Length = 198301 Score = 81.8 bits (41), Expect = 2e-12 Identities = 101/121 (83%) Strand = Plus / Minus Query: 176 atgttggacaaaagcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagat 235 |||||||||| || || | ||| || |||||||| |||||||||||||| || ||||||| Sbjct: 196129 atgttggacagaaacaagatgctcttcaggcgcttcatgatctcattacttccaagagat 196070 Query: 236 acagatcatggcaaaagcctcttgagaagatcatgatgaagtatgtggagctgtgtgttg 295 ||||| | ||||| || || ||||||||||||||| | |||||| | || || ||||||| Sbjct: 196069 acagagcttggcagaaaccgcttgagaagatcatgtttaagtatcttgatctttgtgttg 196010 Query: 296 a 296 | Sbjct: 196009 a 196009
>emb|AL050399.1|ATF25E4 Arabidopsis thaliana DNA chromosome 4, BAC clone F25E4 (ESSA project) Length = 80019 Score = 81.8 bits (41), Expect = 2e-12 Identities = 101/121 (83%) Strand = Plus / Minus Query: 176 atgttggacaaaagcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagat 235 |||||||||| || || | ||| || |||||||| |||||||||||||| || ||||||| Sbjct: 24179 atgttggacagaaacaagatgctcttcaggcgcttcatgatctcattacttccaagagat 24120 Query: 236 acagatcatggcaaaagcctcttgagaagatcatgatgaagtatgtggagctgtgtgttg 295 ||||| | ||||| || || ||||||||||||||| | |||||| | || || ||||||| Sbjct: 24119 acagagcttggcagaaaccgcttgagaagatcatgtttaagtatcttgatctttgtgttg 24060 Query: 296 a 296 | Sbjct: 24059 a 24059
>gb|AY057516.1| Arabidopsis thaliana AT4g11420/F25E4_40 mRNA sequence Length = 2033 Score = 81.8 bits (41), Expect = 2e-12 Identities = 101/121 (83%) Strand = Plus / Plus Query: 176 atgttggacaaaagcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagat 235 |||||||||| || || | ||| || |||||||| |||||||||||||| || ||||||| Sbjct: 160 atgttggacagaaacaagatgctcttcaggcgcttcatgatctcattacttccaagagat 219 Query: 236 acagatcatggcaaaagcctcttgagaagatcatgatgaagtatgtggagctgtgtgttg 295 ||||| | ||||| || || ||||||||||||||| | |||||| | || || ||||||| Sbjct: 220 acagagcttggcagaaaccgcttgagaagatcatgtttaagtatcttgatctttgtgttg 279 Query: 296 a 296 | Sbjct: 280 a 280
>gb|AF291711.1|AF291711 Arabidopsis thaliana initiation factor 3a mRNA, complete cds Length = 3310 Score = 81.8 bits (41), Expect = 2e-12 Identities = 101/121 (83%) Strand = Plus / Plus Query: 176 atgttggacaaaagcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagat 235 |||||||||| || || | ||| || |||||||| |||||||||||||| || ||||||| Sbjct: 134 atgttggacagaaacaagatgctcttcaggcgcttcatgatctcattacttccaagagat 193 Query: 236 acagatcatggcaaaagcctcttgagaagatcatgatgaagtatgtggagctgtgtgttg 295 ||||| | ||||| || || ||||||||||||||| | |||||| | || || ||||||| Sbjct: 194 acagagcttggcagaaaccgcttgagaagatcatgtttaagtatcttgatctttgtgttg 253 Query: 296 a 296 | Sbjct: 254 a 254
>emb|X79794.1|NTPNLA35 N.tabacum mRNA pNLA-35 Length = 3256 Score = 77.8 bits (39), Expect = 2e-11 Identities = 129/159 (81%) Strand = Plus / Plus Query: 177 tgttggacaaaagcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagata 236 ||||||||||||||| | |||||||| || || |||||||| ||||| |||| ||| || Sbjct: 100 tgttggacaaaagcaagaagcgctgcaagcacttcatgatcttattacttcaaggaggta 159 Query: 237 cagatcatggcaaaagcctcttgagaagatcatgatgaagtatgtggagctgtgtgttga 296 ||| |||||||||| ||||||| | ||| ||| | |||||||| ||||| |||||||| Sbjct: 160 tagagcatggcaaaaaactcttgaaaggataatgttcaagtatgtagagctatgtgttga 219 Query: 297 tctaaggaagggcagatttgccaaagatggccttattca 335 | || | ||| || |||||||| |||||||| ||||| Sbjct: 220 catgagaagggggaggtttgccaaggatggcctaattca 258
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 185 aaaagcaggctgcgctgcaggcgctg 210 |||||||||||| ||||||||||||| Sbjct: 3187411 aaaagcaggctgtgctgcaggcgctg 3187436
>emb|AL392044.7| Human DNA sequence from clone RP11-195E11 on chromosome 9 Contains the 5' end of a novel gene (MGC21981), three novel genes and a CpG island, complete sequence Length = 167206 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 299 taaggaagggcagatttgccaaaga 323 ||||||||||||||||| ||||||| Sbjct: 65575 taaggaagggcagattttccaaaga 65599
>dbj|AK131255.1| Homo sapiens cDNA FLJ16186 fis, clone BRTHA2007060, moderately similar to EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 10 Length = 3259 Score = 42.1 bits (21), Expect = 1.3 Identities = 87/109 (79%) Strand = Plus / Plus Query: 176 atgttggacaaaagcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagat 235 ||||||| || ||||||| ||| ||||| | || ||||| ||||| || ||||| ||| Sbjct: 161 atgttgggcagaagcaggatgctttgcagactcttcatgacctcatcacctcaaaacgat 220 Query: 236 acagatcatggcaaaagcctcttgagaagatcatgatgaagtatgtgga 284 ||||| ||||||| ||| | ||||| | ||| ||| | ||||||||||| Sbjct: 221 acagagcatggcagaagacacttgaaaggattatgttcaagtatgtgga 269
>gb|DQ282338.1| Uncultured bacterium clone SAF-Int-G9 unnamed integron integrase gene, partial cds Length = 489 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 agaacgcgctcaagagagcgg 163 ||||||||||||||||||||| Sbjct: 314 agaacgcgctcaagagagcgg 334
>gb|DQ282321.1| Uncultured bacterium clone SAF-Int-E2 unnamed integron integrase gene, partial cds Length = 489 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 agaacgcgctcaagagagcgg 163 ||||||||||||||||||||| Sbjct: 314 agaacgcgctcaagagagcgg 334
>gb|AF165139.6| Homo sapiens chromosome 9 clone RP11-44L18 map unmapped, complete sequence Length = 153942 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 299 taaggaagggcagatttgccaaaga 323 ||||||||||||||||| ||||||| Sbjct: 37423 taaggaagggcagattttccaaaga 37399
>ref|XM_756391.1| Ustilago maydis 521 hypothetical protein (UM05337.1) partial mRNA Length = 3624 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 gcaggctgcgctgcaggcgctgca 212 |||||| ||||||||||||||||| Sbjct: 2705 gcaggcggcgctgcaggcgctgca 2682
>emb|AL591030.6| Human DNA sequence from clone RP11-35J1 on chromosome 6 Contains putative novel gene, complete sequence Length = 152361 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 tcattacatcaaagagatac 237 |||||||||||||||||||| Sbjct: 115848 tcattacatcaaagagatac 115829
>emb|AL139232.13| Human DNA sequence from clone RP1-237I15 on chromosome 6 Contains a novel gene, the 5' end of the gene for flavohemoprotein B5+B5R and a CpG island, complete sequence Length = 137659 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 tcattacatcaaagagatac 237 |||||||||||||||||||| Sbjct: 131592 tcattacatcaaagagatac 131573
>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16 Length = 348642 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 cgctgcaggcgctgcatgat 216 |||||||||||||||||||| Sbjct: 175710 cgctgcaggcgctgcatgat 175691
>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16 Length = 346274 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 188 agcaggctgcgctgcaggcgctgc 211 ||||||| |||||||||||||||| Sbjct: 5659 agcaggcggcgctgcaggcgctgc 5682
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 188 agcaggctgcgctgcaggcgctgc 211 ||||||| |||||||||||||||| Sbjct: 269533 agcaggcggcgctgcaggcgctgc 269556
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 cgctgcaggcgctgcatgat 216 |||||||||||||||||||| Sbjct: 341436 cgctgcaggcgctgcatgat 341455
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12 Length = 349672 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 agcaggctgcgctgcaggcgctgc 211 ||||||| |||||||||||||||| Sbjct: 281867 agcaggcggcgctgcaggcgctgc 281844
>emb|BX640413.1| Bordetella pertussis strain Tohama I, complete genome; segment 3/12 Length = 349028 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 cgctgcaggcgctgcatgat 216 |||||||||||||||||||| Sbjct: 242868 cgctgcaggcgctgcatgat 242887
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 gcgctgcaggcgctgcatga 215 |||||||||||||||||||| Sbjct: 4443423 gcgctgcaggcgctgcatga 4443442
>dbj|AB003701.1| Cupriavidus necator gene for D-(-)-3-hydroxybutyrate-oligomer hydrolase, complete cds Length = 3173 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 gcgctgcaggcgctgcatga 215 |||||||||||||||||||| Sbjct: 1576 gcgctgcaggcgctgcatga 1595
>gb|AC016395.5| Homo sapiens chromosome 10 clone RP11-153K11, complete sequence Length = 166869 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 agtatgtggagctgtgtgtt 294 |||||||||||||||||||| Sbjct: 61522 agtatgtggagctgtgtgtt 61541
>gb|AC068127.6| Homo sapiens BAC clone RP11-587O9 from 4, complete sequence Length = 203523 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 tcattacatcaaagagatac 237 |||||||||||||||||||| Sbjct: 18374 tcattacatcaaagagatac 18355
>gb|AC007372.4|AC007372 Homo sapiens chromosome 14 BAC containing gene for type 2 iodothyronine deiodinase (DIO2) gene, complete CDS, complete sequence Length = 154796 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 tgcatgatctcattacatca 228 |||||||||||||||||||| Sbjct: 153418 tgcatgatctcattacatca 153399
>emb|AL049837.4|CNS0000F Human chromosome 14 DNA sequence BAC R-959A22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 168677 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 tgcatgatctcattacatca 228 |||||||||||||||||||| Sbjct: 21734 tgcatgatctcattacatca 21753
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 gcgctgcaggcgctgcatga 215 |||||||||||||||||||| Sbjct: 4445950 gcgctgcaggcgctgcatga 4445969
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 129 cttcgcgaagcccgagaacgcgctcaag 156 |||||||| |||||||||||||| |||| Sbjct: 2949534 cttcgcgatgcccgagaacgcgcccaag 2949561 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,620,102 Number of Sequences: 3902068 Number of extensions: 2620102 Number of successful extensions: 47540 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47255 Number of HSP's gapped (non-prelim): 285 length of query: 390 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 368 effective length of database: 17,147,199,772 effective search space: 6310169516096 effective search space used: 6310169516096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
