ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl25c09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191169.1| Oryza sativa (japonica cultivar-group), predic... 168 1e-38
2dbj|AK101026.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 149 9e-33
4dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic D... 149 9e-33
5dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic D... 149 9e-33
6gb|AC069288.7| Homo sapiens BAC clone RP11-416J17 from 7, comple... 46 0.097
7gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 44 0.38
8gb|AC116573.7| Mus musculus BAC clone RP23-114E15 from chromosom... 42 1.5
9dbj|AK080389.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 42 1.5
10gb|AC130404.8| Homo sapiens 12 BAC RP11-337L12 (Roswell Park Can... 42 1.5
11gb|AC139767.5| Homo sapiens 12 BAC RP11-572N16 (Roswell Park Can... 42 1.5
12gb|BC050848.1| Mus musculus claspin homolog (Xenopus laevis), mR... 42 1.5
13ref|NM_175554.3| Mus musculus claspin homolog (Xenopus laevis) (... 42 1.5
14emb|AL606935.8| Mouse DNA sequence from clone RP23-204N19 on chr... 42 1.5
15gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 6.0
16gb|AC122028.3| Mus musculus BAC clone RP24-394D4 from 2, complet... 40 6.0
17emb|AL031682.4|HS873P14 Human DNA sequence from clone RP5-873P14... 40 6.0
18gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 6.0
19emb|AL954245.1| Pan troglodytes chromosome 22 clone PTB-047B05 m... 40 6.0
20gb|AC108856.20| Mus musculus chromosome 8, clone RP24-355A11, co... 40 6.0
21dbj|AB001523.1| Homo sapiens gene for TMEM1 and PWP2,complete an... 40 6.0
22dbj|AK141685.1| Mus musculus 9 days embryo whole body cDNA, RIKE... 40 6.0
23emb|AL845159.4| Mouse DNA sequence from clone RP23-263O22 on chr... 40 6.0
24dbj|AP001753.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 6.0
25gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 6.0
26gb|AC172879.1| Brassica rapa subsp. pekinensis clone KBrH070I10,... 40 6.0
27emb|AL672251.10| Mouse DNA sequence from clone RP23-16O15 on chr... 40 6.0
28dbj|AP001054.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 6.0 
>ref|NM_191169.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2433

 Score =  168 bits (85), Expect = 1e-38
 Identities = 172/201 (85%)
 Strand = Plus / Plus

                                                                       
Query: 241 cgaggacttccatgcggacgaccggcgtgcggaggtgatagattggctgggcgggctgct 300
           |||||||||| |||||| | | |||||||||||||||||||||||||| |||||| | ||
Sbjct: 24  cgaggacttcgatgcggccaatcggcgtgcggaggtgatagattggctcggcgggttact 83

                                                                       
Query: 301 gccggagttcgatttaccgctggattcttcagacgaggagctgcgggagtaccttatcga 360
           ||||||||||||||| ||| |||||||||| ||||||||||||||||| ||||| ||  |
Sbjct: 84  gccggagttcgatttgccgttggattcttcggacgaggagctgcgggattacctcattaa 143

                                                                       
Query: 361 cggaacggcgctgtgctacactgcggacaagctcatgcctggtgttcttgagggtgtctg 420
           ||||   ||||| |||||   |||||||||||||||||| |||||||| |||||    ||
Sbjct: 144 cggagaagcgctatgctatgttgcggacaagctcatgcccggtgttctggaggggacgtg 203

                                
Query: 421 gggtggctatgcatcagacca 441
           |||||| |||||||| |||||
Sbjct: 204 gggtggttatgcatcggacca 224
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>dbj|AK101026.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150E15, full
           insert sequence
          Length = 3313

 Score =  168 bits (85), Expect = 1e-38
 Identities = 172/201 (85%)
 Strand = Plus / Plus

                                                                       
Query: 241 cgaggacttccatgcggacgaccggcgtgcggaggtgatagattggctgggcgggctgct 300
           |||||||||| |||||| | | |||||||||||||||||||||||||| |||||| | ||
Sbjct: 232 cgaggacttcgatgcggccaatcggcgtgcggaggtgatagattggctcggcgggttact 291

                                                                       
Query: 301 gccggagttcgatttaccgctggattcttcagacgaggagctgcgggagtaccttatcga 360
           ||||||||||||||| ||| |||||||||| ||||||||||||||||| ||||| ||  |
Sbjct: 292 gccggagttcgatttgccgttggattcttcggacgaggagctgcgggattacctcattaa 351

                                                                       
Query: 361 cggaacggcgctgtgctacactgcggacaagctcatgcctggtgttcttgagggtgtctg 420
           ||||   ||||| |||||   |||||||||||||||||| |||||||| |||||    ||
Sbjct: 352 cggagaagcgctatgctatgttgcggacaagctcatgcccggtgttctggaggggacgtg 411

                                
Query: 421 gggtggctatgcatcagacca 441
           |||||| |||||||| |||||
Sbjct: 412 gggtggttatgcatcggacca 432
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  149 bits (75), Expect = 9e-33
 Identities = 132/151 (87%)
 Strand = Plus / Plus

                                                                            
Query: 263      cggcgtgcggaggtgatagattggctgggcgggctgctgccggagttcgatttaccgctg 322
                |||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||| ||
Sbjct: 31093354 cggcgtgcggaggtgatagattggctcggcgggttactgccggagttcgatttgccgttg 31093413

                                                                            
Query: 323      gattcttcagacgaggagctgcgggagtaccttatcgacggaacggcgctgtgctacact 382
                |||||||| ||||||||||||||||| ||||| ||  |||||   ||||| |||||   |
Sbjct: 31093414 gattcttcggacgaggagctgcgggattacctcattaacggagaagcgctatgctatgtt 31093473

                                               
Query: 383      gcggacaagctcatgcctggtgttcttgagg 413
                ||||||||||||||||| |||||||| ||||
Sbjct: 31093474 gcggacaagctcatgcccggtgttctggagg 31093504
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>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0439E07
          Length = 176486

 Score =  149 bits (75), Expect = 9e-33
 Identities = 132/151 (87%)
 Strand = Plus / Plus

                                                                          
Query: 263    cggcgtgcggaggtgatagattggctgggcgggctgctgccggagttcgatttaccgctg 322
              |||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||| ||
Sbjct: 150333 cggcgtgcggaggtgatagattggctcggcgggttactgccggagttcgatttgccgttg 150392

                                                                          
Query: 323    gattcttcagacgaggagctgcgggagtaccttatcgacggaacggcgctgtgctacact 382
              |||||||| ||||||||||||||||| ||||| ||  |||||   ||||| |||||   |
Sbjct: 150393 gattcttcggacgaggagctgcgggattacctcattaacggagaagcgctatgctatgtt 150452

                                             
Query: 383    gcggacaagctcatgcctggtgttcttgagg 413
              ||||||||||||||||| |||||||| ||||
Sbjct: 150453 gcggacaagctcatgcccggtgttctggagg 150483
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>dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0014K08
          Length = 177263

 Score =  149 bits (75), Expect = 9e-33
 Identities = 132/151 (87%)
 Strand = Plus / Plus

                                                                         
Query: 263   cggcgtgcggaggtgatagattggctgggcgggctgctgccggagttcgatttaccgctg 322
             |||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||| ||
Sbjct: 19699 cggcgtgcggaggtgatagattggctcggcgggttactgccggagttcgatttgccgttg 19758

                                                                         
Query: 323   gattcttcagacgaggagctgcgggagtaccttatcgacggaacggcgctgtgctacact 382
             |||||||| ||||||||||||||||| ||||| ||  |||||   ||||| |||||   |
Sbjct: 19759 gattcttcggacgaggagctgcgggattacctcattaacggagaagcgctatgctatgtt 19818

                                            
Query: 383   gcggacaagctcatgcctggtgttcttgagg 413
             ||||||||||||||||| |||||||| ||||
Sbjct: 19819 gcggacaagctcatgcccggtgttctggagg 19849
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>gb|AC069288.7| Homo sapiens BAC clone RP11-416J17 from 7, complete sequence
          Length = 145709

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 183   cggccccgtgcacgctccagccctggtggtgaggc 217
             |||||| | ||||||| ||||||||||||||||||
Sbjct: 85079 cggccctgggcacgctgcagccctggtggtgaggc 85045
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>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 138   atccggcgcctgccccgccgga 159
             ||||||||||||||||||||||
Sbjct: 89659 atccggcgcctgccccgccgga 89638
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>gb|AC116573.7| Mus musculus BAC clone RP23-114E15 from chromosome 6, complete sequence
          Length = 211910

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 319    gctggattcttcagacgaggagctg 343
              ||||||||||||||| |||||||||
Sbjct: 130935 gctggattcttcagaggaggagctg 130911
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>dbj|AK080389.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A630089O11 product:unclassifiable, full
           insert sequence
          Length = 1383

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 319 gctggattcttcagacgaggagctg 343
           ||||||||||||||| |||||||||
Sbjct: 217 gctggattcttcagaggaggagctg 241
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>gb|AC130404.8| Homo sapiens 12 BAC RP11-337L12 (Roswell Park Cancer Institute
           Human BAC Library) complete sequence
          Length = 135653

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 63  gaaaacccaaaccaaaagcccccag 87
           ||||||||||||||||||| |||||
Sbjct: 233 gaaaacccaaaccaaaagcacccag 257
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>gb|AC139767.5| Homo sapiens 12 BAC RP11-572N16 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 11901

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 63   gaaaacccaaaccaaaagcccccag 87
            ||||||||||||||||||| |||||
Sbjct: 1772 gaaaacccaaaccaaaagcacccag 1748
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>gb|BC050848.1| Mus musculus claspin homolog (Xenopus laevis), mRNA (cDNA clone
            MGC:59414 IMAGE:6507692), complete cds
          Length = 4964

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 64   aaaacccaaaccaaaagcccc 84
            |||||||||||||||||||||
Sbjct: 4801 aaaacccaaaccaaaagcccc 4781
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>ref|NM_175554.3| Mus musculus claspin homolog (Xenopus laevis) (Clspn), mRNA
          Length = 4964

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 64   aaaacccaaaccaaaagcccc 84
            |||||||||||||||||||||
Sbjct: 4801 aaaacccaaaccaaaagcccc 4781
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>emb|AL606935.8| Mouse DNA sequence from clone RP23-204N19 on chromosome 4, complete
              sequence
          Length = 213391

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 64     aaaacccaaaccaaaagcccc 84
              |||||||||||||||||||||
Sbjct: 143222 aaaacccaaaccaaaagcccc 143202
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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 40      gagaggggggagcggagcgg 59
               ||||||||||||||||||||
Sbjct: 1542023 gagaggggggagcggagcgg 1542004
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>gb|AC122028.3| Mus musculus BAC clone RP24-394D4 from 2, complete sequence
          Length = 173301

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     aagaaaacccaaaccaaaag 80
              ||||||||||||||||||||
Sbjct: 117493 aagaaaacccaaaccaaaag 117512
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>emb|AL031682.4|HS873P14 Human DNA sequence from clone RP5-873P14 on chromosome 20p12 Contains
             the part of the PAK7 gene for p21(CDKN1A)-activated kinase
             7, STSs and GSSs, complete sequence
          Length = 156306

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 392   ctcatgcctggtgttcttga 411
             ||||||||||||||||||||
Sbjct: 41845 ctcatgcctggtgttcttga 41826
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 232     tggccagttcgaggacttcc 251
               ||||||||||||||||||||
Sbjct: 1211247 tggccagttcgaggacttcc 1211266
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>emb|AL954245.1| Pan troglodytes chromosome 22 clone PTB-047B05 map 22q22.3, complete
             sequence
          Length = 176622

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 63    gaaaacccaaaccaaaagc-ccccagaa 89
             ||||||||||||||||||| ||||||||
Sbjct: 37059 gaaaacccaaaccaaaagctccccagaa 37086
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>gb|AC108856.20| Mus musculus chromosome 8, clone RP24-355A11, complete sequence
          Length = 203330

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 64    aaaacccaaaccaaaagcccccagaact 91
             |||||| |||||||||||||||| ||||
Sbjct: 74638 aaaaccaaaaccaaaagcccccaaaact 74611
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>dbj|AB001523.1| Homo sapiens gene for TMEM1 and PWP2,complete and partial cds
          Length = 122638

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                        
Query: 63   gaaaacccaaaccaaaagc-ccccagaa 89
            ||||||||||||||||||| ||||||||
Sbjct: 7747 gaaaacccaaaccaaaagctccccagaa 7774
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>dbj|AK141685.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:D030022G07
            product:unclassifiable, full insert sequence
          Length = 3417

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 389  aagctcatgcctggtgttct 408
            ||||||||||||||||||||
Sbjct: 1457 aagctcatgcctggtgttct 1476
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>emb|AL845159.4| Mouse DNA sequence from clone RP23-263O22 on chromosome 2, complete
              sequence
          Length = 166493

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     aagaaaacccaaaccaaaag 80
              ||||||||||||||||||||
Sbjct: 149142 aagaaaacccaaaccaaaag 149161
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>dbj|AP001753.1| Homo sapiens genomic DNA, chromosome 21q, section 97/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 63    gaaaacccaaaccaaaagc-ccccagaa 89
             ||||||||||||||||||| ||||||||
Sbjct: 49282 gaaaacccaaaccaaaagctccccagaa 49309
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 97     tccgcctcccgcattgcttc 116
              ||||||||||||||||||||
Sbjct: 656093 tccgcctcccgcattgcttc 656074
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>gb|AC172879.1| Brassica rapa subsp. pekinensis clone KBrH070I10, complete sequence
          Length = 107205

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 59   gcaagaaaacccaaaccaaa 78
            ||||||||||||||||||||
Sbjct: 6401 gcaagaaaacccaaaccaaa 6382
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>emb|AL672251.10| Mouse DNA sequence from clone RP23-16O15 on chromosome 2, complete
             sequence
          Length = 204214

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 389   aagctcatgcctggtgttct 408
             ||||||||||||||||||||
Sbjct: 28841 aagctcatgcctggtgttct 28822
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>dbj|AP001054.1| Homo sapiens genomic DNA, chromosome 21, clone:KB218C10, MX1-D21S171
              region, complete sequence
          Length = 120871

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                          
Query: 63     gaaaacccaaaccaaaagc-ccccagaa 89
              ||||||||||||||||||| ||||||||
Sbjct: 100596 gaaaacccaaaccaaaagctccccagaa 100623


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,989,656
Number of Sequences: 3902068
Number of extensions: 2989656
Number of successful extensions: 55762
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 55595
Number of HSP's gapped (non-prelim): 166
length of query: 443
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 421
effective length of database: 17,147,199,772
effective search space: 7218971104012
effective search space used: 7218971104012
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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