ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl25c06 |
|---|---|
| Clone Library Name | barley_pub |
>NU107_RAT (P52590) Nuclear pore complex protein Nup107 (Nucleoporin Nup107)| (107 kDa nucleoporin) (p105) Length = 926 Score = 34.3 bits (77), Expect = 0.19 Identities = 20/56 (35%), Positives = 26/56 (46%) Frame = +1 Query: 235 STTTMTMMIPHYPSRGRQPAGQPPRSRKAHRQISLMLGALKLRPRITRGMGLMALL 402 +TT + +IP PS RQP P RS H IS + G PR + G + L Sbjct: 44 TTTPRSQIIPRTPSSFRQPFTPPSRSLLRHPDISYIFGTEGRSPRHIQSSGYLGNL 99
>CHSA_EMENI (P30584) Chitin synthase A (EC 2.4.1.16) (Chitin-UDP| acetyl-glucosaminyl transferase A) (Class-II chitin synthase A) Length = 1013 Score = 33.5 bits (75), Expect = 0.32 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Frame = +3 Query: 279 RSSTSRPA-PSKQEGASANITYVRSPKAAASNHQRNGINGASRSPLPLKPQFTNSNPRP 452 R + SRPA P++ + +VR P AAAS ++R ING+ R P ++ S RP Sbjct: 62 RYTASRPASPARPWSPTRAADWVRPPSAAASYYERADINGSPRPGTP-SSRYGGSPRRP 119
>NU107_HUMAN (P57740) Nuclear pore complex protein Nup107 (Nucleoporin Nup107)| (107 kDa nucleoporin) Length = 925 Score = 32.7 bits (73), Expect = 0.55 Identities = 20/56 (35%), Positives = 25/56 (44%) Frame = +1 Query: 235 STTTMTMMIPHYPSRGRQPAGQPPRSRKAHRQISLMLGALKLRPRITRGMGLMALL 402 +TT +IP PS RQP RS IS +LG PR+T+ G L Sbjct: 44 NTTPRNQVIPRTPSSFRQPFTPTSRSLLRQPDISCILGTGGKSPRLTQSSGFFGNL 99
>MTR1L_HUMAN (Q13585) Melatonin-related receptor (G protein-coupled receptor 50)| (H9) Length = 613 Score = 32.3 bits (72), Expect = 0.72 Identities = 13/50 (26%), Positives = 27/50 (54%) Frame = +3 Query: 321 ASANITYVRSPKAAASNHQRNGINGASRSPLPLKPQFTNSNPRPSGYVQP 470 AS+N + +A +H ++ + A+ P P+KP +++ P + Y +P Sbjct: 470 ASSNPKPITGHHVSAGSHSKSAFSAATSHPKPIKPATSHAEPTTADYPKP 519
>H1A_CHITE (P40275) Histone H1A| Length = 232 Score = 32.0 bits (71), Expect = 0.94 Identities = 15/73 (20%), Positives = 30/73 (41%) Frame = +3 Query: 276 KRSSTSRPAPSKQEGASANITYVRSPKAAASNHQRNGINGASRSPLPLKPQFTNSNPRPS 455 K + P P K T + PKAA + + + ++ P KP + P+P Sbjct: 131 KPKKAAAPKPKKAGEKKVKKTIAKKPKAATATKIKKPVAKTTKKPAAAKPAAKKAAPKPK 190 Query: 456 GYVQPNSSVERSQ 494 +P ++ + ++ Sbjct: 191 AAPKPKAAKKETK 203
>UTX_HUMAN (O15550) Ubiquitously transcribed X chromosome tetratricopeptide| repeat protein (Ubiquitously transcribed TPR protein on the X chromosome) Length = 1401 Score = 32.0 bits (71), Expect = 0.94 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +3 Query: 285 STSRPAPSKQEGASAN-ITYVRSPKAAASNHQRNGINGASRSPLPLKPQFTNSNPRPSGY 461 ST+ P+P E + N +T + SP + H NG G S P+K N +PS Sbjct: 824 STATPSPKSTEQTTTNSVTSLNSPHSGL--HTING-EGMEESQSPMKTDLLLVNHKPSPQ 880 Query: 462 VQPNSSV 482 + P+ SV Sbjct: 881 IIPSMSV 887
>STE7_SCHPO (Q10136) Protein ste7| Length = 569 Score = 32.0 bits (71), Expect = 0.94 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 3/76 (3%) Frame = +3 Query: 264 PLSFKRSSTSRPAPSKQEGASANITYVRSPKAAASNHQRNGING---ASRSPLPLKPQFT 434 P+ +K S AP+ + ++ + S A+ ++G++ A P PL T Sbjct: 342 PMLYKFPQRSYTAPNTSFNSQRRMSSITSLPTASFCPVKHGVSPPSLAGNQPSPLSSPLT 401 Query: 435 NSNPRPSGYVQPNSSV 482 NSN PS P+++V Sbjct: 402 NSNVSPSTICSPDNNV 417
>UTX_MOUSE (O70546) Ubiquitously transcribed X chromosome tetratricopeptide| repeat protein (Ubiquitously transcribed TPR protein on the X chromosome) (Fragment) Length = 1333 Score = 31.2 bits (69), Expect = 1.6 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +3 Query: 285 STSRPAPSKQEGASAN-ITYVRSPKAAASNHQRNGINGASRSPLPLKPQFTNSNPRPSGY 461 ST+ P+P E + N +T + SP + H NG G S P+K + RPS Sbjct: 756 STATPSPKSTEQTTTNSVTSLNSPHSGL--HTING-EGMEESQSPIKTDLLLVSHRPSPQ 812 Query: 462 VQPNSSV 482 + P+ SV Sbjct: 813 IIPSMSV 819
>YMT6_YEAST (Q04215) Transposon Ty1 protein A| Length = 440 Score = 30.8 bits (68), Expect = 2.1 Identities = 28/105 (26%), Positives = 42/105 (40%) Frame = +3 Query: 180 FHRASRHRGEAMSVVNPPFYXXXXXXXTPLSFKRSSTSRPAPSKQEGASANITYVRSPKA 359 F R +RHR M+V + S + ST R +PS ++ S T PK+ Sbjct: 323 FLRYARHRCIHMTVADLFSDIHSMYEEQQESKRNKSTHRRSPSDEKKDSRTYTNTTKPKS 382 Query: 360 AASNHQRNGINGASRSPLPLKPQFTNSNPRPSGYVQPNSSVERSQ 494 N Q+ N SR+ N++P P + S+ E Q Sbjct: 383 ITRNSQKPN-NSQSRTARAHNVSTFNNSPGPDNDLIRGSTTEPIQ 426
>H1C_CHITE (P40277) Histone H1C| Length = 221 Score = 30.8 bits (68), Expect = 2.1 Identities = 15/68 (22%), Positives = 28/68 (41%) Frame = +3 Query: 276 KRSSTSRPAPSKQEGASANITYVRSPKAAASNHQRNGINGASRSPLPLKPQFTNSNPRPS 455 K+ + PSK T + PKAA + + + ++ P KP + P+P Sbjct: 125 KKPKKAAAKPSKAGEKKVKKTIAKKPKAATATKIKKPVAKTTKKPAAAKPAAKKAAPKPK 184 Query: 456 GYVQPNSS 479 +P ++ Sbjct: 185 AAPKPKAA 192
>H1B_CHITE (P40276) Histone H1B| Length = 232 Score = 30.8 bits (68), Expect = 2.1 Identities = 15/68 (22%), Positives = 28/68 (41%) Frame = +3 Query: 276 KRSSTSRPAPSKQEGASANITYVRSPKAAASNHQRNGINGASRSPLPLKPQFTNSNPRPS 455 K+ + P K T + PKAAA+ + + ++ P KP + P+P Sbjct: 131 KKPKKAAAKPKKAGEKKVKKTIAKKPKAAAATKIKKPVAKTTKKPAAAKPAAKKAAPKPK 190 Query: 456 GYVQPNSS 479 +P ++ Sbjct: 191 AAPKPKAA 198
>CBP1_CAEEL (P34545) Protein cbp-1| Length = 2056 Score = 30.8 bits (68), Expect = 2.1 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +3 Query: 288 TSRPAPSKQEGASANITYVRSPKAAASNHQRNGINGASRSPLPLKP-QFTNSNPRPSGY 461 T +PAPS G N+ +S + G+NG+ L + P Q +N++PRP Y Sbjct: 64 TPQPAPSNNGGF--NLQPGQSQPQQPPQNMGGGVNGSVLQELLMNPSQTSNNSPRPQAY 120
>YGY5_YEAST (P53071) Hypothetical 19.3 kDa protein in HAP2-ADE5,6 intergenic| region Length = 178 Score = 30.4 bits (67), Expect = 2.7 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%) Frame = +1 Query: 175 VYSIGHPATAGKQCLLSILHSTTTMTMMIPHYPSRG-----RQPAGQPP-RSRKAHRQIS 336 ++++G P TAG L SIL+ T ++ +P PSR R P PP H IS Sbjct: 45 IWALG-PHTAGPLLLFSILNCTPARSVTLPISPSRASISFTRMPLPTPPIEGLHEHLPIS 103 Query: 337 LMLGALKL 360 + G +++ Sbjct: 104 VNDGVMRV 111
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 30.0 bits (66), Expect = 3.6 Identities = 17/64 (26%), Positives = 30/64 (46%) Frame = +3 Query: 297 PAPSKQEGASANITYVRSPKAAASNHQRNGINGASRSPLPLKPQFTNSNPRPSGYVQPNS 476 P P + + + + R A+ S + + SRSP P+ T+S PR + + P++ Sbjct: 333 PPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSA 392 Query: 477 SVER 488 S R Sbjct: 393 SPPR 396
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 30.0 bits (66), Expect = 3.6 Identities = 17/64 (26%), Positives = 30/64 (46%) Frame = +3 Query: 297 PAPSKQEGASANITYVRSPKAAASNHQRNGINGASRSPLPLKPQFTNSNPRPSGYVQPNS 476 P P + + + + R A+ S + + SRSP P+ T+S PR + + P++ Sbjct: 333 PPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSA 392 Query: 477 SVER 488 S R Sbjct: 393 SPPR 396
>LRCH4_HUMAN (O75427) Leucine-rich repeats and calponin homology| domain-containing protein 4 (Leucine-rich neuronal protein) Length = 683 Score = 30.0 bits (66), Expect = 3.6 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 7/55 (12%) Frame = +3 Query: 348 SPKAAASNHQRNGINGA------SRSPLPLKPQFTNSNPRPSGYVQ-PNSSVERS 491 SPK++AS GA S+ PLP+ T PRP G +Q PNS + RS Sbjct: 457 SPKSSASQAGAAAGQGAPAPAPASQEPLPIAGPATAPAPRPLGSIQRPNSFLFRS 511
>YFF9_SCHPO (O14066) Hypothetical serine-rich protein C1687.09 in chromosome I| Length = 1379 Score = 29.6 bits (65), Expect = 4.7 Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%) Frame = +3 Query: 189 ASRHRGEAMSVVNPPFYXXXXXXXTPL-SFKRSSTSRPAPSKQEGASANITYVRSPKAAA 365 AS+ EA S+ F+ TP S K + SKQ S ++ + S A Sbjct: 228 ASKQAAEAQSLREFDFFTP-----TPEPSDKNLEKLKNGASKQASESQSLKNMESLSLAR 282 Query: 366 SNH---QRNGINGASRSPLPLKPQFTNSNPRPSGYVQPNSSVER 488 S+ NGAS+ + P F S P PS + PN ++ER Sbjct: 283 SSPILTSEKLKNGASKQAIE-SPPFRASEPLPSSNIIPNPAMER 325
>DSRAD_MOUSE (Q99MU3) Double-stranded RNA-specific adenosine deaminase (EC| 3.5.4.-) (DRADA) (RNA adenosine deaminase 1) Length = 1178 Score = 29.6 bits (65), Expect = 4.7 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 19/98 (19%) Frame = +3 Query: 228 PPFYXXXXXXXTPLSFKRSSTSRPAPS----KQEGASANITYVRSPKAAAS--------- 368 PP + L KRS+ S PAP+ + S + P A AS Sbjct: 303 PPIWYLTDKKRERLQMKRSTHSAPAPTPTAVPEATRSPSFPACHPPPAGASSSVAASKRV 362 Query: 369 -NHQRNGINGASR-----SPLPLKPQFTNSNPRPSGYV 464 N Q I SR P+ L+P ++ P +GYV Sbjct: 363 ENGQEPAIKHESRHEARPGPMRLRPHAYHNGPSRAGYV 400
>LRCH4_MOUSE (Q921G6) Leucine-rich repeats and calponin homology| domain-containing protein 4 Length = 680 Score = 29.3 bits (64), Expect = 6.1 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 7/73 (9%) Frame = +3 Query: 294 RPAPSKQEGASANITYVRSPKAAASNHQRNGINGA------SRSPLPLKPQFTNSNPRPS 455 R A + S T PK++ + +G GA S+ PLP+ T PRP Sbjct: 439 RAAGAGASAPSTQATCNGPPKSSTTQLGVSGGQGAPTPPPTSQDPLPVSGPVTAPVPRPL 498 Query: 456 GYVQ-PNSSVERS 491 G +Q PNS + RS Sbjct: 499 GSIQRPNSFLFRS 511
>MAML1_HUMAN (Q92585) Mastermind-like protein 1 (Mam-1)| Length = 1016 Score = 29.3 bits (64), Expect = 6.1 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 9/74 (12%) Frame = +3 Query: 279 RSSTSRPAPSK-----QEG---ASANITYVRSPKAAASNHQRNGINGASRSPLPLKPQFT 434 + +T PAP + Q G +S ++ Y A+ S+++++ N S L + P Sbjct: 416 QQATPAPAPGQMSTWQQTGPSHSSLDVPYPMEKPASPSSYKQDFTN----SKLLMMPSVN 471 Query: 435 NSNPRPSG-YVQPN 473 S+PRP G Y+QP+ Sbjct: 472 KSSPRPGGPYLQPS 485
>DLX2B_BRARE (Q98876) Homeobox protein Dlx2b (DLX-5) (Distal-less homeobox| protein 2b) Length = 276 Score = 29.3 bits (64), Expect = 6.1 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 4/51 (7%) Frame = +3 Query: 306 SKQEGASANITYVRSPKAA----ASNHQRNGINGASRSPLPLKPQFTNSNP 446 S G N+ Y SPKA AS++ G GAS SP P +P+ S P Sbjct: 65 SYHPGTVGNVHY--SPKAYDLGYASSYGAYGTYGASSSPTPTEPEKEESEP 113
>VTS1_NEUCR (Q7RZQ3) Protein VTS1| Length = 610 Score = 28.9 bits (63), Expect = 7.9 Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 2/97 (2%) Frame = +3 Query: 195 RHRGEAMSVVNPPFYXXXXXXXTPLSFKRSSTSRPAPSKQEGASANITYVRSPKAAASNH 374 RH G + +N F T + T P PS + N + +P + Sbjct: 202 RHSGLDQTTINTMFPDAVAAIATEKAKFTQQTGNPPPSNRNSLVDNRNSLAAPTVSGPKD 261 Query: 375 QRNGINGASR-SPLPLKPQFTNSNPRPSG-YVQPNSS 479 NG N AS P +++ P G +VQP S Sbjct: 262 DINGQNPASPWGPSDTSRPKSSTGQTPMGQFVQPPPS 298
>VIT2_CHICK (P02845) Vitellogenin-2 precursor (Vitellogenin II) (Major| vitellogenin) [Contains: Lipovitellin-1 (Lipovitellin I) (LVI); Phosvitin (PV); Lipovitellin-2 (Lipovitellin II) (LVII); YGP40] Length = 1850 Score = 28.9 bits (63), Expect = 7.9 Identities = 18/74 (24%), Positives = 36/74 (48%) Frame = +3 Query: 270 SFKRSSTSRPAPSKQEGASANITYVRSPKAAASNHQRNGINGASRSPLPLKPQFTNSNPR 449 S SS+S + SK + ++ + +S + +H +NG+S S + +S+ Sbjct: 1240 SSSSSSSSSSSSSKSSSSRSSSSSSKSSSHHSHSHHSGHLNGSSSSSSSSRSVSHHSHEH 1299 Query: 450 PSGYVQPNSSVERS 491 SG+++ +SS S Sbjct: 1300 HSGHLEDDSSSSSS 1313 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,316,475 Number of Sequences: 219361 Number of extensions: 1091627 Number of successful extensions: 2941 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2801 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2939 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
