ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl25c05 |
|---|---|
| Clone Library Name | barley_pub |
>CSE1_DROME (Q9XZU1) Importin-alpha re-exporter (Cellular apoptosis| susceptibility protein homolog) Length = 975 Score = 55.8 bits (133), Expect = 5e-08 Identities = 36/119 (30%), Positives = 54/119 (45%) Frame = +3 Query: 114 MEVPPEMLDTLAGWFAQTLSPDXXXXXXXXXXXXXXXXTPGFXXXXXXXXSSPRHDLQAR 293 MEV L LAG+ QTLS D + + D+ R Sbjct: 1 MEVTEANLQLLAGYLQQTLSADPNVRRPAEKLLESTELQQNYPILLLNLIDKAQMDMTTR 60 Query: 294 LAASVHFKNLLRRRWPKPADDADDGDHLPPNDCVIIKTHILQLLLTAPPLIQSQLSEAL 470 +A ++ FKN ++R W D +D D + +D IKT I+ L+L +P +Q QLS+A+ Sbjct: 61 VAGAIAFKNYIKRNWAAHLD-SDGPDRIHESDRNTIKTLIVTLMLHSPVALQKQLSDAV 118
>CSE1_ARATH (Q9ZPY7) Importin-alpha re-exporter (Cellular apoptosis| susceptibility protein homolog) Length = 972 Score = 55.5 bits (132), Expect = 7e-08 Identities = 44/119 (36%), Positives = 56/119 (47%) Frame = +3 Query: 114 MEVPPEMLDTLAGWFAQTLSPDXXXXXXXXXXXXXXXXTPGFXXXXXXXXSSPRHDLQAR 293 ME E L L+ F TLSP + + P D Q R Sbjct: 1 MEWNRETLVFLSQCFLNTLSPIPEPRRTAERALSDAADQANYGLAVLRLVAEPAIDEQTR 60 Query: 294 LAASVHFKNLLRRRWPKPADDADDGDHLPPNDCVIIKTHILQLLLTAPPLIQSQLSEAL 470 AA+V+FKN LR RW PA D+ + ++ IKT I+ L+L+A P IQSQLSEAL Sbjct: 61 HAAAVNFKNHLRSRW-HPAGDSGISP-IVDSEKEQIKTLIVSLMLSASPRIQSQLSEAL 117
>CSE1_YEAST (P33307) Importin alpha re-exporter (Chromosome segregation protein| CSE1) Length = 960 Score = 47.0 bits (110), Expect = 2e-05 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Frame = +3 Query: 234 GFXXXXXXXXSSPRHDLQARLAASVHFKNLLRRRWPKPADDADDGDH-LPPNDCVIIKTH 410 GF +S L RLA ++ FKN ++R+W ++G+H LP N+ +IK Sbjct: 35 GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVD-----ENGNHLLPANNVELIKKE 89 Query: 411 ILQLLLTAPPLIQSQLSEAL 470 I+ L+++ P +Q Q+ EA+ Sbjct: 90 IVPLMISLPNNLQVQIGEAI 109
>CSE1_MOUSE (Q9ERK4) Importin-alpha re-exporter (Chromosome segregation 1-like| protein) (Cellular apoptosis susceptibility protein) Length = 971 Score = 45.1 bits (105), Expect = 9e-05 Identities = 32/119 (26%), Positives = 53/119 (44%) Frame = +3 Query: 114 MEVPPEMLDTLAGWFAQTLSPDXXXXXXXXXXXXXXXXTPGFXXXXXXXXSSPRHDLQAR 293 ME+ L TL + +TL PD + + ++ + Sbjct: 1 MELSDANLQTLTEYLKKTLDPDPAIRRPAEKFLESVEGNQNYPLLLLTLLEKSQDNV-IK 59 Query: 294 LAASVHFKNLLRRRWPKPADDADDGDHLPPNDCVIIKTHILQLLLTAPPLIQSQLSEAL 470 + ASV FKN ++R W D+ + + D V IK +I+ L+L++P IQ QLS+A+ Sbjct: 60 VCASVTFKNYIKRNWRIVEDEP---NKICEADRVAIKANIVHLMLSSPEQIQKQLSDAI 115
>CSE1_HUMAN (P55060) Importin-alpha re-exporter (Chromosome segregation 1-like| protein) (Cellular apoptosis susceptibility protein) Length = 971 Score = 45.1 bits (105), Expect = 9e-05 Identities = 32/119 (26%), Positives = 53/119 (44%) Frame = +3 Query: 114 MEVPPEMLDTLAGWFAQTLSPDXXXXXXXXXXXXXXXXTPGFXXXXXXXXSSPRHDLQAR 293 ME+ L TL + +TL PD + + ++ + Sbjct: 1 MELSDANLQTLTEYLKKTLDPDPAIRRPAEKFLESVEGNQNYPLLLLTLLEKSQDNV-IK 59 Query: 294 LAASVHFKNLLRRRWPKPADDADDGDHLPPNDCVIIKTHILQLLLTAPPLIQSQLSEAL 470 + ASV FKN ++R W D+ + + D V IK +I+ L+L++P IQ QLS+A+ Sbjct: 60 VCASVTFKNYIKRNWRIVEDEP---NKICEADRVAIKANIVHLMLSSPEQIQKQLSDAI 115
>CSE1_SCHPO (O13671) Importin-alpha re-exporter (Cellular apoptosis| susceptibility protein homolog) Length = 967 Score = 42.7 bits (99), Expect = 5e-04 Identities = 23/66 (34%), Positives = 41/66 (62%), Gaps = 2/66 (3%) Frame = +3 Query: 279 DLQARLAASVHFKNLLRRRWPKPADDADDGDHLPPNDCV--IIKTHILQLLLTAPPLIQS 452 D+ +LAAS++FKN +++ W D+++G + +D V +IK I+ L+L + +IQ Sbjct: 48 DINIKLAASLYFKNYIKKHW-----DSEEGASIRISDEVAELIKREIINLMLKSTTIIQV 102 Query: 453 QLSEAL 470 QL E + Sbjct: 103 QLGEVI 108
>CSE1_PAGMA (Q9PTU3) Importin-alpha re-exporter (Chromosome segregation 1-like| protein) (Cellular apoptosis susceptibility protein) Length = 971 Score = 41.2 bits (95), Expect = 0.001 Identities = 30/119 (25%), Positives = 51/119 (42%) Frame = +3 Query: 114 MEVPPEMLDTLAGWFAQTLSPDXXXXXXXXXXXXXXXXTPGFXXXXXXXXSSPRHDLQAR 293 ME+ L TL + + L PD + + ++ R Sbjct: 1 MELNDANLQTLTEFLRKALDPDPTVRRPAEKFLESVEGNQNYPLLLLTLLEKSQDNV-IR 59 Query: 294 LAASVHFKNLLRRRWPKPADDADDGDHLPPNDCVIIKTHILQLLLTAPPLIQSQLSEAL 470 + A+V FKN ++R W D+ + + D IK +I+ L+L++P IQ QLS+A+ Sbjct: 60 VCAAVTFKNYIKRNWRVIEDEP---NKVSDPDRTAIKANIVNLMLSSPEQIQKQLSDAI 115
>IPO7_MOUSE (Q9EPL8) Importin-7 (Imp7) (Ran-binding protein 7) (RanBP7)| Length = 1038 Score = 35.4 bits (80), Expect = 0.074 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Frame = +3 Query: 267 SPRHDLQARLAASVHFKNLLRRRWPKPADDADDGD----HLPPNDCVIIKTHILQLLLTA 434 S + DL R A ++ KN++ + WP +A GD +P D I+ +I++ ++ + Sbjct: 45 SEQLDLPVRQAGVIYLKNMITQYWPD--REATPGDIAPYTIPEEDRHCIRENIVEAIIHS 102 Query: 435 PPLIQSQLSEAL 470 P LI+ QL+ + Sbjct: 103 PELIRVQLTTCI 114
>IPO7_HUMAN (O95373) Importin-7 (Imp7) (Ran-binding protein 7) (RanBP7)| Length = 1038 Score = 33.5 bits (75), Expect = 0.28 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 4/72 (5%) Frame = +3 Query: 267 SPRHDLQARLAASVHFKNLLRRRWPKPADDADDGD----HLPPNDCVIIKTHILQLLLTA 434 S + DL R A ++ KN++ + WP + GD +P D I+ +I++ ++ + Sbjct: 45 SEQLDLPVRQAGVIYLKNMITQYWPD--RETAPGDISPYTIPEEDRHCIRENIVEAIIHS 102 Query: 435 PPLIQSQLSEAL 470 P LI+ QL+ + Sbjct: 103 PELIRVQLTTCI 114
>IPO8_HUMAN (O15397) Importin-8 (Imp8) (Ran-binding protein 8) (RanBP8)| Length = 1037 Score = 33.1 bits (74), Expect = 0.37 Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 3/67 (4%) Frame = +3 Query: 279 DLQARLAASVHFKNLLRRRWP---KPADDADDGDHLPPNDCVIIKTHILQLLLTAPPLIQ 449 + R AA+++ KN++ + WP P +A ++ ND I+ +I++ ++ +P L++ Sbjct: 49 EFPVRQAAAIYLKNMVTQYWPDREPPPGEAIFPFNIHENDRQRIRDNIVEGIIRSPDLVR 108 Query: 450 SQLSEAL 470 QL+ L Sbjct: 109 VQLTMCL 115
>IPO8_MOUSE (Q7TMY7) Importin-8 (Imp8) (Ran-binding protein 8) (RanBP8)| Length = 1010 Score = 31.6 bits (70), Expect = 1.1 Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Frame = +3 Query: 279 DLQARLAASVHFKNLLRRRWP---KPADDADDGDHLPPNDCVIIKTHILQLLLTAPPLIQ 449 + R AA+++ KN++ + WP P + ++ ND I+ +I++ ++ +P L++ Sbjct: 49 EFPVRQAAAIYLKNMVTQYWPDREPPPGEVIFPFNIHENDRQQIRDNIVEGIIRSPDLVR 108 Query: 450 SQLSEAL 470 QL+ L Sbjct: 109 VQLTMCL 115
>ATKB_XANCP (Q8PCM1) Potassium-transporting ATPase B chain (EC 3.6.3.12)| (Potassium-translocating ATPase B chain) (ATP phosphohydrolase [potassium-transporting] B chain) (Potassium-binding and translocating subunit B) Length = 682 Score = 30.4 bits (67), Expect = 2.4 Identities = 18/69 (26%), Positives = 29/69 (42%) Frame = -3 Query: 436 GAVSRSWRMCVLMMTQSLGGRWSPSSASSAGLGQRRRRRFLKWTEAARRAWRSWRGEEAR 257 G W + ++ L G ++ + A + G GQ R + ARR + G E R Sbjct: 64 GNAGFGWAVTAILFVTVLFGNFAEAIAEARGRGQAASLRRARKDLVARRVETALGGRETR 123 Query: 256 PRSASAKPG 230 +A +PG Sbjct: 124 VPAAELRPG 132
>ATKB_XANAC (Q8PPC9) Potassium-transporting ATPase B chain (EC 3.6.3.12)| (Potassium-translocating ATPase B chain) (ATP phosphohydrolase [potassium-transporting] B chain) (Potassium-binding and translocating subunit B) Length = 682 Score = 30.0 bits (66), Expect = 3.1 Identities = 17/63 (26%), Positives = 28/63 (44%) Frame = -3 Query: 418 WRMCVLMMTQSLGGRWSPSSASSAGLGQRRRRRFLKWTEAARRAWRSWRGEEARPRSASA 239 W + ++ L G ++ + A + G GQ R + ARR + G E R +A Sbjct: 70 WAVTAILFVTVLFGNFAEAIAEARGRGQAASLRRARKDLVARRVETALGGRETRVPAAEL 129 Query: 238 KPG 230 +PG Sbjct: 130 RPG 132
>GUN3_BACSU (P23549) Endoglucanase precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Carboxymethyl-cellulase) (CMCASE) (Cellulase) Length = 499 Score = 29.6 bits (65), Expect = 4.1 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = -3 Query: 373 WSPSSAS-SAGLGQRRRRRFLKWTEAARRAWRSWRGEEARPRSASAKPG 230 W S AS + G+ + R +LK+ ++ +W +W + + S++ KPG Sbjct: 258 WGTSDASGNGGVFLDQSREWLKYLDSKTISWVNWNLSDKQESSSALKPG 306
>GUN2_BACSU (P10475) Endoglucanase precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Carboxymethyl-cellulase) (CMCASE) (Cellulase) Length = 499 Score = 29.6 bits (65), Expect = 4.1 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = -3 Query: 373 WSPSSAS-SAGLGQRRRRRFLKWTEAARRAWRSWRGEEARPRSASAKPG 230 W S AS + G+ + R +LK+ ++ +W +W + + S++ KPG Sbjct: 258 WGTSDASGNGGVFLDQSREWLKYLDSKTISWVNWNLSDKQESSSALKPG 306
>NMD5_YEAST (P46970) Nonsense-mediated mRNA decay protein 5| Length = 1048 Score = 29.3 bits (64), Expect = 5.3 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 3/95 (3%) Frame = +3 Query: 156 FAQTLSPDXXXXXXXXXXXXXXXXTPGFXXXXXXXXSSPRHDLQARLAASVHFKNLLRRR 335 FA TL + PGF ++ +L+AS++FKN + Sbjct: 10 FACTLDHNAAVRTNAETHLKNASKVPGFLGACLDIIAADEVPENIKLSASLYFKNKITYG 69 Query: 336 WPKPADDADD---GDHLPPNDCVIIKTHILQLLLT 431 W A + H+ P++ ++K +++ +++ Sbjct: 70 WSAGARQGSNELLDSHVDPDEKPVVKDMLIKTMVS 104 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.137 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,528,509 Number of Sequences: 219361 Number of extensions: 485319 Number of successful extensions: 1995 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1950 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1992 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
