ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl25b02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190278.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2883 Score = 50.1 bits (25), Expect = 0.004 Identities = 37/41 (90%) Strand = Plus / Plus Query: 241 gcgaggaggcagctgcaccagcccttcgtgccggaccagtc 281 ||||||||||||||||||||||| ||| | ||||| ||||| Sbjct: 94 gcgaggaggcagctgcaccagccgttcttcccggatcagtc 134
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 50.1 bits (25), Expect = 0.004 Identities = 37/41 (90%) Strand = Plus / Minus Query: 241 gcgaggaggcagctgcaccagcccttcgtgccggaccagtc 281 ||||||||||||||||||||||| ||| | ||||| ||||| Sbjct: 39010961 gcgaggaggcagctgcaccagccgttcttcccggatcagtc 39010921 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 205 ctcgcctcctcctcctcgcgcgccgc 230 ||||||||||||||||| |||||||| Sbjct: 14979873 ctcgcctcctcctcctctcgcgccgc 14979848 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Minus Query: 213 ctcctcctcgcgcgccgcggcgtcc 237 ||||||| ||||||||||||||||| Sbjct: 39292445 ctcctccccgcgcgccgcggcgtcc 39292421
>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0674H09 Length = 142955 Score = 50.1 bits (25), Expect = 0.004 Identities = 37/41 (90%) Strand = Plus / Minus Query: 241 gcgaggaggcagctgcaccagcccttcgtgccggaccagtc 281 ||||||||||||||||||||||| ||| | ||||| ||||| Sbjct: 84594 gcgaggaggcagctgcaccagccgttcttcccggatcagtc 84554
>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506A10 Length = 145265 Score = 50.1 bits (25), Expect = 0.004 Identities = 37/41 (90%) Strand = Plus / Minus Query: 241 gcgaggaggcagctgcaccagcccttcgtgccggaccagtc 281 ||||||||||||||||||||||| ||| | ||||| ||||| Sbjct: 28941 gcgaggaggcagctgcaccagccgttcttcccggatcagtc 28901
>gb|AC137596.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBb0031H05, complete sequence Length = 141200 Score = 46.1 bits (23), Expect = 0.061 Identities = 23/23 (100%) Strand = Plus / Minus Query: 205 ctcgcctcctcctcctcgcgcgc 227 ||||||||||||||||||||||| Sbjct: 32919 ctcgcctcctcctcctcgcgcgc 32897
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 46.1 bits (23), Expect = 0.061 Identities = 23/23 (100%) Strand = Plus / Minus Query: 205 ctcgcctcctcctcctcgcgcgc 227 ||||||||||||||||||||||| Sbjct: 21576293 ctcgcctcctcctcctcgcgcgc 21576271 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 211 tcctcctcctcgcgcgccgcggcgtc 236 ||||| |||||||||||||||||||| Sbjct: 16431810 tcctcgtcctcgcgcgccgcggcgtc 16431785
>dbj|AP005742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0489D11 Length = 150757 Score = 46.1 bits (23), Expect = 0.061 Identities = 23/23 (100%) Strand = Plus / Minus Query: 205 ctcgcctcctcctcctcgcgcgc 227 ||||||||||||||||||||||| Sbjct: 137903 ctcgcctcctcctcctcgcgcgc 137881
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 170 tgctgccgctgctcaccgcactgctg 195 ||||||||||||||||||||| |||| Sbjct: 156336 tgctgccgctgctcaccgcacggctg 156311
>ref|NM_186263.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1254 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 209 cctcctcctcctcgcgcgccgcggcg 234 |||||||||||||||||| ||||||| Sbjct: 502 cctcctcctcctcgcgcggcgcggcg 477
>gb|AY023089.1| Oryza sativa microsatellite MRG5414 containing (GAG)X8, genomic sequence Length = 224 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 209 cctcctcctcctcgcgcgccgcggcg 234 |||||||||||||||||| ||||||| Sbjct: 113 cctcctcctcctcgcgcggcgcggcg 88
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 186 cgcactgctgccgatcctgctc 207 |||||||||||||||||||||| Sbjct: 944762 cgcactgctgccgatcctgctc 944741
>gb|DQ351275.1| Streptomyces sp. NRRL 30748 meridamycin biosynthetic gene cluster and flanking regions Length = 116831 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 163 cgggggctgctgccgctgctcaccgc 188 ||||||||||||| |||||||||||| Sbjct: 4129 cgggggctgctgcggctgctcaccgc 4104
>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence Length = 139999 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Plus Query: 207 cgcctcctcctcctcgcgcgccgcgg 232 ||||||||||||||||| |||||||| Sbjct: 80856 cgcctcctcctcctcgctcgccgcgg 80881
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 44.1 bits (22), Expect = 0.24 Identities = 28/30 (93%) Strand = Plus / Minus Query: 179 tgctcaccgcactgctgccgatcctgctcg 208 |||| ||||||||||||||||| ||||||| Sbjct: 976061 tgctgaccgcactgctgccgatactgctcg 976032
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Plus Query: 207 cgcctcctcctcctcgcgcgccgcgg 232 ||||||||||||||||| |||||||| Sbjct: 22626187 cgcctcctcctcctcgctcgccgcgg 22626212 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 tcgcctcctcctcctcgcgcgccgc 230 |||||||||||||||| |||||||| Sbjct: 15129819 tcgcctcctcctcctcccgcgccgc 15129843 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 tgccgatcctgctcgcctcc 213 |||||||||||||||||||| Sbjct: 5297104 tgccgatcctgctcgcctcc 5297085
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 209 cctcctcctcctcgcgcgccgcggcg 234 |||||||||||||||||| ||||||| Sbjct: 2240006 cctcctcctcctcgcgcggcgcggcg 2239981 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 203 tgctcgcctcctcctcctcgc 223 ||||||||||||||||||||| Sbjct: 23798270 tgctcgcctcctcctcctcgc 23798250 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 ctgctcgcctcctcctcctcg 222 ||||||||||||||||||||| Sbjct: 8363851 ctgctcgcctcctcctcctcg 8363831 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 cgcctcctcctcctcgcgcgccgc 230 ||||||||||||||| |||||||| Sbjct: 22006042 cgcctcctcctcctcccgcgccgc 22006065
>dbj|AP008247.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0784G04 Length = 157458 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 205 ctcgcctcctcctcctcgcgcgccgc 230 ||||||||||||||||| |||||||| Sbjct: 17164 ctcgcctcctcctcctctcgcgccgc 17139
>dbj|AP008246.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1642C07 Length = 206004 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 205 ctcgcctcctcctcctcgcgcgccgc 230 ||||||||||||||||| |||||||| Sbjct: 203091 ctcgcctcctcctcctctcgcgccgc 203066
>dbj|AP006530.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1329D01 Length = 141938 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 205 ctcgcctcctcctcctcgcgcgccgc 230 ||||||||||||||||| |||||||| Sbjct: 6120 ctcgcctcctcctcctctcgcgccgc 6095
>dbj|AP005419.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0046G12 Length = 189391 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 211 tcctcctcctcgcgcgccgcggcgtc 236 ||||| |||||||||||||||||||| Sbjct: 120357 tcctcgtcctcgcgcgccgcggcgtc 120332
>dbj|AK119785.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-F07, full insert sequence Length = 1397 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Plus Query: 205 ctcgcctcctcctcctcgcgcgccgc 230 ||||||||||||||||| |||||||| Sbjct: 210 ctcgcctcctcctcctctcgcgccgc 235
>dbj|AP004010.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1351_C05 Length = 112465 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 209 cctcctcctcctcgcgcgccgcggcg 234 |||||||||||||||||| ||||||| Sbjct: 107908 cctcctcctcctcgcgcggcgcggcg 107883
>dbj|AK070151.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044N16, full insert sequence Length = 1016 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Plus Query: 207 cgcctcctcctcctcgcgcgccgcgg 232 ||||||||||||||||| |||||||| Sbjct: 28 cgcctcctcctcctcgctcgccgcgg 53
>dbj|AK068771.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162J02, full insert sequence Length = 1032 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Plus Query: 207 cgcctcctcctcctcgcgcgccgcgg 232 ||||||||||||||||| |||||||| Sbjct: 76 cgcctcctcctcctcgctcgccgcgg 101
>dbj|AK068655.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158J05, full insert sequence Length = 1378 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Plus Query: 205 ctcgcctcctcctcctcgcgcgccgc 230 ||||||||||||||||| |||||||| Sbjct: 190 ctcgcctcctcctcctctcgcgccgc 215
>dbj|AP003824.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1343_B12 Length = 121362 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 209 cctcctcctcctcgcgcgccgcggcg 234 |||||||||||||||||| ||||||| Sbjct: 13705 cctcctcctcctcgcgcggcgcggcg 13680
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Plus Query: 207 cgcctcctcctcctcgcgcgccgcgg 232 ||||||||||||||||| |||||||| Sbjct: 22638655 cgcctcctcctcctcgctcgccgcgg 22638680 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 tcgcctcctcctcctcgcgcgccgc 230 |||||||||||||||| |||||||| Sbjct: 15138060 tcgcctcctcctcctcccgcgccgc 15138084 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 tgccgatcctgctcgcctcc 213 |||||||||||||||||||| Sbjct: 5297891 tgccgatcctgctcgcctcc 5297872
>ref|NM_196669.1| Oryza sativa (japonica cultivar-group) putative nucleolar protein (OSJNBb0040I11.5), mRNA Length = 2658 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Minus Query: 206 tcgcctcctcctcctcgcgcgccgc 230 |||||||||||||||| |||||||| Sbjct: 379 tcgcctcctcctcctcccgcgccgc 355
>ref|NM_190322.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1233 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Plus Query: 213 ctcctcctcgcgcgccgcggcgtcc 237 ||||||| ||||||||||||||||| Sbjct: 357 ctcctccccgcgcgccgcggcgtcc 381
>ref|NM_187025.1| Oryza sativa (japonica cultivar-group), mRNA Length = 756 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 tgctcgcctcctcctcctcgc 223 ||||||||||||||||||||| Sbjct: 491 tgctcgcctcctcctcctcgc 511
>ref|NM_186848.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1335 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 202 ctgctcgcctcctcctcctcg 222 ||||||||||||||||||||| Sbjct: 20 ctgctcgcctcctcctcctcg 40
>gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0035J16, complete sequence Length = 170233 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Minus Query: 157 cggcggcgggggctgctgccgctgc 181 ||||||||||||||||||| ||||| Sbjct: 92283 cggcggcgggggctgctgcggctgc 92259
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 168 gctgctgccgctgctcaccgc 188 ||||||||||||||||||||| Sbjct: 24535 gctgctgccgctgctcaccgc 24515
>ref|XM_543623.2| PREDICTED: Canis familiaris similar to single-strand selective monofunctional uracil DNA glycosylase (LOC486497), mRNA Length = 1098 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 165 ggggctgctgccgctgctcac 185 ||||||||||||||||||||| Sbjct: 912 ggggctgctgccgctgctcac 932
>ref|XM_386840.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG06664.1) partial mRNA Length = 1254 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 gctcaccgcactgctgccgat 200 ||||||||||||||||||||| Sbjct: 334 gctcaccgcactgctgccgat 354
>ref|XM_539411.2| PREDICTED: Canis familiaris similar to Frizzled 1 precursor (Frizzled-1) (Fz-1) (hFz1) (FzE1) (LOC482294), mRNA Length = 2928 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 ccggcggcgggggctgctgcc 176 ||||||||||||||||||||| Sbjct: 722 ccggcggcgggggctgctgcc 702
>gb|AC122522.4| Mus musculus BAC clone RP24-486D23 from chromosome 5, complete sequence Length = 186083 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Minus Query: 158 ggcggcgggggctgctgccgctgct 182 |||||||||||||||||| |||||| Sbjct: 62134 ggcggcgggggctgctgctgctgct 62110
>gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete sequence Length = 452156 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 215 cctcctcgcgcgccgcggcgt 235 ||||||||||||||||||||| Sbjct: 322250 cctcctcgcgcgccgcggcgt 322270
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 168 gctgctgccgctgctcaccgc 188 ||||||||||||||||||||| Sbjct: 1383968 gctgctgccgctgctcaccgc 1383948
>dbj|AP003791.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1065G12 Length = 165006 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Minus Query: 213 ctcctcctcgcgcgccgcggcgtcc 237 ||||||| ||||||||||||||||| Sbjct: 94151 ctcctccccgcgcgccgcggcgtcc 94127
>gb|AC159823.2| Mus musculus BAC clone RP23-113F14 from chromosome 12, complete sequence Length = 212532 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 cctgctcgcctcctcctcctc 221 ||||||||||||||||||||| Sbjct: 165989 cctgctcgcctcctcctcctc 166009
>gb|AC159274.2| Mus musculus BAC clone RP23-405C6 from chromosome 12, complete sequence Length = 200974 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 cctgctcgcctcctcctcctc 221 ||||||||||||||||||||| Sbjct: 26066 cctgctcgcctcctcctcctc 26086
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 gctgctgccgctgctcaccgc 188 ||||||||||||||||||||| Sbjct: 1249876 gctgctgccgctgctcaccgc 1249896
>dbj|AK037220.1| Mus musculus 6 days neonate skin cDNA, RIKEN full-length enriched library, clone:A030011D21 product:weakly similar to KIAA0746 PROTEIN (FRAGMENT) [Homo sapiens], full insert sequence Length = 2372 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Minus Query: 158 ggcggcgggggctgctgccgctgct 182 |||||||||||||||||| |||||| Sbjct: 84 ggcggcgggggctgctgctgctgct 60
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 210 ctcctcctcctcgcgcgccgc 230 ||||||||||||||||||||| Sbjct: 28002093 ctcctcctcctcgcgcgccgc 28002113 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 cgcctcctcctcctcgcgcgccgc 230 |||||||||||||||||| ||||| Sbjct: 27903210 cgcctcctcctcctcgcgggccgc 27903233 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 ctgctcgcctcctcctcctc 221 |||||||||||||||||||| Sbjct: 27623727 ctgctcgcctcctcctcctc 27623708
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Minus Query: 157 cggcggcgggggctgctgccgctgc 181 ||||||||||||||||||| ||||| Sbjct: 19388934 cggcggcgggggctgctgcggctgc 19388910
>gb|AC087547.2|AC087547 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0040I11, complete sequence Length = 129420 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 tcgcctcctcctcctcgcgcgccgc 230 |||||||||||||||| |||||||| Sbjct: 38432 tcgcctcctcctcctcccgcgccgc 38456
>gb|AF546142.1|AF546143S2 Kitasatospora sp. CECT 4991 UnbV (unbV), UnbU (unbU), PksE (pksE), and TebC (tebC) genes, complete cds Length = 9390 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 190 ctgctgccgatcctgctcgcc 210 ||||||||||||||||||||| Sbjct: 2382 ctgctgccgatcctgctcgcc 2402
>dbj|AP006757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0551C06 Length = 149829 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Minus Query: 213 ctcctcctcgcgcgccgcggcgtcc 237 ||||||| ||||||||||||||||| Sbjct: 73691 ctcctccccgcgcgccgcggcgtcc 73667
>dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0021G06 Length = 137678 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 ctgctcgcctcctcctcctcg 222 ||||||||||||||||||||| Sbjct: 68949 ctgctcgcctcctcctcctcg 68929
>dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0547F09 Length = 140615 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 210 ctcctcctcctcgcgcgccgc 230 ||||||||||||||||||||| Sbjct: 46912 ctcctcctcctcgcgcgccgc 46932
>dbj|AP005437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1113_E01 Length = 73706 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 203 tgctcgcctcctcctcctcgc 223 ||||||||||||||||||||| Sbjct: 53200 tgctcgcctcctcctcctcgc 53180
>dbj|AK066936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091N21, full insert sequence Length = 3663 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Minus Query: 206 tcgcctcctcctcctcgcgcgccgc 230 |||||||||||||||| |||||||| Sbjct: 459 tcgcctcctcctcctcccgcgccgc 435
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Plus Query: 205 ctcgcctcctcctcctcgcgcgccg 229 |||||||||||| |||||||||||| Sbjct: 550440 ctcgcctcctccccctcgcgcgccg 550464
>dbj|AK122362.1| Mus musculus mRNA for mKIAA0746 protein Length = 4510 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Minus Query: 158 ggcggcgggggctgctgccgctgct 182 |||||||||||||||||| |||||| Sbjct: 220 ggcggcgggggctgctgctgctgct 196
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 215 cctcctcgcgcgccgcggcgt 235 ||||||||||||||||||||| Sbjct: 1698488 cctcctcgcgcgccgcggcgt 1698468
>ref|XM_482578.1| Oryza sativa (japonica cultivar-group), mRNA Length = 675 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 tgctcgcctcctcctcctcg 222 |||||||||||||||||||| Sbjct: 202 tgctcgcctcctcctcctcg 183
>ref|NM_195186.1| Oryza sativa (japonica cultivar-group) putative transcription elongation factor (OSJNBb0022I16.8), mRNA Length = 786 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 tgccgatcctgctcgcctcc 213 |||||||||||||||||||| Sbjct: 322 tgccgatcctgctcgcctcc 303
>ref|XM_465462.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2777 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 cgcctcctcctcctcgcgcgccgc 230 ||||||||||||||| |||||||| Sbjct: 197 cgcctcctcctcctcccgcgccgc 174
>ref|XM_470390.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1892 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 cctcctcctcctcgcgcgcc 228 |||||||||||||||||||| Sbjct: 12 cctcctcctcctcgcgcgcc 31
>ref|XM_470391.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2188 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 cctcctcctcctcgcgcgcc 228 |||||||||||||||||||| Sbjct: 57 cctcctcctcctcgcgcgcc 76
>gb|AC091238.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0022I16, complete sequence Length = 127068 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 tgccgatcctgctcgcctcc 213 |||||||||||||||||||| Sbjct: 60302 tgccgatcctgctcgcctcc 60283
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 cctcctcgcgcgccgcggcg 234 |||||||||||||||||||| Sbjct: 2187932 cctcctcgcgcgccgcggcg 2187913
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 cctcctcctcctcgcgcgcc 228 |||||||||||||||||||| Sbjct: 35207499 cctcctcctcctcgcgcgcc 35207518
>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete sequence Length = 156606 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 cctcctcctcctcgcgcgcc 228 |||||||||||||||||||| Sbjct: 86260 cctcctcctcctcgcgcgcc 86279
>emb|BX914197.15| Zebrafish DNA sequence from clone DKEYP-81F11 in linkage group 11, complete sequence Length = 198600 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 gcggcgggggctgctgccgctgct 182 ||||||||||||||||| |||||| Sbjct: 24765 gcggcgggggctgctgctgctgct 24788
>emb|CR853300.3| Wallaby DNA sequence from clone MEKBa-585D22, complete sequence Length = 165531 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 159 gcggcgggggctgctgccgctgct 182 ||||||| |||||||||||||||| Sbjct: 77553 gcggcggcggctgctgccgctgct 77530
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ctgctgccgctgctcaccgc 188 |||||||||||||||||||| Sbjct: 2027858 ctgctgccgctgctcaccgc 2027877
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 gcggcgtccccggcggcggg 166 |||||||||||||||||||| Sbjct: 2841748 gcggcgtccccggcggcggg 2841767
>emb|BX572605.1| Rhodopseudomonas palustris CGA009 complete genome; segment 13/16 Length = 349746 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 ctgctgccgctgctcaccgc 188 |||||||||||||||||||| Sbjct: 82082 ctgctgccgctgctcaccgc 82063
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29 Length = 310550 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 cggcgtccccggcggcgggg 167 |||||||||||||||||||| Sbjct: 57604 cggcgtccccggcggcgggg 57623
>dbj|AK079941.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530017N12 product:unclassifiable, full insert sequence Length = 1354 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 tcctgctcgcctcctcctcc 219 |||||||||||||||||||| Sbjct: 326 tcctgctcgcctcctcctcc 307
>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome Length = 143461 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 221 cgcgcgccgcggcgtccaccgcga 244 |||||||||||||||||| ||||| Sbjct: 12958 cgcgcgccgcggcgtccagcgcga 12935
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 tgctcgcctcctcctcctcg 222 |||||||||||||||||||| Sbjct: 21198448 tgctcgcctcctcctcctcg 21198429
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 cctcctcctcctcgcgcgcc 228 |||||||||||||||||||| Sbjct: 35297571 cctcctcctcctcgcgcgcc 35297590
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 cgcctcctcctcctcgcgcgccgc 230 ||||||||||||||| |||||||| Sbjct: 15338431 cgcctcctcctcctcccgcgccgc 15338454
>ref|XM_394234.2| PREDICTED: Apis mellifera similar to Muscleblind isoform C (LOC410758), mRNA Length = 1782 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 gcagctgcaccagcccttcgtgcc 272 ||||||||| |||||||||||||| Sbjct: 534 gcagctgcagcagcccttcgtgcc 557
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 3.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 181 ctcaccgcactgctgccgatcctgctcg 208 ||||||||||||||||||| ||||||| Sbjct: 1296561 ctcaccgcactgctgccgaagctgctcg 1296534
>dbj|AP006055.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0778G11 Length = 59211 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 ctgctcgcctcctcctcctc 221 |||||||||||||||||||| Sbjct: 27910 ctgctcgcctcctcctcctc 27891
>dbj|AP003723.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0003H08 Length = 142068 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 cgcctcctcctcctcgcgcgccgc 230 |||||||||||||||||| ||||| Sbjct: 57133 cgcctcctcctcctcgcgggccgc 57156
>dbj|AP004261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0013G11 Length = 151405 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 cgcctcctcctcctcgcgcgccgc 230 ||||||||||||||| |||||||| Sbjct: 98086 cgcctcctcctcctcccgcgccgc 98109
>dbj|AP005650.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0078K05 Length = 162901 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 cgcctcctcctcctcgcgcgccgc 230 ||||||||||||||| |||||||| Sbjct: 9213 cgcctcctcctcctcccgcgccgc 9236
>dbj|AP005696.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0063K04 Length = 158792 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 cgcctcctcctcctcgcgcgccgc 230 ||||||||||||||| |||||||| Sbjct: 149552 cgcctcctcctcctcccgcgccgc 149575
>dbj|AP005159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0016C11 Length = 170723 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 tgctcgcctcctcctcctcg 222 |||||||||||||||||||| Sbjct: 24725 tgctcgcctcctcctcctcg 24706
>emb|AJ438326.1|TAE438326 Triticum aestivum partial mRNA for glucosyltransferase (GbssI gene), clone ugt3i4a Length = 460 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 cgccgcggcgtccaccgcga 244 |||||||||||||||||||| Sbjct: 115 cgccgcggcgtccaccgcga 96
>dbj|AK101296.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033H23, full insert sequence Length = 2777 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 cgcctcctcctcctcgcgcgccgc 230 ||||||||||||||| |||||||| Sbjct: 197 cgcctcctcctcctcccgcgccgc 174
>dbj|AK070185.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023045K20, full insert sequence Length = 2495 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 cgcctcctcctcctcgcgcgccgc 230 ||||||||||||||| |||||||| Sbjct: 83 cgcctcctcctcctcccgcgccgc 60
>emb|AJ875019.1| Streptoalloteichus hindustanus partial apramycin biosynthesis gene cluster, type strain DSM 44523T Length = 39979 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 cgcgcgccgcggcgtccacc 240 |||||||||||||||||||| Sbjct: 32694 cgcgcgccgcggcgtccacc 32713
>emb|AJ010303.1|SHK010303 Suid herpesvirus 1 putative UL47 and UL46 genes and partial gB gene, strain Kaplan Length = 5317 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 221 cgcgcgccgcggcgtccaccgcga 244 |||||||||||||||||| ||||| Sbjct: 1393 cgcgcgccgcggcgtccagcgcga 1370
>emb|AJ845083.2| Streptomyces tenjimariensis istamycin biosynthesis cluster, strain ATCC 31603 Length = 67904 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 tcctcgcgcgccgcggcgtc 236 |||||||||||||||||||| Sbjct: 29708 tcctcgcgcgccgcggcgtc 29689
>emb|AL772347.6| Mouse DNA sequence from clone RP23-160G19 on chromosome 2, complete sequence Length = 184583 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 tcctgctcgcctcctcctcc 219 |||||||||||||||||||| Sbjct: 14520 tcctgctcgcctcctcctcc 14539
>dbj|AB070934.1| Streptomyces avermitilis carotenoid biosynthetic gene cluster Length = 14304 Score = 40.1 bits (20), Expect = 3.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 181 ctcaccgcactgctgccgatcctgctcg 208 ||||||||||||||||||| ||||||| Sbjct: 12496 ctcaccgcactgctgccgaagctgctcg 12469 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,258,480 Number of Sequences: 3902068 Number of extensions: 2258480 Number of successful extensions: 74779 Number of sequences better than 10.0: 92 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72290 Number of HSP's gapped (non-prelim): 2489 length of query: 286 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 264 effective length of database: 17,147,199,772 effective search space: 4526860739808 effective search space used: 4526860739808 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
