Clone Name | bastl25b01 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK119823.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-D06, full insert sequence Length = 3176 Score = 119 bits (60), Expect = 8e-24 Identities = 132/156 (84%) Strand = Plus / Plus Query: 294 tggaccaactacccgccgagctggaactccggcgacccctgcggcgccccctgggacggg 353 ||||| ||||||||| ||||||||||||||||||||||||||||| | |||||||| Sbjct: 236 tggacgaactacccgttgagctggaactccggcgacccctgcggcggcggatgggacggc 295 Query: 354 atcatgtgcaccaacggcagggtcacgtcgttgaggccgtccagcgtcaacatgcagggc 413 ||||||||||||||||||||||| ||| || |||||| ||| ||||||| | ||||||| Sbjct: 296 atcatgtgcaccaacggcagggtgacgacgctgaggctgtcaagcgtcagcctgcaggga 355 Query: 414 acgctcagcgacagcgtcgggcagctcggcgagctc 449 || || ||| |||| ||| ||||||||| ||||| Sbjct: 356 acactgagcagcagcatcgcccagctcggccagctc 391
>gb|AC093952.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1004_E02, complete sequence Length = 127642 Score = 101 bits (51), Expect = 2e-18 Identities = 75/83 (90%) Strand = Plus / Minus Query: 294 tggaccaactacccgccgagctggaactccggcgacccctgcggcgccccctgggacggg 353 ||||| ||||||||| ||||||||||||||||||||||||||||| | |||||||| Sbjct: 40693 tggacgaactacccgttgagctggaactccggcgacccctgcggcggcggatgggacggc 40634 Query: 354 atcatgtgcaccaacggcagggt 376 ||||||||||||||||||||||| Sbjct: 40633 atcatgtgcaccaacggcagggt 40611 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 300 aactacccgccgagctggaactccggcgacccctgcggcgccccctgggacgggatcatg 359 ||||||||| |||||||||||||||||||||||||||||| | |||||||| ||||| Sbjct: 25128 aactacccgtcgagctggaactccggcgacccctgcggcggcgggtgggacggcgtcatg 25069 Query: 360 tgcaccaacggcagggt 376 |||| |||||| ||||| Sbjct: 25068 tgcagcaacgggagggt 25052
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 101 bits (51), Expect = 2e-18 Identities = 75/83 (90%) Strand = Plus / Minus Query: 294 tggaccaactacccgccgagctggaactccggcgacccctgcggcgccccctgggacggg 353 ||||| ||||||||| ||||||||||||||||||||||||||||| | |||||||| Sbjct: 23759872 tggacgaactacccgttgagctggaactccggcgacccctgcggcggcggatgggacggc 23759813 Query: 354 atcatgtgcaccaacggcagggt 376 ||||||||||||||||||||||| Sbjct: 23759812 atcatgtgcaccaacggcagggt 23759790 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 300 aactacccgccgagctggaactccggcgacccctgcggcgccccctgggacgggatcatg 359 ||||||||| |||||||||||||||||||||||||||||| | |||||||| ||||| Sbjct: 23744307 aactacccgtcgagctggaactccggcgacccctgcggcggcgggtgggacggcgtcatg 23744248 Query: 360 tgcaccaacggcagggt 376 |||| |||||| ||||| Sbjct: 23744247 tgcagcaacgggagggt 23744231 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 tggaggcggcgacgcggcgg 191 |||||||||||||||||||| Sbjct: 27664079 tggaggcggcgacgcggcgg 27664060
>gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099O15, complete sequence Length = 137357 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 300 aactacccgccgagctggaactccggcgacccctgcggcgccccctgggacgggatcatg 359 ||||||||| |||||||||||||||||||||||||||||| | |||||||| ||||| Sbjct: 134260 aactacccgtcgagctggaactccggcgacccctgcggcggcgggtgggacggcgtcatg 134201 Query: 360 tgcaccaacggcagggt 376 |||| |||||| ||||| Sbjct: 134200 tgcagcaacgggagggt 134184
>ref|XM_475450.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2730 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Plus Query: 357 atgtgcaccaacggcagggtcacgtcgttgaggccgtccagcgtcaacatgcagggcacg 416 |||||||||||||||||||| ||| || |||||| ||| ||||||| | ||||||| || Sbjct: 1 atgtgcaccaacggcagggtgacgacgctgaggctgtcaagcgtcagcctgcagggaaca 60 Query: 417 ctcagcgacagcgtcgggcagctcggcgagctc 449 || ||| |||| |||| ||||||||| ||||| Sbjct: 61 ctgagcagcagcatcggccagctcggccagctc 93
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 258 gacgatgccgcggcgctccggt 279 |||||||||||||||||||||| Sbjct: 2784907 gacgatgccgcggcgctccggt 2784886
>gb|AF235504.1|AF235504 Streptomyces hygroscopicus var. ascomyceticus FK520 biosynthetic gene cluster, partial sequence Length = 77534 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 427 gcgtcgggcagctcggcgagc 447 ||||||||||||||||||||| Sbjct: 62309 gcgtcgggcagctcggcgagc 62289
>ref|XM_469134.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1566 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 aggcgcaagaagcgcggcgg 110 |||||||||||||||||||| Sbjct: 305 aggcgcaagaagcgcggcgg 324
>gb|AC113536.10| Mus musculus chromosome 17, clone RP23-77L13, complete sequence Length = 153863 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 ttttgccccccacacacaca 30 |||||||||||||||||||| Sbjct: 19861 ttttgccccccacacacaca 19880
>gb|AC007862.7| Trypanosoma brucei chromosome 2 clone RPCI93-10C8, complete sequence Length = 150671 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 ttttgccccccacacacaca 30 |||||||||||||||||||| Sbjct: 70219 ttttgccccccacacacaca 70200
>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence Length = 1193948 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 ttttgccccccacacacaca 30 |||||||||||||||||||| Sbjct: 548623 ttttgccccccacacacaca 548604
>gb|BC101484.1| Homo sapiens arginine vasopressin receptor 2 (nephrogenic diabetes insipidus), mRNA (cDNA clone MGC:126533 IMAGE:8068990), complete cds Length = 1244 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tccggcgacccctgcggcgccccc 344 ||||||| |||||||||||||||| Sbjct: 785 tccggcgtcccctgcggcgccccc 762
>gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B06, complete sequence Length = 139139 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 tggaggcggcgacgcggcgg 191 |||||||||||||||||||| Sbjct: 28637 tggaggcggcgacgcggcgg 28618
>gb|AC148650.1| Pan troglodytes chromosome X clone PTB-044F10 map human ortholog q28, complete sequence Length = 153826 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tccggcgacccctgcggcgccccc 344 ||||||| |||||||||||||||| Sbjct: 89391 tccggcgtcccctgcggcgccccc 89368
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 aggcgcaagaagcgcggcgg 110 |||||||||||||||||||| Sbjct: 25674003 aggcgcaagaagcgcggcgg 25674022
>gb|AC164306.3| Mus musculus BAC clone RP23-190A21 from chromosome 17, complete sequence Length = 206180 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 ttttgccccccacacacaca 30 |||||||||||||||||||| Sbjct: 132804 ttttgccccccacacacaca 132823
>gb|AC137991.3| Oryza sativa chromosome 3 BAC OSJNBa0034D21 genomic sequence, complete sequence Length = 190834 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 aggcgcaagaagcgcggcgg 110 |||||||||||||||||||| Sbjct: 170893 aggcgcaagaagcgcggcgg 170874
>gb|AC139174.3| Oryza sativa chromosome 3 BAC OSJNBb0065L20 genomic sequence, complete sequence Length = 167427 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 aggcgcaagaagcgcggcgg 110 |||||||||||||||||||| Sbjct: 28352 aggcgcaagaagcgcggcgg 28333
>gb|BC033090.1| Homo sapiens arginine vasopressin receptor 2 (nephrogenic diabetes insipidus), mRNA (cDNA clone IMAGE:5019572), with apparent retained intron Length = 1659 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tccggcgacccctgcggcgccccc 344 ||||||| |||||||||||||||| Sbjct: 805 tccggcgtcccctgcggcgccccc 782
>gb|BC015746.1| Homo sapiens arginine vasopressin receptor 2 (nephrogenic diabetes insipidus), mRNA (cDNA clone IMAGE:4908956), with apparent retained intron Length = 1659 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tccggcgacccctgcggcgccccc 344 ||||||| |||||||||||||||| Sbjct: 805 tccggcgtcccctgcggcgccccc 782
>ref|NM_000054.2| Homo sapiens arginine vasopressin receptor 2 (nephrogenic diabetes insipidus) (AVPR2), mRNA Length = 1809 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tccggcgacccctgcggcgccccc 344 ||||||| |||||||||||||||| Sbjct: 992 tccggcgtcccctgcggcgccccc 969
>gb|U52112.2| Homo sapiens chromosome X clone QLL-D9139, Qc-7G12, Qc-7C1, Qc-12B2, Qc-12D5, QLL-A074, Qc-9D3 map q28, complete sequence Length = 181343 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tccggcgacccctgcggcgccccc 344 ||||||| |||||||||||||||| Sbjct: 59200 tccggcgtcccctgcggcgccccc 59177
>gb|AC165282.2| Mus musculus BAC clone RP24-465P22 from chromosome 16, complete sequence Length = 185134 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 ggggctctgccagacaaacc 255 |||||||||||||||||||| Sbjct: 74987 ggggctctgccagacaaacc 74968
>gb|AC159035.2| Pan troglodytes BAC clone CH251-297P8 from chromosome unknown, complete sequence Length = 207834 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tccggcgacccctgcggcgccccc 344 ||||||| |||||||||||||||| Sbjct: 59264 tccggcgtcccctgcggcgccccc 59241
>gb|AY242131.1| Homo sapiens arginine vasopressin receptor 2 (AVPR2) mRNA, complete cds Length = 1116 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tccggcgacccctgcggcgccccc 344 ||||||| |||||||||||||||| Sbjct: 757 tccggcgtcccctgcggcgccccc 734
>emb|BX324224.11| Zebrafish DNA sequence from clone CH211-168H21 in linkage group 13, complete sequence Length = 147168 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 gccccccacacacacagacg 34 |||||||||||||||||||| Sbjct: 27179 gccccccacacacacagacg 27198
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 aggcgcaagaagcgcggcgg 110 |||||||||||||||||||| Sbjct: 25765308 aggcgcaagaagcgcggcgg 25765327
>gb|AF254639.1|AF254639 Danio rerio vitellogenin 3 precursor (vg3) gene, partial cds Length = 3008 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 gaccagaggagccagccagg 73 |||||||||||||||||||| Sbjct: 2169 gaccagaggagccagccagg 2188
>gb|BC041642.1| Homo sapiens, Similar to arginine vasopressin receptor 2 (nephrogenic diabetes insipidus), clone IMAGE:5019146, mRNA Length = 1659 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tccggcgacccctgcggcgccccc 344 ||||||| |||||||||||||||| Sbjct: 805 tccggcgtcccctgcggcgccccc 782
>gb|AF101728.1|AF101728 Homo sapiens truncated vasopressin receptor type 2 mRNA, complete cds Length = 1307 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tccggcgacccctgcggcgccccc 344 ||||||| |||||||||||||||| Sbjct: 789 tccggcgtcccctgcggcgccccc 766
>gb|AF101727.1|AF101727 Homo sapiens vasopressin receptor type 2 mRNA, complete cds Length = 1201 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tccggcgacccctgcggcgccccc 344 ||||||| |||||||||||||||| Sbjct: 789 tccggcgtcccctgcggcgccccc 766
>gb|BC080603.1| Homo sapiens arginine vasopressin receptor 2 (nephrogenic diabetes insipidus), mRNA (cDNA clone IMAGE:5018991) Length = 1659 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tccggcgacccctgcggcgccccc 344 ||||||| |||||||||||||||| Sbjct: 805 tccggcgtcccctgcggcgccccc 782
>dbj|AK100254.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061D21, full insert sequence Length = 1566 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 aggcgcaagaagcgcggcgg 110 |||||||||||||||||||| Sbjct: 305 aggcgcaagaagcgcggcgg 324
>gb|AC116411.7| Mus musculus chromosome 3, clone RP24-485O3, complete sequence Length = 143601 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 tgccccccacacacacagac 33 |||||||||||||||||||| Sbjct: 61963 tgccccccacacacacagac 61982
>gb|BC112181.1| Homo sapiens arginine vasopressin receptor 2 (nephrogenic diabetes insipidus), mRNA (cDNA clone MGC:138386 IMAGE:8327649), complete cds Length = 1244 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tccggcgacccctgcggcgccccc 344 ||||||| |||||||||||||||| Sbjct: 785 tccggcgtcccctgcggcgccccc 762
>gb|AC152941.2| Ornithorhynchus anatinus chromosome UNK clone OABb-24M14, complete sequence Length = 145914 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 tcaggcggcctggcccgcgg 165 |||||||||||||||||||| Sbjct: 112362 tcaggcggcctggcccgcgg 112381
>gb|U04357.1|HSU04357 Homo sapiens arginine vasopressin receptor type II, V2 antidiuretic hormone receptor (AVPR2) gene, complete cds Length = 2083 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tccggcgacccctgcggcgccccc 344 ||||||| |||||||||||||||| Sbjct: 1189 tccggcgtcccctgcggcgccccc 1166
>gb|AF032388.1|AF032388 Homo sapiens vasopressin receptor type 2 mRNA, alternatively spliced, complete cds Length = 1307 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tccggcgacccctgcggcgccccc 344 ||||||| |||||||||||||||| Sbjct: 789 tccggcgtcccctgcggcgccccc 766
>gb|AF030626.1|AF030626 Homo sapiens vasopressin V2 receptor mRNA, complete cds Length = 1201 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tccggcgacccctgcggcgccccc 344 ||||||| |||||||||||||||| Sbjct: 789 tccggcgtcccctgcggcgccccc 766
>gb|U60793.1|GGU60793 Gallus gallus microsatellite DNA Length = 287 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 tgccccccacacacacagac 33 |||||||||||||||||||| Sbjct: 191 tgccccccacacacacagac 210
>emb|Z11687.1|HSADHRMR H.sapiens mRNA for antidiuretic hormone receptor Length = 1616 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tccggcgacccctgcggcgccccc 344 ||||||| |||||||||||||||| Sbjct: 828 tccggcgtcccctgcggcgccccc 805
>gb|L22206.1|HUMV2R Human vasopressin receptor V2 gene, complete cds Length = 2282 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tccggcgacccctgcggcgccccc 344 ||||||| |||||||||||||||| Sbjct: 1353 tccggcgtcccctgcggcgccccc 1330 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,738,467 Number of Sequences: 3902068 Number of extensions: 2738467 Number of successful extensions: 79003 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78709 Number of HSP's gapped (non-prelim): 294 length of query: 454 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 432 effective length of database: 17,147,199,772 effective search space: 7407590301504 effective search space used: 7407590301504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)