>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
          Length = 908

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 18/37 (48%), Positives = 27/37 (72%)
 Frame = +3

Query: 255 QLELYVVRAQDVDPGVXRLALESMRQEIRSATSSMTS 365
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTS
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTS 91

>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
           (Tumor necrosis factor type 1 receptor-associated
           protein 2) (55.11 protein)
          Length = 908

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 18/37 (48%), Positives = 27/37 (72%)
 Frame = +3

Query: 255 QLELYVVRAQDVDPGVXRLALESMRQEIRSATSSMTS 365
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTS
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTS 91

>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome|
           non-ATPase subunit mts4) (19S regulatory cap region of
           26S protease subunit 2)
          Length = 891

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +3

Query: 258 LELYVVRAQDVDPGVXRLALESMRQEIRSATSSMTS 365
           LEL V   QD  P +   +L  +++ IR++TSSMT+
Sbjct: 57  LELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTA 92

>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome|
           non-ATPase subunit 1)
          Length = 992

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +3

Query: 258 LELYVVRAQDVDPGVXRLALESMRQEIRSATSSMTS 365
           LEL V R ++ D  +   +L ++++ I+++TSSMT+
Sbjct: 48  LELLVERLKEDDSSLYEASLNALKESIKNSTSSMTA 83

>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2161

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 17   VASVPLAPRTLASPPAPSPNRIRPA 91
            +A VPLAP    +PP+P+P R   A
Sbjct: 1135 LAQVPLAPPQPGAPPSPAPARFSTA 1159

>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1|
          Length = 883

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = +3

Query: 282 QDVDPGVXRLALESMRQEIRSATSSMTS 365
           Q+ D  + + ALE+M+  I+++TSSMT+
Sbjct: 48  QESDATLYKPALEAMKNSIKTSTSSMTA 75

>BORG5_HUMAN (Q00587) Cdc42 effector protein 1 (Binder of Rho GTPases 5) (Serum|
           protein MSE55)
          Length = 391

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 17  VASVPLAPRTLASPPAPSP 73
           V  V   PR +ASPPAPSP
Sbjct: 89  VRRVGAPPRRMASPPAPSP 107


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,021,539
Number of Sequences: 219361
Number of extensions: 211267
Number of successful extensions: 1377
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)