ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl25a05 |
|---|---|
| Clone Library Name | barley_pub |
>YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6| Length = 278 Score = 32.7 bits (73), Expect = 0.21 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 262 AGGACLHCRGGAHARSPLRGPPGPVGP 342 AGGAC+ C G + G PGP GP Sbjct: 127 AGGACIQCPAGEAGPAGAPGAPGPAGP 153
>YIA_RHISP (P17986) Insertion element ISR1 hypothetical 30.8 kDa protein A| Length = 278 Score = 32.0 bits (71), Expect = 0.37 Identities = 24/77 (31%), Positives = 35/77 (45%) Frame = -2 Query: 387 STQASTVARHASASFWSDGSWRTSERRPCVRTASTMEASSSGWTVLPGCGIRSPTTTRSR 208 S ++T A+H+ + R +RRP V ++T A+S+GW G G R P R R Sbjct: 29 SEVSATSAKHSRVQL--SITVRMRKRRPSVSWSATKSATSAGWAPAAGHGRRVP-IARLR 85 Query: 207 RGLSQLSFTSARKPTAP 157 R + A P P Sbjct: 86 RAPAHRQLLVAIDPLDP 102
>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 31.6 bits (70), Expect = 0.48 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = +1 Query: 208 SAPSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 + PSG D +G+ P G A + G+ + GPPGP GP Sbjct: 1062 AGPSGPVGKDGRSGQPGPVGPAGVRGSQGSQGPAGPPGPPGPPGP 1106
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 30.8 bits (68), Expect = 0.81 Identities = 17/40 (42%), Positives = 18/40 (45%) Frame = +1 Query: 220 GGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVG 339 G + A A G AGGA L G RGPPGP G Sbjct: 108 GNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAG 147 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/17 (70%), Positives = 12/17 (70%) Frame = +1 Query: 292 GAHARSPLRGPPGPVGP 342 GA S RGPPGPVGP Sbjct: 939 GAPGASGDRGPPGPVGP 955 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/43 (34%), Positives = 16/43 (37%) Frame = +1 Query: 214 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 P G AGE G L G + GPPGP GP Sbjct: 538 PKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAEGPPGPAGP 580
>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1459 Score = 30.8 bits (68), Expect = 0.81 Identities = 16/41 (39%), Positives = 19/41 (46%) Frame = +1 Query: 217 SGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVG 339 +G + A A G AGGA + G RGPPGP G Sbjct: 148 AGNFAAQMAGGYDEKAGGAQMGVMQGPMGPMGPRGPPGPAG 188 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/43 (37%), Positives = 17/43 (39%) Frame = +1 Query: 214 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 P G AGE AG L G + GPPGP GP Sbjct: 579 PKGANGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPSGP 621 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/17 (70%), Positives = 12/17 (70%) Frame = +1 Query: 292 GAHARSPLRGPPGPVGP 342 GA S RGPPGPVGP Sbjct: 980 GAPGASGDRGPPGPVGP 996
>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 30.8 bits (68), Expect = 0.81 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = +1 Query: 208 SAPSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 + PSG D +G P G A + G+ + GPPGP GP Sbjct: 1062 AGPSGPIGKDGRSGHPGPVGPAGVRGSQGSQGPAGPPGPPGPPGP 1106
>WSC4_YEAST (P38739) Cell wall integrity and stress response component 4| precursor Length = 605 Score = 30.4 bits (67), Expect = 1.1 Identities = 22/78 (28%), Positives = 36/78 (46%) Frame = -2 Query: 393 TRSTQASTVARHASASFWSDGSWRTSERRPCVRTASTMEASSSGWTVLPGCGIRSPTTTR 214 T +T +++ + + S S S TS + + ST +SSS T I + TT+ Sbjct: 199 TSTTTSTSSSTSTTVSVTSSTSTTTSTTSSTLISTSTSSSSSSTPTTTSSAPISTSTTSS 258 Query: 213 SRRGLSQLSFTSARKPTA 160 + S S TS+ PT+ Sbjct: 259 TSTSTSTTSPTSSSAPTS 276 Score = 27.3 bits (59), Expect = 9.0 Identities = 23/80 (28%), Positives = 38/80 (47%) Frame = -2 Query: 393 TRSTQASTVARHASASFWSDGSWRTSERRPCVRTASTMEASSSGWTVLPGCGIRSPTTTR 214 T ST +ST+ +++S S S T+ + T++T S+S T P S T+ Sbjct: 222 TTSTTSSTLISTSTSS--SSSSTPTTTSSAPISTSTTSSTSTSTSTTSPTSS--SAPTSS 277 Query: 213 SRRGLSQLSFTSARKPTAPA 154 S + +FT+ TAP+ Sbjct: 278 SNTTPTSTTFTTTSPSTAPS 297
>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2157 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Frame = +1 Query: 208 SAPSGGWRADAAAGEHRPAGGACLH---CRGGAHARSPLRGPPGP 333 S+P GG + A RP G + L+ C G + P R PP P Sbjct: 1670 SSPDGGLKGAAEGPPKRPGGSSPLNAVPCEGPPGSEPPRRPPPAP 1714
>PARB_PSEPU (P0A152) Probable chromosome partitioning protein parB| Length = 290 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 6/57 (10%) Frame = +2 Query: 242 QPGSTVQPEELASIVEAVRTHGLLSEVLQDPSDQKLAE------AWRATVDAWVERV 394 QP + PE L + ++R HG++ ++ P E WRAT A ++ + Sbjct: 50 QPRRDMDPEALEELAHSIRNHGVMQPIVVRPIGDNRYEIIAGERRWRATQQAGLDTI 106
>PARB_PSEPK (P0A151) Probable chromosome partitioning protein parB| Length = 290 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 6/57 (10%) Frame = +2 Query: 242 QPGSTVQPEELASIVEAVRTHGLLSEVLQDPSDQKLAE------AWRATVDAWVERV 394 QP + PE L + ++R HG++ ++ P E WRAT A ++ + Sbjct: 50 QPRRDMDPEALEELAHSIRNHGVMQPIVVRPIGDNRYEIIAGERRWRATQQAGLDTI 106
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/43 (37%), Positives = 19/43 (44%) Frame = +1 Query: 214 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 P G A GE GG L G + + +GPPGP GP Sbjct: 582 PKGNDGAPGKNGERGGPGGPGLPGPAGKNGETGPQGPPGPTGP 624 Score = 28.9 bits (63), Expect = 3.1 Identities = 22/50 (44%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Frame = +1 Query: 202 ATSAPSGGWRADAAAGEHRPAGGACL-HCRGGAHARSPL--RGPPGPVGP 342 A AP GG A GE P G A + RGGA P +GP GP GP Sbjct: 666 APGAP-GGKGDSGAPGERGPPGTAGIPGARGGAGPPGPEGGKGPAGPPGP 714
>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor| Length = 1355 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/45 (37%), Positives = 21/45 (46%) Frame = +1 Query: 208 SAPSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 + PSG A AG PAG + GG + + GP GP GP Sbjct: 945 TGPSGLAGAPGPAGSAGPAGKSGNRGEGGPSGPAGITGPSGPRGP 989
>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1419 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/40 (40%), Positives = 18/40 (45%) Frame = +1 Query: 220 GGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVG 339 G + A A G AGGA + G RGPPGP G Sbjct: 109 GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAG 148 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/43 (37%), Positives = 17/43 (39%) Frame = +1 Query: 214 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 P G AGE AG L G + GPPGP GP Sbjct: 539 PKGANGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPSGP 581 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/17 (70%), Positives = 12/17 (70%) Frame = +1 Query: 292 GAHARSPLRGPPGPVGP 342 GA S RGPPGPVGP Sbjct: 940 GAPGASGDRGPPGPVGP 956
>COKA1_HUMAN (Q9P218) Collagen alpha-1(XX) chain precursor| Length = 1329 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/43 (39%), Positives = 18/43 (41%) Frame = +1 Query: 214 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 P G + AG P G GA S RGPPG VGP Sbjct: 1172 PKGMRGLEGTAGLPGPPGPRGFQGMAGARGTSGERGPPGTVGP 1214
>COIA1_MOUSE (P39061) Collagen alpha-1(XVIII) chain precursor [Contains:| Endostatin] Length = 1774 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/82 (26%), Positives = 26/82 (31%), Gaps = 5/82 (6%) Frame = +1 Query: 115 RPPPVTDPSL-----TSDGXXXXXXXXXXXQLA*ATSAPSGGWRADAAAGEHRPAGGACL 279 +PPPVT P L T D A + P G P G Sbjct: 725 QPPPVTSPPLAGGSTTEDPRTEETEEDAAVDSIGAETLPGTGSSGAWDEAIQNPGRGLIK 784 Query: 280 HCRGGAHARSPLRGPPGPVGPK 345 G +GPPGP GP+ Sbjct: 785 GGMKGQKGEPGAQGPPGPAGPQ 806 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = +1 Query: 259 PAGGACLHCRGGAHARSPLRGPPGPVG 339 P G A H + GA RGPPGP G Sbjct: 1207 PDGRALGHPQKGAKGEPGFRGPPGPYG 1233
>LIPA_STRAW (Q82AP7) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)| (Lipoate synthase) (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) Length = 328 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = -1 Query: 235 PLANHHSEQTWLKP-AVVHVREEADGAGHRWLVRGP 131 P HH + W+KP V ++EEA+ G ++ GP Sbjct: 258 PSVRHHPVERWVKPHEFVELKEEAEEIGFSGVMSGP 293
>LIPA_STRCO (Q9S2P2) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)| (Lipoate synthase) (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) Length = 317 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = -1 Query: 235 PLANHHSEQTWLKP-AVVHVREEADGAGHRWLVRGP 131 P HH + W+KP V ++EEA+ G ++ GP Sbjct: 258 PSVRHHPVERWVKPQEFVELKEEAEQIGFSGVMSGP 293
>TNR19_MOUSE (Q9JLL3) Tumor necrosis factor receptor superfamily member 19| precursor (Toxicity and JNK inducer) (TRADE) Length = 416 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/28 (57%), Positives = 18/28 (64%) Frame = -2 Query: 279 EASSSGWTVLPGCGIRSPTTTRSRRGLS 196 EA SS VL GCG+RSPTT + R S Sbjct: 258 EARSSARAVL-GCGLRSPTTLQERNPAS 284
>MYSC_ACACA (P10569) Myosin IC heavy chain| Length = 1168 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/47 (36%), Positives = 18/47 (38%) Frame = +1 Query: 202 ATSAPSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 A P G AG P GG + GGA R PPG GP Sbjct: 1075 APGGPGRGGAPPPGAGRAGPPGGRGMPAPGGAAPRGRGAPPPGAGGP 1121
>MEGF6_MOUSE (Q80V70) Multiple epidermal growth factor-like domains 6 (EGF-like| domain-containing protein 3) (Multiple EGF-like domain protein 3) (Fragment) Length = 656 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%) Frame = +1 Query: 223 GWRADAAAGE-HRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 GW +A A H P G +C H G H PPG GP Sbjct: 251 GWFGEACAQRCHCPPGASCHHVSGECHC------PPGFTGP 285
>EMID1_MOUSE (Q91VF5) EMI domain-containing protein 1 precursor (Protein Emu1)| (Emilin and multimerin domain-containing protein 1) Length = 444 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 2/21 (9%) Frame = +1 Query: 286 RGGAHARSP--LRGPPGPVGP 342 +GG ++SP +RGPPGP GP Sbjct: 208 KGGTDSQSPVRIRGPPGPQGP 228
>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)| Length = 1262 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/43 (37%), Positives = 17/43 (39%) Frame = +1 Query: 214 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 P G A GE P G G + L GPPGP GP Sbjct: 582 PKGNEGAPGKNGERGPGGPPGTPGPAGKNGDVGLPGPPGPAGP 624 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/43 (39%), Positives = 19/43 (44%) Frame = +1 Query: 214 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 P+G A AGE G G+ S RGPPGP GP Sbjct: 906 PAGNNGAPGKAGERGFQGPLGPQGAIGSPGASGARGPPGPAGP 948
>YQ33_CAEEL (Q09233) Putative cuticle collagen C09G5.3| Length = 283 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +1 Query: 235 DAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVG 339 + A +PA G C+ C G RGPPGP G Sbjct: 120 NGGAALDQPADGTCIKCPPGP------RGPPGPQG 148
>COL6_CAEEL (P18831) Cuticle collagen 6 (Protein roller-8)| Length = 329 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/29 (44%), Positives = 14/29 (48%) Frame = +1 Query: 259 PAGGACLHCRGGAHARSPLRGPPGPVGPK 345 PA C+ C GA GP GP GPK Sbjct: 178 PASEPCIICPTGAPGPMGAMGPKGPPGPK 206
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/43 (41%), Positives = 20/43 (46%) Frame = +1 Query: 214 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 PSG A AG P G A GA + L G PGP+GP Sbjct: 1131 PSG---ASGPAGPRGPPGSA------GAPGKDGLNGLPGPIGP 1164
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/43 (41%), Positives = 20/43 (46%) Frame = +1 Query: 214 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 PSG A AG P G A GA + L G PGP+GP Sbjct: 1120 PSG---ASGPAGPRGPPGSA------GAAGKDGLNGLPGPIGP 1153
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 28.5 bits (62), Expect = 4.0 Identities = 23/70 (32%), Positives = 24/70 (34%), Gaps = 25/70 (35%) Frame = +1 Query: 205 TSAPSGGWRADAAAGEHRPAGGA--------CLHC-----------------RGGAHARS 309 T+ PSGG A AA RP GG C C R G R Sbjct: 1581 TAVPSGGGGAAAAGRRDRPGGGGGWGSGPPPCRRCGHRCWLCWWRRGPRPRRRPGLTDRV 1640 Query: 310 PLRGPPGPVG 339 P RG P P G Sbjct: 1641 PPRGGPSPRG 1650
>PHLPP_RAT (Q9WTR8) PH domain leucine-rich repeat protein phosphatase (EC| 3.1.3.16) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory protein) Length = 1696 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = +1 Query: 202 ATSAPSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPV 336 A +A GG D+ P+GG G A +P PPGP+ Sbjct: 24 AAAAAEGGRSPDSVLSAAAPSGGN----GGAAREEAPCEAPPGPL 64
>RL2_CLOPE (Q8XHS6) 50S ribosomal protein L2| Length = 277 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/40 (40%), Positives = 17/40 (42%) Frame = +1 Query: 223 GWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 GWR P C H GG RSP+ G P PV P Sbjct: 215 GWRPTVRGSVMNP----CDHPHGGGEGRSPI-GRPSPVTP 249
>PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing protein| phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat protein phosphatase) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory Length = 1687 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = +1 Query: 202 ATSAPSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPV 336 A +A GG D A P+GG G A +P PPGP+ Sbjct: 23 AAAAAEGGRCPDPALSAAAPSGGN----GGAAREEAPCEAPPGPL 63
>COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Contains:| Endostatin] Length = 1516 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = +1 Query: 259 PAGGACLHCRGGAHARSPLRGPPGPVG 339 P GGA + GA RGPPGP G Sbjct: 951 PDGGALGPAQKGAKGEPGFRGPPGPYG 977 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/41 (41%), Positives = 18/41 (43%) Frame = +1 Query: 223 GWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGPK 345 G R DA R G GG S L GPPGP GP+ Sbjct: 1093 GDRGDAGQKGERGEPG------GGGFFGSSLPGPPGPPGPR 1127
>SGS3_DROYA (P13728) Salivary glue protein Sgs-3 precursor| Length = 263 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/73 (24%), Positives = 33/73 (45%) Frame = -2 Query: 381 QASTVARHASASFWSDGSWRTSERRPCVRTASTMEASSSGWTVLPGCGIRSPTTTRSRRG 202 + +T R + + + T+ RRP R+ +T +++ T R PTTT + Sbjct: 84 RTTTTTRQTTTRPTTTTTTTTTTRRPTTRSTTTRHTTTTTTTT------RRPTTTTTTTR 137 Query: 201 LSQLSFTSARKPT 163 + T+ R+PT Sbjct: 138 RPTTTTTTTRRPT 150
>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain| Length = 1049 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/43 (34%), Positives = 18/43 (41%) Frame = +1 Query: 214 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 P G A GE GG G + + +GPPGP GP Sbjct: 427 PKGNDGAPGKNGERGGPGGPGPQGPAGKNGETGPQGPPGPTGP 469 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +1 Query: 247 GEHRPAGGACLHCRGGAHARSPLRGPPGPVGPK 345 GE PAG + GA + RGPPGP GP+ Sbjct: 909 GETGPAGPS------GAPGPAGSRGPPGPQGPR 935
>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/38 (42%), Positives = 17/38 (44%) Frame = +1 Query: 232 ADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGPK 345 A A G H P G A H G S GP G VGP+ Sbjct: 959 AAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPR 996
>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = +1 Query: 208 SAPSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 + PSG D G+ G A + G+ + GPPGP GP Sbjct: 1056 AGPSGPAGKDGRTGQPGTVGPAGIRGSQGSQGPAGPPGPPGPPGP 1100
>ROL6_CAEEL (P20784) Cuticle collagen rol-6 (Protein roller-6)| Length = 348 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/42 (38%), Positives = 17/42 (40%) Frame = +1 Query: 214 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVG 339 P G DA G+ P G L GGA GPPG G Sbjct: 277 PQGPTGRDAYPGQSGPQGEPGLQGYGGAAGEDGPEGPPGAPG 318
>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor| Length = 1364 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = +1 Query: 208 SAPSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 + PSG D G+ G A + G+ + GPPGP GP Sbjct: 1054 AGPSGPAGKDGRIGQPGAVGPAGIRGSQGSQGPAGPPGPPGPPGP 1098
>CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragments)| Length = 1362 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/43 (41%), Positives = 19/43 (44%) Frame = +1 Query: 214 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 P+GG G PAG A GA RG PGPVGP Sbjct: 684 PAGGAGDRGEGGPAGPAGPA------GARGIPGERGEPGPVGP 720 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/43 (37%), Positives = 19/43 (44%) Frame = +1 Query: 214 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 PSG D G P G A + G+ + GPPGP GP Sbjct: 1056 PSGPPGKDGRNGLPGPIGPAGVRGSHGSQGPAGPPGPPGPPGP 1098
>SYH_SYNPX (Q7U9Q6) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 430 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +2 Query: 254 TVQPEELASIVEAVRTHGLLSEVLQ 328 T++PE AS+V A HGLLS+ Q Sbjct: 78 TLRPEGTASVVRAALQHGLLSQGAQ 102
>CRTI_SYNY3 (P29273) Phytoene dehydrogenase (EC 1.14.99.-) (Phytoene| desaturase) Length = 472 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%) Frame = -1 Query: 283 NGGKLLRLDGAP--RLRHPLANHHSE---QTWLKPAVVHVREEADGAGHRWLVRG 134 NG K+ LDGAP RL PL ++ +E + + + + DG+ +L+RG Sbjct: 201 NGSKMAFLDGAPPERLCQPLVDYITERGGEVHINKPLKEILLNEDGSVKGYLIRG 255
>COLE_LEPMA (P98085) Inner ear-specific collagen precursor (Saccular collagen)| Length = 419 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/43 (37%), Positives = 18/43 (41%) Frame = +1 Query: 214 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 P GG A G P GG + G +RGP GP GP Sbjct: 228 PLGGKGDTGARGPPGPPGGRGMAGLRGEKGLKGVRGPRGPKGP 270
>CO9A3_HUMAN (Q14050) Collagen alpha-3(IX) chain precursor| Length = 684 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/33 (45%), Positives = 15/33 (45%) Frame = +1 Query: 244 AGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 AG P GG L G L GPPGP GP Sbjct: 126 AGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGP 158 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = +1 Query: 235 DAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 D G+ P G A L G LRG PGP+GP Sbjct: 207 DGEKGDPGPPGPAGLPGSVGLQGPRGLRGLPGPLGP 242
>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor| Length = 866 Score = 27.7 bits (60), Expect = 6.9 Identities = 22/80 (27%), Positives = 36/80 (45%) Frame = -2 Query: 387 STQASTVARHASASFWSDGSWRTSERRPCVRTASTMEASSSGWTVLPGCGIRSPTTTRSR 208 STQ+S+ A +S++ + S + T +T +S T P +PTT + Sbjct: 77 STQSSSTAATSSSAPSTASSTTSIPTSTSTETTTTTPTAS---TTTPTTTTAAPTTAATT 133 Query: 207 RGLSQLSFTSARKPTAPAIA 148 ++ + TSA TA A A Sbjct: 134 TAVTTAASTSAETTTATATA 153
>EMID1_HUMAN (Q96A84) EMI domain-containing protein 1 precursor (Protein Emu1)| (Emilin and multimerin domain-containing protein 1) Length = 441 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 2/21 (9%) Frame = +1 Query: 286 RGGAHARSPL--RGPPGPVGP 342 +G A +R P+ RGPPGP GP Sbjct: 208 KGDAGSRGPMGMRGPPGPQGP 228
>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor| Length = 1466 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/43 (34%), Positives = 18/43 (41%) Frame = +1 Query: 214 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 P G A GE GG G + + +GPPGP GP Sbjct: 583 PKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGP 625
>RHG06_HUMAN (O43182) Rho-GTPase-activating protein 6 (Rho-type GTPase-activating| protein RhoGAPX-1) Length = 974 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/78 (24%), Positives = 32/78 (41%) Frame = -2 Query: 333 GSWRTSERRPCVRTASTMEASSSGWTVLPGCGIRSPTTTRSRRGLSQLSFTSARKPTAPA 154 GS R +R P A+++ W P G+ +PT + + T + +A + Sbjct: 872 GSGRDDKRPPPPYPGPGKPAAAAAWIQGPPEGVETPTDQGGQAAEREQQVTQKKLSSANS 931 Query: 153 IAG**GVRDWRRAPDLGW 100 + G +D R D GW Sbjct: 932 LPA--GEQDSPRLGDAGW 947
>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/42 (38%), Positives = 18/42 (42%) Frame = +1 Query: 214 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVG 339 P+G A GE P G L + G GPPGPVG Sbjct: 1189 PTGQPGPSGADGEPGPRGQQGLFGQKGDEGSRGFPGPPGPVG 1230
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/42 (35%), Positives = 18/42 (42%) Frame = +1 Query: 214 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVG 339 P G A GE GG L G + + +GPPGP G Sbjct: 582 PKGNDGAPGKNGERGGPGGPGLPGPAGKNGETGPQGPPGPTG 623
>CO2A1_BOVIN (P02459) Collagen alpha-1(II) chain precursor (Fragments)| Length = 747 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/34 (47%), Positives = 17/34 (50%) Frame = +1 Query: 241 AAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 AAG PAG A GA S +G PGP GP Sbjct: 455 AAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGP 488
>Y2873_GEOSL (P61404) UPF0313 protein GSU2873| Length = 605 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/44 (31%), Positives = 20/44 (45%) Frame = -1 Query: 295 HRLDNGGKLLRLDGAPRLRHPLANHHSEQTWLKPAVVHVREEAD 164 HR +LL + P HPL H ++T L + EEA+ Sbjct: 225 HRYAEAFRLLSREQNPHCAHPLVQRHGDRTLLCNPPAYPLEEAE 268
>TRUA_STRAW (Q82DM1) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 285 Score = 27.7 bits (60), Expect = 6.9 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = +2 Query: 209 LLRVVVGERMPQ-PGSTVQPEELASIVEAVRTHGLLSEVLQDPSDQKLA 352 LL V G R P PG + S V VR HGL E + P+D+ LA Sbjct: 219 LLFVGDGHRGPDWPGKVLAVGVRDSAVHVVRPHGLTLEEVGYPADELLA 267
>COBQ_COREF (Q8FP85) Cobyric acid synthase| Length = 493 Score = 27.7 bits (60), Expect = 6.9 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = -1 Query: 259 DGAPRLRHPLANHHSEQTWLK 197 DG+ + H HH EQTW++ Sbjct: 384 DGSYEVHHGQVRHHGEQTWIE 404
>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)| Length = 779 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/43 (39%), Positives = 20/43 (46%) Frame = +1 Query: 214 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 PSG A AG P G A G+ + L G PGP+GP Sbjct: 693 PSG---ASGPAGPRGPPGSA------GSPGKDGLNGLPGPIGP 726
>VGLX_EHV1B (P28968) Glycoprotein X precursor| Length = 797 Score = 27.7 bits (60), Expect = 6.9 Identities = 22/80 (27%), Positives = 36/80 (45%) Frame = -2 Query: 387 STQASTVARHASASFWSDGSWRTSERRPCVRTASTMEASSSGWTVLPGCGIRSPTTTRSR 208 STQ+S+ A +S++ + S + T +T +S T P +PTT + Sbjct: 77 STQSSSTAATSSSAPSTASSTTSIPTSTSTETTTTTPTAS---TTTPTTTTAAPTTAATT 133 Query: 207 RGLSQLSFTSARKPTAPAIA 148 ++ + TSA TA A A Sbjct: 134 TAVTTAASTSAETTTATATA 153
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/43 (39%), Positives = 20/43 (46%) Frame = +1 Query: 214 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 PSG A AG P G A G+ + L G PGP+GP Sbjct: 1127 PSG---ASGPAGPRGPPGSA------GSPGKDGLNGLPGPIGP 1160
>CO1A2_RABIT (Q28668) Collagen alpha-2(I) chain precursor (Fragment)| Length = 526 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = +1 Query: 208 SAPSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 + P+G D +G G A L G+ + GPPGP GP Sbjct: 216 AGPTGPAGKDGRSGHPGTVGPAGLRGSQGSQGPAGPPGPPGPPGP 260
>SYH_PROMM (Q7V4P3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 436 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = +2 Query: 254 TVQPEELASIVEAVRTHGLLSE 319 T++PE AS+V A HGLLS+ Sbjct: 78 TLRPEGTASVVRAALQHGLLSQ 99
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/43 (39%), Positives = 20/43 (46%) Frame = +1 Query: 214 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 PSG A AG P G A G+ + L G PGP+GP Sbjct: 1120 PSG---ASGPAGPRGPPGSA------GSPGKDGLNGLPGPIGP 1153
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/43 (39%), Positives = 20/43 (46%) Frame = +1 Query: 214 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 PSG A AG P G A G+ + L G PGP+GP Sbjct: 1120 PSG---ASGPAGPRGPPGSA------GSPGKDGLNGLPGPIGP 1153
>CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor| Length = 1669 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = +1 Query: 247 GEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 G+ G +CL C LRGPPGP GP Sbjct: 458 GQKGQKGESCLACD-----TEGLRGPPGPQGP 484
>PCAB_PSEPU (P32427) 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2)| (3-carboxymuconate lactonizing enzyme) (CMLE) Length = 407 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/29 (44%), Positives = 14/29 (48%) Frame = -2 Query: 324 RTSERRPCVRTASTMEASSSGWTVLPGCG 238 RT RPC A M +S G T P CG Sbjct: 377 RTPGPRPCPPLAGAMLPASRGRTAAPACG 405
>Y891_SULAC (Q4JAC6) UPF0147 protein Saci_0891| Length = 89 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = +2 Query: 161 AVGFLADVNDSWLKPRLLRVVVGERMPQPGSTVQPEELASIVEAVRTHGLLSEVLQDPS 337 AVG L + + PR +R + + +Q + L+ V A G+L E+ QDP+ Sbjct: 14 AVGMLQKIVNDTSVPRNIRRAATDAI----RNLQDQTLSPAVRAANAIGILEEISQDPN 68
>PDR6_ORYSA (Q8GU87) Pleiotropic drug resistance protein 6| Length = 1450 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/53 (35%), Positives = 22/53 (41%) Frame = -2 Query: 357 ASASFWSDGSWRTSERRPCVRTASTMEASSSGWTVLPGCGIRSPTTTRSRRGL 199 A A+F GSWR E E + W L R PT R+RRGL Sbjct: 4 AEAAFARSGSWREEED----------EQEALRWAALQ----RLPTVARARRGL 42
>YBL2_STRCI (P33654) Hypothetical 14.2 kDa protein in blaB 3'region| Length = 132 Score = 27.3 bits (59), Expect = 9.0 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 11/80 (13%) Frame = -2 Query: 375 STVARHASASFWSDGSWRT-------SERRPCVRTASTMEASSSGWTVLP----GCGIRS 229 S++A +SAS W+ +W+T + R R+ ++M ++SS + P +R Sbjct: 48 SSIANGSSASSWAIRAWKTTWSRTSPNSSRSSPRSPASMASTSSYISSTPYLTRSWWVRR 107 Query: 228 PTTTRSRRGLSQLSFTSARK 169 +RR S S TS+R+ Sbjct: 108 ALHGHARRIRSMTSTTSSRR 127
>TCF15_MOUSE (Q60756) Transcription factor 15 (bHLH-EC2 protein) (Paraxis)| (Meso1) Length = 195 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = +1 Query: 247 GEHRPAGGACLHCRGGAHARSPLRGP 324 G R GG+CL RG A PLRGP Sbjct: 172 GSRRDLGGSCLKVRGVA----PLRGP 193
>TCF15_MESAU (Q60539) Transcription factor 15 (bHLH-EC2 protein) (Paraxis)| (Meso1) Length = 195 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = +1 Query: 247 GEHRPAGGACLHCRGGAHARSPLRGP 324 G R GG+CL RG A PLRGP Sbjct: 172 GSRRDLGGSCLKVRGVA----PLRGP 193
>FZD8_HUMAN (Q9H461) Frizzled 8 precursor (Frizzled-8) (Fz-8) (hFz8)| Length = 694 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 9/41 (21%) Frame = +1 Query: 220 GGWRADAAA---------GEHRPAGGACLHCRGGAHARSPL 315 GG DAAA G+ RP GG C G R+P+ Sbjct: 198 GGGGGDAAAPPARGGGGGGKARPPGGGAAPCEPGCQCRAPM 238
>LIPA_MYCTU (P65283) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)| (Lipoate synthase) (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) Length = 311 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Frame = -1 Query: 235 PLANHHSEQTWLKP-AVVHVREEADGAGHRWLVRGP 131 P A HH + W+KP V A+G G ++ GP Sbjct: 252 PSARHHPVERWVKPEEFVQFARFAEGLGFAGVLAGP 287
>LIPA_MYCBO (P65284) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)| (Lipoate synthase) (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) Length = 311 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Frame = -1 Query: 235 PLANHHSEQTWLKP-AVVHVREEADGAGHRWLVRGP 131 P A HH + W+KP V A+G G ++ GP Sbjct: 252 PSARHHPVERWVKPEEFVQFARFAEGLGFAGVLAGP 287
>COFA1_HUMAN (P39059) Collagen alpha-1(XV) chain precursor [Contains: Endostatin| (Endostatin-XV) (Restin) (Related to endostatin)] Length = 1388 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/40 (37%), Positives = 17/40 (42%) Frame = +1 Query: 223 GWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 342 GW +D +G G L LRGPPGP GP Sbjct: 598 GWGSDVGSGSGDLVGSEQL-----------LRGPPGPPGP 626
>MVP_MOUSE (Q9EQK5) Major vault protein (MVP)| Length = 860 Score = 27.3 bits (59), Expect = 9.0 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 9/63 (14%) Frame = -1 Query: 292 RLDNGGKLLRLDGAPRLRHPLANHH--SEQTWLKPAVVHVREEADG-------AGHRWLV 140 R+ G K L RL + + + SEQ L + EE +G AG RWL+ Sbjct: 299 RVVKGEKSFFLQPGERLERGIQDVYVLSEQQGLLLKALQPLEEGEGEERVAHQAGDRWLI 358 Query: 139 RGP 131 RGP Sbjct: 359 RGP 361
>AIRE_HUMAN (O43918) Autoimmune regulator (Autoimmune polyendocrinopathy| candidiasis ectodermal dystrophy protein) (APECED protein) Length = 545 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 9/45 (20%) Frame = +1 Query: 226 WRADAAAGEHRPAGG-ACLHCRG--------GAHARSPLRGPPGP 333 WR AG RP G C C G G A SP R PGP Sbjct: 455 WRCHFPAGTSRPGTGLRCRSCSGDVTPAPVEGVLAPSPARLAPGP 499
>IDI_RHOCA (P26173) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) (IPP:DMAPP isomerase) (Bacteriochlorophyll synthase 20 kDa chain) Length = 176 Score = 27.3 bits (59), Expect = 9.0 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Frame = +2 Query: 158 GAVGFLADVNDSWLKPRLLRVVVGER----MPQPGSTVQPEELASIVEAVRTHGLLSEVL 325 G + + ADVN+ ++ ++ V E PQP PEE+A E VR L SE+ Sbjct: 95 GQLEYRADVNNGMIEHEVVEVFTAEAPEGIEPQP----DPEEVAD-TEWVRIDALRSEIH 149 Query: 326 QDP 334 +P Sbjct: 150 ANP 152 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,335,277 Number of Sequences: 219361 Number of extensions: 922688 Number of successful extensions: 5069 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 3443 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4939 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
