>gb|AC135922.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0411C02,
             complete sequence
          Length = 145676

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                             
Query: 344   aagctcgccgaggcgtggcgcgccacggtcgacgcctgggtcgagcgc 391
             |||||||||||||||||||| ||| | |||||||| ||||||||||||
Sbjct: 62113 aagctcgccgaggcgtggcgtgccgccgtcgacgcgtgggtcgagcgc 62066



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 115/143 (80%)
 Strand = Plus / Minus

                                                                         
Query: 170   ttcctcgcggacgtgaacgacagctggcttaagccacgtctgctccgagtggtggttggc 229
             |||||||| |||| |||||||  |||||| ||||| || ||||| || | |||||| |||
Sbjct: 62287 ttcctcgccgacgcgaacgacccctggctcaagccgcggctgctgcgggcggtggtcggc 62228

                                                                         
Query: 230   gagcggatgccgcagccggggagcaccgtccagccggaggagcttgcctccattgtcgag 289
             |||||| |||||  ||| |||| |  | | | ||||| |||||| ||||||||  |||| 
Sbjct: 62227 gagcggctgccgaggcccgggaccgacctgccgccggcggagctcgcctccatcctcgac 62168

                                    
Query: 290   gcggtgcgcacgcacggtctcct 312
             |||||||||||||| || |||||
Sbjct: 62167 gcggtgcgcacgcatggcctcct 62145

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                                
Query: 344      aagctcgccgaggcgtggcgcgccacggtcgacgcctgggtcgagcgc 391
                |||||||||||||||||||| ||| | |||||||| ||||||||||||
Sbjct: 12982044 aagctcgccgaggcgtggcgtgccgccgtcgacgcgtgggtcgagcgc 12981997



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 115/143 (80%)
 Strand = Plus / Minus

                                                                            
Query: 170      ttcctcgcggacgtgaacgacagctggcttaagccacgtctgctccgagtggtggttggc 229
                |||||||| |||| |||||||  |||||| ||||| || ||||| || | |||||| |||
Sbjct: 12982218 ttcctcgccgacgcgaacgacccctggctcaagccgcggctgctgcgggcggtggtcggc 12982159

                                                                            
Query: 230      gagcggatgccgcagccggggagcaccgtccagccggaggagcttgcctccattgtcgag 289
                |||||| |||||  ||| |||| |  | | | ||||| |||||| ||||||||  |||| 
Sbjct: 12982158 gagcggctgccgaggcccgggaccgacctgccgccggcggagctcgcctccatcctcgac 12982099

                                       
Query: 290      gcggtgcgcacgcacggtctcct 312
                |||||||||||||| || |||||
Sbjct: 12982098 gcggtgcgcacgcatggcctcct 12982076

>dbj|AK069962.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037D24, full
           insert sequence
          Length = 3065

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 344 aagctcgccgaggcgtggcgcgccacggtcgacgcctgggtcgagcgc 391
           |||||||||||||||||||| ||| | |||||||| ||||||||||||
Sbjct: 305 aagctcgccgaggcgtggcgtgccgccgtcgacgcgtgggtcgagcgc 352



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 115/143 (80%)
 Strand = Plus / Plus

                                                                       
Query: 170 ttcctcgcggacgtgaacgacagctggcttaagccacgtctgctccgagtggtggttggc 229
           |||||||| |||| |||||||  |||||| ||||| || ||||| || | |||||| |||
Sbjct: 131 ttcctcgccgacgcgaacgacccctggctcaagccgcggctgctgcgggcggtggtcggc 190

                                                                       
Query: 230 gagcggatgccgcagccggggagcaccgtccagccggaggagcttgcctccattgtcgag 289
           |||||| |||||  ||| |||| |  | | | ||||| |||||| ||||||||  |||| 
Sbjct: 191 gagcggctgccgaggcccgggaccgacctgccgccggcggagctcgcctccatcctcgac 250

                                  
Query: 290 gcggtgcgcacgcacggtctcct 312
           |||||||||||||| || |||||
Sbjct: 251 gcggtgcgcacgcatggcctcct 273

>gb|AC167718.4| Culex pipiens quinquefasciatus, clone Culex pipiens
            quinquefasciatus-3940130D9, complete sequence
          Length = 117683

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 347  ctcgccgaggcgtggcgcgccacggt 372
            |||||||||||||||||||| |||||
Sbjct: 3976 ctcgccgaggcgtggcgcgcgacggt 3951

>gb|AC167662.6| Culex pipiens quinquefasciatus, clone Culex pipiens
              quinquefasciatus-3940141D9, complete sequence
          Length = 117679

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 347    ctcgccgaggcgtggcgcgccacggt 372
              |||||||||||||||||||| |||||
Sbjct: 113706 ctcgccgaggcgtggcgcgcgacggt 113731

>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16
          Length = 347356

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 352    cgaggcgtggcgcgccacggt 372
              |||||||||||||||||||||
Sbjct: 120458 cgaggcgtggcgcgccacggt 120438

>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14
          Length = 348251

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 352    cgaggcgtggcgcgccacggt 372
              |||||||||||||||||||||
Sbjct: 124653 cgaggcgtggcgcgccacggt 124633

>emb|BX640413.1| Bordetella pertussis strain Tohama I, complete genome; segment 3/12
          Length = 349028

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 352   cgaggcgtggcgcgccacggt 372
             |||||||||||||||||||||
Sbjct: 33216 cgaggcgtggcgcgccacggt 33196

>gb|AF279141.1|AF279141 Rhodococcus sp. 19070 benzoate dioxygenase large subunit (bopX),
            benzoate dioxygenase small subunit (bopY), benzoate
            dioxygenase reductase (bopZ), cis-diol dehydrogenase
            (bopL), and benzoate transport protein (bopK) genes,
            complete cds
          Length = 6058

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 284  gtcgaggcggtgcgcacgcac 304
            |||||||||||||||||||||
Sbjct: 2875 gtcgaggcggtgcgcacgcac 2895

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 154     ggccggcgccgtcggcttcct 174
               |||||||||||||||||||||
Sbjct: 3783935 ggccggcgccgtcggcttcct 3783915

>gb|AY298859.1| Xiphophorus maculatus Rex3 retrotransposon, Rex2 retrotransposon, and
             Rex1 retrotransposon, complete sequence
          Length = 48940

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   tgcctccattgtcgaggcgg 293
             ||||||||||||||||||||
Sbjct: 11266 tgcctccattgtcgaggcgg 11247

>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    tggccggcgccgtcggcttc 172
              ||||||||||||||||||||
Sbjct: 576969 tggccggcgccgtcggcttc 576988

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 348     tcgccgaggcgtggcgcgcc 367
               ||||||||||||||||||||
Sbjct: 5098868 tcgccgaggcgtggcgcgcc 5098849



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 356     gcgtggcgcgccacggtcgacgcc 379
               |||||||||| |||||||||||||
Sbjct: 2424143 gcgtggcgcggcacggtcgacgcc 2424120

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 29      ccggagccgccgccttcttc 48
               ||||||||||||||||||||
Sbjct: 6918691 ccggagccgccgccttcttc 6918672

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 104     cccaagtccggcgcccgcct 123
               ||||||||||||||||||||
Sbjct: 5900261 cccaagtccggcgcccgcct 5900242

>dbj|AP005522.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0479H10
          Length = 139874

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     ccggagccgccgccttcttc 48
              ||||||||||||||||||||
Sbjct: 108216 ccggagccgccgccttcttc 108197

>ref|XM_564049.1| Anopheles gambiae str. PEST ENSANGP00000025832
           (ENSANGG00000024008), partial mRNA
          Length = 672

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  ccatccctccatcccggagc 35
           ||||||||||||||||||||
Sbjct: 356 ccatccctccatcccggagc 375

>dbj|AK102149.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086C22, full
           insert sequence
          Length = 884

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 29  ccggagccgccgccttcttc 48
           ||||||||||||||||||||
Sbjct: 155 ccggagccgccgccttcttc 174

>gb|AF125982.1|AF125982 Xiphophorus maculatus retrotransposon Rex3b endonuclease/reverse
           transcriptase (EN/RT) pseudogene, partial sequence; and
           unknown gene
          Length = 2624

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 274 tgcctccattgtcgaggcgg 293
           ||||||||||||||||||||
Sbjct: 549 tgcctccattgtcgaggcgg 568

>gb|AF125981.1|AF125981 Xiphophorus maculatus retrotransposon Rex3a reverse transcriptase
           (RT) pseudogene, complete sequence
          Length = 2109

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 tgcctccattgtcgaggcgg 293
           ||||||||||||||||||||
Sbjct: 339 tgcctccattgtcgaggcgg 320

>dbj|AK072147.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128D23, full
           insert sequence
          Length = 2049

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 29  ccggagccgccgccttcttc 48
           ||||||||||||||||||||
Sbjct: 129 ccggagccgccgccttcttc 148


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,229,334
Number of Sequences: 3902068
Number of extensions: 2229334
Number of successful extensions: 55784
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55132
Number of HSP's gapped (non-prelim): 652
length of query: 397
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 375
effective length of database: 17,147,199,772
effective search space: 6430199914500
effective search space used: 6430199914500
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)