ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl25a01 |
|---|---|
| Clone Library Name | barley_pub |
>R13L2_ARATH (Q9STE5) Putative disease resistance RPP13-like protein 2| Length = 847 Score = 32.0 bits (71), Expect = 0.39 Identities = 15/50 (30%), Positives = 29/50 (58%) Frame = +1 Query: 184 QEYALIRGVRGDIQYINDELCSMQAFLTNLGAGDEEHDAQIQDWAKQIRD 333 +E ++ GV+ D++ + EL +Q +L N+ D+E D ++W K + D Sbjct: 19 EEAPMLIGVKDDLEELKTELTCIQVYLKNVEVCDKE-DEVSKEWTKLVLD 67
>YBOX2_HUMAN (Q9Y2T7) Y-box-binding protein 2 (Germ cell-specific Y-box-binding| protein) (Contrin) (MSY2 homolog) Length = 364 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +3 Query: 171 QPPSPGVRSDPWRPRRHPVHQRRALQHAG 257 Q P+ G R +P RPR P QRR Q G Sbjct: 306 QGPADGSRPEPQRPRNRPYFQRRRQQAPG 334
>NHA2_RHORH (P29378) Low-molecular weight cobalt-containing nitrile hydratase| subunit alpha (EC 4.2.1.84) (L-nitrilase) (L-NHase) Length = 206 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = -3 Query: 242 SSSLMYWMSPRTPRIRAYSWARRLPSLLTRDFTVDCEAPTTRS 114 S+ L YW+ P+ P +L L+TRD + PTT S Sbjct: 162 SAELRYWVLPQRPAGTENFTEEQLADLVTRDSLIGVSVPTTPS 204
>YBOX2_MOUSE (Q9Z2C8) Y-box-binding protein 2 (Germ cell-specific Y-box-binding| protein) (FRGY2 homolog) Length = 360 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +3 Query: 171 QPPSPGVRSDPWRPRRHPVHQRRALQHAG 257 Q P+ G R +P RPR P QRR Q G Sbjct: 308 QGPTDGSRPEPQRPRNRPYFQRRRQQPPG 336
>RIN3_HUMAN (Q8TB24) Ras and Rab interactor 3 (Ras interaction/interference| protein 3) Length = 984 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 8/33 (24%) Frame = -1 Query: 187 PGLGGCPA--------CSPETSRWIAKLPPPDP 113 P LG CPA + TSRW + PPP P Sbjct: 252 PPLGNCPARPLPPTSDATSPTSRWAPRRPPPPP 284
>CDT1_MOUSE (Q8R4E9) DNA replication factor Cdt1 (Double parked homolog) (DUP)| (Retroviral insertion site 2 protein) Length = 557 Score = 29.6 bits (65), Expect = 2.0 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = -1 Query: 193 RTPGLGGCPACSPETSRWIAKLPPPDP 113 R PGL CP+ PE S PP DP Sbjct: 68 RLPGLDSCPSSLPEPSSPAEPSPPADP 94
>ATX5_ARATH (Q8GZ42) Histone-lysine N-methyltransferase ATX5 (EC 2.1.1.43)| (Trithorax-homolog protein 5) (TRX-homolog protein 5) (Protein SET DOMAIN GROUP 29) Length = 1043 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = -3 Query: 278 APRLVRKACMLQSSSLMYWMSPRTPRIRAYSWARR 174 AP LV ++C+ ++ +M++ T R Y+W RR Sbjct: 249 APELVLRSCIPDAACVMFFGHSGTENERDYAWVRR 283
>EDN1_ATEAB (Q5NRP9) Endothelin-1 precursor (ET-1) (Preproendothelin-1) (PPET1)| Length = 202 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/20 (65%), Positives = 14/20 (70%) Frame = +3 Query: 159 EQAGQPPSPGVRSDPWRPRR 218 EQ G+ PSP S PWRPRR Sbjct: 33 EQGGEQPSP---SPPWRPRR 49
>EMBA_MYCSM (Q50394) Probable arabinosyltransferase A (EC 2.4.2.-)| Length = 1092 Score = 29.3 bits (64), Expect = 2.6 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Frame = -1 Query: 193 RTPGLGGC---PACSPETSRWIAKLPPPDPFSSLTTLPANSADYGWDDDGYLRCAQKLVL 23 RTP +G + TS W +LPP P L T+ A A + +++DG Q L L Sbjct: 834 RTPVMGSYGENKLAAKATSAWY-QLPPRTPDRPLVTVAAAGAIWYYEEDGSFNYGQSLKL 892 Query: 22 R 20 + Sbjct: 893 Q 893
>VGLC_HHV2H (Q89730) Glycoprotein C precursor| Length = 480 Score = 26.6 bits (57), Expect(2) = 2.7 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%) Frame = -3 Query: 272 RLVRKACMLQSSSLMYWMSPRTPRIRAY-SWAR----RLPSL 162 RL+ + L++ + YW+ RT R AY +W R R PSL Sbjct: 197 RLIIEELTLETQGMYYWVWGRTDRPSAYGTWVRVRVFRPPSL 238 Score = 21.2 bits (43), Expect(2) = 2.7 Identities = 7/19 (36%), Positives = 12/19 (63%) Frame = -1 Query: 109 SSLTTLPANSADYGWDDDG 53 ++ T P N A++ W +DG Sbjct: 256 TAATYYPGNRAEFVWFEDG 274
>VGLC_HHV23 (P06475) Glycoprotein C precursor| Length = 480 Score = 26.6 bits (57), Expect(2) = 2.7 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%) Frame = -3 Query: 272 RLVRKACMLQSSSLMYWMSPRTPRIRAY-SWAR----RLPSL 162 RL+ + L++ + YW+ RT R AY +W R R PSL Sbjct: 197 RLIIEELTLETQGMYYWVWGRTDRPSAYGTWVRVRVFRPPSL 238 Score = 21.2 bits (43), Expect(2) = 2.7 Identities = 7/19 (36%), Positives = 12/19 (63%) Frame = -1 Query: 109 SSLTTLPANSADYGWDDDG 53 ++ T P N A++ W +DG Sbjct: 256 TAATYYPGNRAEFVWFEDG 274
>VGLC_HHV2G (P03173) Glycoprotein C precursor (Glycoprotein F)| Length = 479 Score = 26.6 bits (57), Expect(2) = 2.7 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%) Frame = -3 Query: 272 RLVRKACMLQSSSLMYWMSPRTPRIRAY-SWAR----RLPSL 162 RL+ + L++ + YW+ RT R AY +W R R PSL Sbjct: 196 RLIIEELTLETQGMYYWVWGRTDRPSAYGTWVRVRVFRPPSL 237 Score = 21.2 bits (43), Expect(2) = 2.7 Identities = 7/19 (36%), Positives = 12/19 (63%) Frame = -1 Query: 109 SSLTTLPANSADYGWDDDG 53 ++ T P N A++ W +DG Sbjct: 255 TAATYYPGNRAEFVWFEDG 273
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 28.5 bits (62), Expect = 4.4 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = -1 Query: 187 PGLGGCPACSPETSRWIAKLPPPDP 113 PG+GG P P R+ +PPP P Sbjct: 328 PGMGGMPPPPPPGMRYPGGMPPPPP 352
>TOLB_BRAJA (Q89ED5) Protein tolB precursor| Length = 454 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Frame = +3 Query: 90 GRVVKL--ENGSGGGSFAIHREVSGEQAGQPPSPGVRSDP-WRP 212 GRV+ + G GG ++SG + P+PG SDP W P Sbjct: 403 GRVLMFFRDPGGSGGPSLYSVDISGRNELKVPTPGFASDPAWSP 446
>TOP1P_XYLFA (Q9PHK2) DNA topoisomerase I, plasmid (EC 5.99.1.2) (Omega-protein)| (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 660 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = -1 Query: 136 AKLPPPDPFSSLTTLPANSADYGWDDDGYLRCAQKL 29 AK PP PF++ T A S G D + AQKL Sbjct: 244 AKRSPPPPFTTSTMQQAASVTLGVDPKAAMDAAQKL 279
>PO3F3_MOUSE (P31361) POU domain, class 3, transcription factor 3| (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein) Length = 495 Score = 27.7 bits (60), Expect = 7.4 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Frame = +3 Query: 66 HP*SAEFAGRVVKLENGSGGGSFAIHREVSGEQAGQPPSPGVRSDPWR--PRRHPVHQRR 239 H +A A +E S A+ S +Q QPP P + + R +H Sbjct: 100 HAAAAAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGREDLHAGT 159 Query: 240 ALQHAGLPH 266 AL H G PH Sbjct: 160 ALHHRGPPH 168
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/31 (38%), Positives = 13/31 (41%) Frame = -1 Query: 205 HGSERTPGLGGCPACSPETSRWIAKLPPPDP 113 HG P GG P +P LPPP P Sbjct: 115 HGGPAPPPPGGAPEHAPGVKEEYTHLPPPHP 145
>TMC6_MOUSE (Q7TN60) Transmembrane channel-like protein 6| Length = 810 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -1 Query: 202 GSERTPGLGGCPACSPETSRWIAKLP 125 G + PGL G PA S T R +A +P Sbjct: 60 GDQTLPGLEGAPALSSATLRILASMP 85
>TBX33_CAEEL (O45291) Putative T-box protein 33| Length = 507 Score = 27.3 bits (59), Expect = 9.7 Identities = 22/66 (33%), Positives = 30/66 (45%) Frame = +3 Query: 3 SLLEKALSTNFWAQRKYPSSSHP*SAEFAGRVVKLENGSGGGSFAIHREVSGEQAGQPPS 182 S+ A STNF A +YP +S P S+ FA S SF + + EQ P Sbjct: 407 SVSTTAPSTNFHAPLQYPGTSSP-SSNFAPMTPSTSFDSAYSSFNV-TSSTPEQMCYNPI 464 Query: 183 PGVRSD 200 P + +D Sbjct: 465 PSMSTD 470
>CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48)| Length = 2441 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 5/39 (12%) Frame = +3 Query: 162 QAGQPPSPGVRSDPWRPRRHPVHQRRALQH-----AGLP 263 Q G P PG++S P + +HQ+ +LQ+ AG+P Sbjct: 2113 QPGMQPQPGLQSQPGMQPQPGMHQQPSLQNLNAMQAGVP 2151
>LARP1_HUMAN (Q6PKG0) La-related protein 1 (La ribonucleoprotein domain family| member 1) Length = 1096 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/45 (28%), Positives = 22/45 (48%) Frame = -3 Query: 218 SPRTPRIRAYSWARRLPSLLTRDFTVDCEAPTTRSIFEFDDPPRE 84 +PRTP+++ S R ++ T+D + P R +PP E Sbjct: 785 TPRTPQLKDSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLE 829
>COFA1_MOUSE (O35206) Collagen alpha-1(XV) chain precursor [Contains: Endostatin| (Endostatin-XV)] Length = 1367 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = +3 Query: 78 AEFAGRVVKLENGSGGGSFAIHREVSGEQAGQPPSPGVRSDPWRP 212 AE +G V L+ GSG G + ++ G P PG P +P Sbjct: 578 AEGSGPVGGLDEGSGSGDIVGNEDLLRGPPGPPGPPGSPGIPGKP 622
>YRU4_CAEEL (Q09350) Hypothetical protein T09B9.4| Length = 528 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +3 Query: 111 NGSGGGSFAIHREVSGEQAGQPPSPG 188 +G G SF++HR SG PSPG Sbjct: 19 SGRGESSFSVHRSHSGGHEPFAPSPG 44
>PO3F3_HUMAN (P20264) POU domain, class 3, transcription factor 3| (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein) Length = 500 Score = 27.3 bits (59), Expect = 9.7 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Frame = +3 Query: 66 HP*SAEFAGRVVKLENGSGGGSFAIHREVSGEQAGQPPSPGVRSDPWR--PRRHPVHQRR 239 H +A A +E S A+ S +Q QPP P + + R +H Sbjct: 103 HAAAAAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGT 162 Query: 240 ALQHAGLPH 266 AL H G PH Sbjct: 163 ALHHRGPPH 171
>SEN2_NEUCR (Q9P6Y2) Probable tRNA-splicing endonuclease subunit sen-2 (EC| 3.1.27.9) (tRNA-intron endonuclease sen-2) Length = 633 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +3 Query: 153 SGEQAGQPPSPGVRSDPWRPRRHPVHQ 233 SGE+A +P S P RP R P HQ Sbjct: 20 SGEEAPASTNPAATSAPPRPPRVPYHQ 46
>COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Contains:| Endostatin] Length = 1516 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +3 Query: 114 GSGGGSFAIHREVSGEQAGQPPSPGVRSDPWRP 212 GSGG ++ R G Q G P PG++ DP P Sbjct: 796 GSGGPFWSTARSADGPQ-GPPGLPGLKGDPGVP 827
>CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)| Length = 2442 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 5/39 (12%) Frame = +3 Query: 162 QAGQPPSPGVRSDPWRPRRHPVHQRRALQH-----AGLP 263 Q G P PG++S P + +HQ+ +LQ+ AG+P Sbjct: 2112 QPGMQPQPGLQSQPGMQPQPGMHQQPSLQNLNAMQAGVP 2150 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,209,228 Number of Sequences: 219361 Number of extensions: 857328 Number of successful extensions: 3470 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3332 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3468 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
