ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl24h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VPE_VICSA (P49044) Vacuolar processing enzyme precursor (EC 3.4.... 30 2.2
2MYO1F_HUMAN (O00160) Myosin If (Myosin-IE) 28 4.8
3CWC27_EMENI (Q5AUG9) Peptidyl-prolyl isomerase cwc27 (EC 5.2.1.8) 28 6.3
4PEN4D_LITSE (Q962A7) Penaeidin-4d precursor (Pen-4d) 28 6.3
5SGS3_DROER (P13730) Salivary glue protein Sgs-3 precursor 28 8.2
6SI1L3_HUMAN (O60292) Signal-induced proliferation-associated 1-l... 28 8.2

>VPE_VICSA (P49044) Vacuolar processing enzyme precursor (EC 3.4.22.-) (VPE)|
           (Proteinase B)
          Length = 493

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 24  PCEASQDLRSPSDDDDWAATRW 89
           P E S+  R P +DDD+  TRW
Sbjct: 36  PSETSRFFREPKNDDDFEGTRW 57



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>MYO1F_HUMAN (O00160) Myosin If (Myosin-IE)|
          Length = 1098

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = +1

Query: 169  RSHQAPQRQARVPPRGAPECPGVPP 243
            RS QAP R A  PPRG  +  GVPP
Sbjct: 937  RSSQAPTRAAPAPPRGM-DRNGVPP 960



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>CWC27_EMENI (Q5AUG9) Peptidyl-prolyl isomerase cwc27 (EC 5.2.1.8)|
          Length = 558

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -1

Query: 246 MRRHSRAFGSTTRRYPRLSLRGLVTSTSTFAMAGAEAPPAGSLGTSTS 103
           MRR + A  + T+  P+ +L  ++  T   A+ G + PP GS+  STS
Sbjct: 337 MRRTAHAPAAETK--PKSALEAMIPQT---AIRGRKRPPPGSVSASTS 379



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>PEN4D_LITSE (Q962A7) Penaeidin-4d precursor (Pen-4d)|
          Length = 67

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 139 LCSGHREG*GRSHQAPQRQARVPPRGAPECPGVP 240
           +C GH  G  R  + P R   + P G   C G+P
Sbjct: 16  VCQGHSSGYTRPLRKPSRPIFIRPIGCDVCYGIP 49



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>SGS3_DROER (P13730) Salivary glue protein Sgs-3 precursor|
          Length = 328

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 10 TSPNPRAKPRKTCAPLATTT 69
          T+P P    R TCAP+ TTT
Sbjct: 32 TTPKPCTTARPTCAPVTTTT 51



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>SI1L3_HUMAN (O60292) Signal-induced proliferation-associated 1-like protein 3|
            (SPA-1-like protein 3)
          Length = 1781

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 139  LCSGHREG*GRSHQAPQRQARVP-PRGAPECPGVPP 243
            LC G RE  GRSH A +R+   P P  A +  G  P
Sbjct: 1343 LCGGGREAAGRSHHADRRREVSPAPAVAGQSKGYRP 1378


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,359,458
Number of Sequences: 219361
Number of extensions: 363880
Number of successful extensions: 1844
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1843
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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