ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl24h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12) 44 1e-04
2LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12) 34 0.12
3RL2_XANCP (Q8PC46) 50S ribosomal protein L2 28 5.2

>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 862

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +2

Query: 110 MLLGGLIDTLTGANKSARLKG 172
           MLLGGLIDTLTGANKSARLKG
Sbjct: 1   MLLGGLIDTLTGANKSARLKG 21



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>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)|
          Length = 866

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 13/20 (65%), Positives = 19/20 (95%)
 Frame = +2

Query: 113 LLGGLIDTLTGANKSARLKG 172
           +LGG+IDT+TG++K +RLKG
Sbjct: 1   MLGGIIDTITGSSKQSRLKG 20



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>RL2_XANCP (Q8PC46) 50S ribosomal protein L2|
          Length = 275

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 82  KARRGGRE--QDAAGRADRHPHGGEQERPAQG 171
           K RRG R   + AA  A+ HPHGG + +  QG
Sbjct: 211 KRRRGVRPTVRGAAMNANDHPHGGGEAKAGQG 242


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,082,039
Number of Sequences: 219361
Number of extensions: 310907
Number of successful extensions: 705
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 80,573,946
effective HSP length: 33
effective length of database: 73,335,033
effective search space used: 1760040792
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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