Clone Name | bastl24h02 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (S... | 30 | 1.8 | 2 | PI5PA_HUMAN (Q15735) Phosphatidylinositol 4,5-bisphosphate 5-pho... | 28 | 9.1 | 3 | CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22 | 28 | 9.1 |
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>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of| white-apricot homolog 2) Length = 659 Score = 30.0 bits (66), Expect = 1.8 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +1 Query: 22 PNPARRRERGRNHSPRPPPAESLAARPHVFIPRLGRRCAERE 147 P+ +R R R R+ SP P PA RP P +G + + E Sbjct: 503 PSQSRSRSRSRSQSPSPSPAREKLTRP-AASPAVGEKLKKTE 543
>PI5PA_HUMAN (Q15735) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) Length = 1006 Score = 27.7 bits (60), Expect = 9.1 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +1 Query: 19 LPNPARRRERGRNHSPRPPPAESLAARPHVFIPRLG 126 LP P R R +HSP P + P + +PRLG Sbjct: 341 LPKPPRSPSRSPSHSPNRSPC--VPPAPDMALPRLG 374
>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22| Length = 831 Score = 27.7 bits (60), Expect = 9.1 Identities = 16/50 (32%), Positives = 22/50 (44%) Frame = +1 Query: 1 NQPQFLLPNPARRRERGRNHSPRPPPAESLAARPHVFIPRLGRRCAERER 150 ++P+ P P RRR + SP PPP + P RR A+ R Sbjct: 741 DEPRSPSPPPRRRRYSDDSRSPSPPPRRRYSGDSRSPSPPPRRRYADDSR 790 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,978,589 Number of Sequences: 219361 Number of extensions: 250806 Number of successful extensions: 1112 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1033 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1101 length of database: 80,573,946 effective HSP length: 25 effective length of database: 75,089,921 effective search space used: 1802158104 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)