ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl24h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (S... 30 1.8
2PI5PA_HUMAN (Q15735) Phosphatidylinositol 4,5-bisphosphate 5-pho... 28 9.1
3CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22 28 9.1

>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2)
          Length = 659

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 22  PNPARRRERGRNHSPRPPPAESLAARPHVFIPRLGRRCAERE 147
           P+ +R R R R+ SP P PA     RP    P +G +  + E
Sbjct: 503 PSQSRSRSRSRSQSPSPSPAREKLTRP-AASPAVGEKLKKTE 543



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>PI5PA_HUMAN (Q15735) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC|
           3.1.3.56)
          Length = 1006

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 19  LPNPARRRERGRNHSPRPPPAESLAARPHVFIPRLG 126
           LP P R   R  +HSP   P   +   P + +PRLG
Sbjct: 341 LPKPPRSPSRSPSHSPNRSPC--VPPAPDMALPRLG 374



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>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22|
          Length = 831

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 1   NQPQFLLPNPARRRERGRNHSPRPPPAESLAARPHVFIPRLGRRCAERER 150
           ++P+   P P RRR    + SP PPP    +       P   RR A+  R
Sbjct: 741 DEPRSPSPPPRRRRYSDDSRSPSPPPRRRYSGDSRSPSPPPRRRYADDSR 790


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,978,589
Number of Sequences: 219361
Number of extensions: 250806
Number of successful extensions: 1112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 80,573,946
effective HSP length: 25
effective length of database: 75,089,921
effective search space used: 1802158104
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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