Clone Name | bastl24g05 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK101520.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046K22, full insert sequence Length = 2513 Score = 85.7 bits (43), Expect = 8e-14 Identities = 49/51 (96%) Strand = Plus / Plus Query: 266 caccgaatagaggaaaaaatcagcgtaacaagggcataagcattatcagct 316 |||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1969 caccaaatagagggaaaaatcagcgtaacaagggcataagcattatcagct 2019 Score = 65.9 bits (33), Expect = 8e-08 Identities = 42/45 (93%) Strand = Plus / Plus Query: 25 attgatgacagtgatggcttaccatctaagcaggccgaagaagtg 69 |||||||| |||||||||||| |||| |||||||||||||||||| Sbjct: 1662 attgatgatagtgatggcttatcatcaaagcaggccgaagaagtg 1706
>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0108E17, complete sequence Length = 139829 Score = 77.8 bits (39), Expect = 2e-11 Identities = 42/43 (97%) Strand = Plus / Plus Query: 274 agaggaaaaaatcagcgtaacaagggcataagcattatcagct 316 ||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 52679 agagggaaaaatcagcgtaacaagggcataagcattatcagct 52721 Score = 65.9 bits (33), Expect = 8e-08 Identities = 42/45 (93%) Strand = Plus / Plus Query: 25 attgatgacagtgatggcttaccatctaagcaggccgaagaagtg 69 |||||||| |||||||||||| |||| |||||||||||||||||| Sbjct: 52285 attgatgatagtgatggcttatcatcaaagcaggccgaagaagtg 52329
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 77.8 bits (39), Expect = 2e-11 Identities = 42/43 (97%) Strand = Plus / Plus Query: 274 agaggaaaaaatcagcgtaacaagggcataagcattatcagct 316 ||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 24983826 agagggaaaaatcagcgtaacaagggcataagcattatcagct 24983868 Score = 65.9 bits (33), Expect = 8e-08 Identities = 42/45 (93%) Strand = Plus / Plus Query: 25 attgatgacagtgatggcttaccatctaagcaggccgaagaagtg 69 |||||||| |||||||||||| |||| |||||||||||||||||| Sbjct: 24983432 attgatgatagtgatggcttatcatcaaagcaggccgaagaagtg 24983476
>ref|XM_475668.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2205 Score = 65.9 bits (33), Expect = 8e-08 Identities = 42/45 (93%) Strand = Plus / Plus Query: 25 attgatgacagtgatggcttaccatctaagcaggccgaagaagtg 69 |||||||| |||||||||||| |||| |||||||||||||||||| Sbjct: 370 attgatgatagtgatggcttatcatcaaagcaggccgaagaagtg 414
>dbj|AK105718.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-F09, full insert sequence Length = 2478 Score = 65.9 bits (33), Expect = 8e-08 Identities = 42/45 (93%) Strand = Plus / Plus Query: 25 attgatgacagtgatggcttaccatctaagcaggccgaagaagtg 69 |||||||| |||||||||||| |||| |||||||||||||||||| Sbjct: 447 attgatgatagtgatggcttatcatcaaagcaggccgaagaagtg 491
>ref|XM_425667.1| PREDICTED: Gallus gallus similar to P2Y purinoceptor 2 (P2Y2) (P2U purinoceptor 1) (P2U1) (ATP receptor) (Purinergic receptor) (LOC428108), mRNA Length = 1761 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 agaagtggcactgaaggttgg 83 ||||||||||||||||||||| Sbjct: 226 agaagtggcactgaaggttgg 206
>gb|AC161810.10| Mus musculus chromosome 3, clone RP24-363L5, complete sequence Length = 151433 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 tggaaagagagtctcctcta 166 |||||||||||||||||||| Sbjct: 40720 tggaaagagagtctcctcta 40701
>emb|Z84475.1|HS162C6 Human DNA sequence from clone RP1-162C6 on chromosome 6q21, complete sequence Length = 91017 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 ttcacagcaaaataaacaat 240 |||||||||||||||||||| Sbjct: 6068 ttcacagcaaaataaacaat 6087
>emb|AL365215.23| Human DNA sequence from clone RP11-416D8 on chromosome 10 Contains the 5' end of the RSU1 gene for Ras suppressor protein 1, the 3' end of the CUBN gene for cubilin (intrinsic factor-cobalamin receptor) and a CpG island, complete sequence Length = 184703 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 gcttcagatgggccagacca 122 |||||||||||||||||||| Sbjct: 47119 gcttcagatgggccagacca 47138
>emb|X82596.1|RLAAPJQMP R.leguminosarum aapJ, Q, M, P genes and ORF5 Length = 5441 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 aagcaggccgaagaagtggc 71 |||||||||||||||||||| Sbjct: 4612 aagcaggccgaagaagtggc 4631
>gb|AC068757.20| Homo sapiens 3 BAC RP11-49A13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158438 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 ttcacagcaaaataaacaat 240 |||||||||||||||||||| Sbjct: 18586 ttcacagcaaaataaacaat 18605
>gb|AC104038.9| Homo sapiens chromosome 11, clone RP11-746C23, complete sequence Length = 187648 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 tattcacagcaaaataaaca 238 |||||||||||||||||||| Sbjct: 148690 tattcacagcaaaataaaca 148671
>gb|AC107881.16| Homo sapiens chromosome 11, clone CTD-2007B22, complete sequence Length = 147727 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 tattcacagcaaaataaaca 238 |||||||||||||||||||| Sbjct: 56984 tattcacagcaaaataaaca 56965
>dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07, map 22, complete sequences Length = 181678 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 ttcacagcaaaataaacaat 240 |||||||||||||||||||| Sbjct: 30612 ttcacagcaaaataaacaat 30593
>gb|AC102844.11| Mus musculus chromosome 3, clone RP24-389H4, complete sequence Length = 199088 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 tggaaagagagtctcctcta 166 |||||||||||||||||||| Sbjct: 176481 tggaaagagagtctcctcta 176462
>gb|AC145294.4| Mus musculus BAC clone RP23-88B16 from 7, complete sequence Length = 217265 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 tggtattcacagcaaaataa 235 |||||||||||||||||||| Sbjct: 193832 tggtattcacagcaaaataa 193851
>gb|AC149596.2| Mus musculus BAC clone RP24-424J20 from 7, complete sequence Length = 187362 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 tggtattcacagcaaaataa 235 |||||||||||||||||||| Sbjct: 25909 tggtattcacagcaaaataa 25890
>emb|AL731840.17| Mouse DNA sequence from clone RP23-52C15 on chromosome 2, complete sequence Length = 61822 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 195 gactgattctaccgctgtgaatgg 218 |||||| ||||||||||||||||| Sbjct: 49962 gactgagtctaccgctgtgaatgg 49985 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,999,220 Number of Sequences: 3902068 Number of extensions: 2999220 Number of successful extensions: 53156 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53096 Number of HSP's gapped (non-prelim): 60 length of query: 331 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 309 effective length of database: 17,147,199,772 effective search space: 5298484729548 effective search space used: 5298484729548 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)